mRNA_H-elongata_contig7428.15115.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7428.15115.1
Unique NamemRNA_H-elongata_contig7428.15115.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7428.15115.1 vs. uniprot
Match: D7FZB6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB6_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.070e-34
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    4 CFGCWCSPCAQYMVRKRALEGNLANYICCQGYFPSKFVCCMQPGNCGEKDCPCFCLCLEAFCCNSCAVSSSR 219
            CFGC C+ CAQ++VRKRAL+GNL NY+CCQGY+P   +CCM  G+CGE+ CPCFCLCLE+FCCNSCAVSSSR
Sbjct:   44 CFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYP---MCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSR 112          
BLAST of mRNA_H-elongata_contig7428.15115.1 vs. uniprot
Match: D7FZB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB5_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.470e-34
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 CCFGCWCSPCAQYMVRKRALEGNLANYICCQGYFPSKFVCCMQPGNCGEKDCPCFCLCLEAFCCNSCAVSSSR 219
            C FGC C  CAQ++VRKRAL+GNLANY+CCQGYFP   +CC +PG+CGE+DCPCFCLC+E+F C SCAVSSSR
Sbjct:   43 CTFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFP---MCCFEPGDCGERDCPCFCLCMESFACTSCAVSSSR 112          
BLAST of mRNA_H-elongata_contig7428.15115.1 vs. uniprot
Match: A0A835YWZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.260e-31
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 CCFGCWCSPCAQYMVRKRALEGNLANYICCQGYFPSKFVCCMQPGNCGEKDCPCFCLCLEAFCCNSCAVSSSR 219
            CC+G  CS CAQY VRKRAL+GNL NYICCQGYFP    CCM+PG+CGEK  P  CLCLE+FCC SCAVSSSR
Sbjct:   43 CCYGSLCSCCAQYTVRKRALDGNLDNYICCQGYFPG--CCCMKPGHCGEKSSPACCLCLESFCCLSCAVSSSR 113          
BLAST of mRNA_H-elongata_contig7428.15115.1 vs. uniprot
Match: D7FZB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB7_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 7.180e-26
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 CCFGCWCSPCAQYMVRKRALEGNLANYICCQGYFPSKFVCCMQPGNCGEKDCPCFCLCLEAFCCNSCAVSSSR 219
            C +G  C  CAQ+ VRKRAL G L +Y+CCQGYFP+    C +PG+CGE+ CPCFCLC+E+F C SCAVSSSR
Sbjct:   43 CAYGSLCLGCAQFAVRKRALGGRLDDYVCCQGYFPTH---CCEPGDCGERRCPCFCLCMESFLCPSCAVSSSR 112          
BLAST of mRNA_H-elongata_contig7428.15115.1 vs. uniprot
Match: A0A7S2UXX8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXX8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.000e-23
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 CCFGCW-CSPCAQYMVRKRALEGNLANYICCQGYFPSKFVCCMQPGNCGEKDCPCFCLCLEAFCCNSCAVSSSR 219
            CC G + C PCAQYMVRK+AL+G++ NY CCQGY+      C + G+CGE+ CP  CLCLEA  CNSCAVSS+R
Sbjct:   38 CCLGAFFCCPCAQYMVRKKALDGDMTNYKCCQGYYDCL---CFKAGHCGEESCPDVCLCLEAVFCNSCAVSSTR 108          
BLAST of mRNA_H-elongata_contig7428.15115.1 vs. uniprot
Match: A0A7S2V0P2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0P2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.080e-22
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 CCFG-CWCSPCAQYMVRKRALEGNLANYICCQGYFPSKFVCCMQPGNCGEKDCPCFCLCLEAFCCNSCAVSSSRR 222
            CC   C+C PCAQY++R++ALEG+++NY CCQGY+      C + G+CGE  CP  CLC EA  CNSCAVSS+RR
Sbjct:   39 CCLASCFCPPCAQYIIRQKALEGDMSNYRCCQGYYDEA---CFKSGSCGESSCPEVCLCFEATFCNSCAVSSTRR 110          
BLAST of mRNA_H-elongata_contig7428.15115.1 vs. uniprot
Match: W2J2R3_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2J2R3_PHYPR)

HSP 1 Score: 89.0 bits (219), Expect = 7.190e-21
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 CCFG-CWCSPCAQYMVRKRALEGNLANYICCQGYFPSKFVCCMQPGNCGEKDCPCFCLCLEAFCCNSCAVSSSR 219
            CC G C C  CAQ ++R++AL  +++NY CCQGY     V C + G CGE  CP  CLCLEAFCCN CAVS++R
Sbjct:   36 CCLGSCLCPCCAQIIIRRKALNYDMSNYTCCQGYMDG-IVPCARSGRCGESSCPNCCLCLEAFCCNGCAVSATR 108          
BLAST of mRNA_H-elongata_contig7428.15115.1 vs. uniprot
Match: A0A484EEY5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEY5_BRELC)

HSP 1 Score: 88.6 bits (218), Expect = 4.010e-20
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 CCFG-CWCSPCAQYMVRKRALEGNLANYICCQGYFPSKFVCCMQPGNCGEKDCPCFCLCLEAFCCNSCAVSSSR 219
            CC   C C  CAQ ++R++AL  +++NY CCQGY     V C + G CGE  CP FCLCLE+FCCN CAVS++R
Sbjct:   36 CCMSACLCPCCAQIVIRRKALNYDMSNYTCCQGYMDG-LVPCARSGQCGESSCPNFCLCLESFCCNGCAVSATR 108          
BLAST of mRNA_H-elongata_contig7428.15115.1 vs. uniprot
Match: A0A7S2UXW4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXW4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.610e-20
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 CCFGCW-CSPCAQYMVRKRALEGNLANYICCQGYFPSKFVCCMQPGNCGEKDCPCFCLCLEAFCCNSCAVSSSR 219
            CC G + C  CAQY +RK+AL  +++NY CCQGY+      C + GN GE  CP  CLCLEA+CC SCAVSS+R
Sbjct:   39 CCIGTFFCPCCAQYYIRKKALNDDMSNYTCCQGYYDCA---CFKAGNLGESSCPELCLCLEAYCCESCAVSSTR 109          
BLAST of mRNA_H-elongata_contig7428.15115.1 vs. uniprot
Match: A0A8K1FD78_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD78_PYTOL)

HSP 1 Score: 88.2 bits (217), Expect = 5.650e-20
Identity = 42/74 (56.76%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    1 CCFG-CWCSPCAQYMVRKRALEGNLANYICCQGYFPSKFVCCMQPGNCGEKDCPCFCLCLEAFCCNSCAVSSSR 219
            CC G C C  CAQ  +R++AL  ++ NY CCQGY    FV C++ G CGE  CP  CLCLEAF CN CAVSS+R
Sbjct:   36 CCLGSCVCPCCAQIYIRRKALHYDMTNYRCCQGYMDG-FVPCLKSGECGESSCPNMCLCLEAFLCNGCAVSSTR 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7428.15115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB6_ECTSI1.070e-3473.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FZB5_ECTSI1.470e-3472.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YWZ0_9STRA2.260e-3173.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FZB7_ECTSI7.180e-2663.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UXX8_9STRA5.000e-2360.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2V0P2_9STRA1.080e-2257.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W2J2R3_PHYPR7.190e-2155.41Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A484EEY5_BRELC4.010e-2054.05Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S2UXW4_9STRA5.610e-2055.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8K1FD78_PYTOL5.650e-2056.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7428contigH-elongata_contig7428:8186..9182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue8.6e-16
Seed eggNOG ortholog4792.ETI46731
EggNOG OGs2BWTM@1,2S2DX@2759,3QDY9@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.2974253-CDS-H-elongata_contig7428:8185..83001622931147.2974253-CDS-H-elongata_contig7428:8185..8300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7428 8186..8300 +
1691679717.7845292-CDS-H-elongata_contig7428:8185..83001691679717.7845292-CDS-H-elongata_contig7428:8185..8300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7428 8186..8300 +
1622931147.3107128-CDS-H-elongata_contig7428:9054..91821622931147.3107128-CDS-H-elongata_contig7428:9054..9182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7428 9055..9182 +
1691679717.7994025-CDS-H-elongata_contig7428:9054..91821691679717.7994025-CDS-H-elongata_contig7428:9054..9182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7428 9055..9182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7428.15115.1prot_H-elongata_contig7428.15115.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7428 8186..9182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7428.15115.1

>prot_H-elongata_contig7428.15115.1 ID=prot_H-elongata_contig7428.15115.1|Name=mRNA_H-elongata_contig7428.15115.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
CCFGCWCSPCAQYMVRKRALEGNLANYICCQGYFPSKFVCCMQPGNCGEK
DCPCFCLCLEAFCCNSCAVSSSRRGKRERER
back to top

mRNA from alignment at H-elongata_contig7428:8186..9182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7428.15115.1 ID=mRNA_H-elongata_contig7428.15115.1|Name=mRNA_H-elongata_contig7428.15115.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=997bp|location=Sequence derived from alignment at H-elongata_contig7428:8186..9182+ (Himanthalia elongata Himel1 dioecious)
TGCTGCTTCGGTTGTTGGTGCAGCCCCTGCGCCCAGTACATGGTCAGGAA GCGCGCCCTCGAGGGAAATCTGGCGAACTACATCTGCTGTCAGGGGTATT TCCCGAGTAAGTTTGGTCAGAGCATGCCAACGGATGGGGGGGGGGGGTCA TTCTTGAAGCCGTCGTCTTTCGAACGGCGTCCTATTCTCTTAATTGTCGT CTCTTTTTTTCCTCTTAAATATATATATATATATATATATATATATATAT ATATTACTTGTCTCTTTCATTTGCTGATTCTTTTTTCTTTTTTCTTTTTA TCATGCCTTGTGGCGTTCTTGGCTACAGTATTGCTTGTTTTTCGTTTTTG GGTCTTTATTCTCTATTTGCAACAGAACCTGATCATGGTTGGTCCCCTGG ACTGCATCTCTCATGGTGCTAAGAAGGGGTGGATGTTCGGAGGGTTGGAA TGAGTTCAAGGTTTAAAAAAATAAAAATACGTAAAATATCAAAATTCGCT TCGGACCCTCTGTTTCTCGATAAGTGGCAAGCTCGTGTTCTTTTTGCGTC TTGTGTTTTTTCGCCCTCGCTTTTCCACCCCCAACGCAGTGTTGATTCCT TTCCCCCAGCTCTGTCTTCCTGAAAACCCCAGCTAAGGCGTGCAGAACTT GAGAACCCCCCCCCCCCCCCCTCCCCCGCCCTCACTTTTTGTGTTGTTTC GTTTTTTCGTTTTGAACCACGCTGCTCGCCCACTTTCCTTCCCTTCCCTC CCCTCCCCCATCAAATTCCATGTTTCATACTGTCCTATGTACACACCGCA TACTCTCTGTTCTATGTACTCACTTCACTTTACTTAATCATGTTTATTGA CTTTATCTTTGTTTCCAAGTGTGCTGCATGCAGCCCGGAAACTGCGGCGA GAAGGATTGTCCCTGTTTCTGCCTTTGCCTCGAGGCCTTCTGCTGCAACA GCTGTGCCGTCAGCTCCAGTAGGCGAGGAAAGAGAGAGAGAGAGAGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7428:8186..9182+

>mRNA_H-elongata_contig7428.15115.1 ID=mRNA_H-elongata_contig7428.15115.1|Name=mRNA_H-elongata_contig7428.15115.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig7428:8186..9182+ (Himanthalia elongata Himel1 dioecious)
TGCTGCTTCGGTTGTTGGTGCAGCCCCTGCGCCCAGTACATGGTCAGGAA
GCGCGCCCTCGAGGGAAATCTGGCGAACTACATCTGCTGTCAGGGGTATT
TCCCGAGTAAGTTTGTGCTGCTTCGGTTGTTGGTGCAGCCCCTGCGCCCA
GTACATGGTCAGGAAGCGCGCCCTCGAGGGAAATCTGGCGAACTACATCT
GCTGTCAGGGGTATTTCCCGAGTAAGTTTGTGTGCTGCATGCAGCCCGGA
AACTGCGGCGAGAAGGATTGTCCCTGTTTCTGCCTTTGCCTCGAGGCCTT
CTGCTGCAACAGCTGTGCCGTCAGCTCCAGTAGGCGAGGAAAGAGAGAGA
GAGAGAGATGTGCTGCATGCAGCCCGGAAACTGCGGCGAGAAGGATTGTC
CCTGTTTCTGCCTTTGCCTCGAGGCCTTCTGCTGCAACAGCTGTGCCGTC
AGCTCCAGTAGGCGAGGAAAGAGAGAGAGAGAGAGA
back to top