mRNA_H-elongata_contig74538.15136.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74538.15136.1
Unique NamemRNA_H-elongata_contig74538.15136.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74538.15136.1 vs. uniprot
Match: D8LJP0_ECTSI (Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP0_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.260e-17
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    4 LTARAVRNLPWSPELWCRRLRSLERSAD---GSSDRGDDRAKVEAVRAVWRKALTCGLPSPDDYVKV 195
            LTARAVRNLPWS ELWCRRLRSLERS++   G S  G   A+  A+R VW++AL   LPSPD+YVK+
Sbjct:  318 LTARAVRNLPWSAELWCRRLRSLERSSEEAGGPSGEGTAGAEA-AMRRVWKEALGSSLPSPDEYVKI 383
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BLAST of mRNA_H-elongata_contig74538.15136.1 vs. uniprot
Match: A0A158R732_TAEAS (Uncharacterized protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A158R732_TAEAS)

HSP 1 Score: 52.8 bits (125), Expect = 2.280e-6
Identity = 30/81 (37.04%), Postives = 39/81 (48.15%), Query Frame = 1 
Query:    1 TLTARAVRNLPWSPELWCR-----RLRSLERSADGSSDRGDDRAKVEA-----------VRAVWRKALTCGLPSPDDYVKV 195
            T  ARAVRN+ WS ELWCR       R+ + +   +S  G D A VE            V+ ++  AL CG PS  D + V
Sbjct:  344 TTLARAVRNISWSSELWCRYALACEARAWDLATAANSSCGTDEASVEQLASHLSEEFDPVKDIYENALKCGFPSASDLIAV 424
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74538.15136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJP0_ECTSI1.260e-1764.18Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A158R732_TAEAS2.280e-637.04Uncharacterized protein n=1 Tax=Taenia asiatica Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74538contigH-elongata_contig74538:794..991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue3e-14
Seed eggNOG ortholog2880.D8LJP0
EggNOG free text desc.positive regulation of histone deubiquitination
EggNOG OGsKOG0128@1,KOG0128@2759
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-17_002770.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.4877987-CDS-H-elongata_contig74538:793..9911622931149.4877987-CDS-H-elongata_contig74538:793..991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74538 794..991 +
1691679718.727978-CDS-H-elongata_contig74538:793..9911691679718.727978-CDS-H-elongata_contig74538:793..991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74538 794..991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74538.15136.1prot_H-elongata_contig74538.15136.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74538 794..991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74538.15136.1

>prot_H-elongata_contig74538.15136.1 ID=prot_H-elongata_contig74538.15136.1|Name=mRNA_H-elongata_contig74538.15136.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
TLTARAVRNLPWSPELWCRRLRSLERSADGSSDRGDDRAKVEAVRAVWRK
ALTCGLPSPDDYVKV*
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mRNA from alignment at H-elongata_contig74538:794..991+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74538.15136.1 ID=mRNA_H-elongata_contig74538.15136.1|Name=mRNA_H-elongata_contig74538.15136.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig74538:794..991+ (Himanthalia elongata Himel1 dioecious)
ACGCTGACCGCCAGGGCCGTGCGGAACCTTCCATGGTCCCCCGAGCTGTG
GTGTCGGCGTCTACGTTCTTTGGAACGATCCGCGGACGGGTCCTCAGACC
GCGGAGATGATCGTGCGAAGGTGGAGGCGGTGCGGGCCGTCTGGCGGAAA
GCCCTCACCTGCGGCTTGCCTTCTCCAGATGACTACGTTAAGGTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig74538:794..991+

>mRNA_H-elongata_contig74538.15136.1 ID=mRNA_H-elongata_contig74538.15136.1|Name=mRNA_H-elongata_contig74538.15136.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig74538:794..991+ (Himanthalia elongata Himel1 dioecious)
ACGCTGACCGCCAGGGCCGTGCGGAACCTTCCATGGTCCCCCGAGCTGTG
GTGTCGGCGTCTACGTTCTTTGGAACGATCCGCGGACGGGTCCTCAGACC
GCGGAGATGATCGTGCGAAGGTGGAGGCGGTGCGGGCCGTCTGGCGGAAA
GCCCTCACCTGCGGCTTGCCTTCTCCAGATGACTACGTTAAGGTATAGAC
GCTGACCGCCAGGGCCGTGCGGAACCTTCCATGGTCCCCCGAGCTGTGGT
GTCGGCGTCTACGTTCTTTGGAACGATCCGCGGACGGGTCCTCAGACCGC
GGAGATGATCGTGCGAAGGTGGAGGCGGTGCGGGCCGTCTGGCGGAAAGC
CCTCACCTGCGGCTTGCCTTCTCCAGATGACTACGTTAAGGTATAG
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