mRNA_H-elongata_contig73331.15021.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig73331.15021.1 vs. uniprot
Match: D7G5I4_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5I4_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 5.140e-20 Identity = 65/111 (58.56%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 1 IRYADKVREKARQKQLVRQEEENKQLEIKNKEEQEAAGGSGRSAPSTMKEESGRRKRKG----RHQQILEEWEDLANEERLYKKLRNKKLTQEEYDQELRKRSGRNAFGEE 321
I+YADK REKARQKQLVRQ+EENKQ I RHQQ+LEEW+DLANEERLYKKLRNKKLT+EEYD ELRK SG+NAFGEE
Sbjct: 446 IKYADKAREKARQKQLVRQDEENKQRAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHQQLLEEWDDLANEERLYKKLRNKKLTREEYDHELRKHSGKNAFGEE 556
BLAST of mRNA_H-elongata_contig73331.15021.1 vs. uniprot
Match: W7TH80_9STRA (Atp-dependent rna helicase ddx55 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TH80_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.430e-9 Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 1
Query: 1 IRYADKVREKARQKQLVRQEEENKQLEIKNKEEQEAAGGSGRSAPSTMKEESG-----RRKRKGRHQQILEEWEDLANEERLYKKLRNKKLTQEEYDQELRKRSGRNAFGEEEETQDDA 342
I Y DK RE AR+ +L E +++ + + G +G+ E G R+KRKG+HQQI+EEWE+L EERL+K+LR +K+++EEY++ELR+R G + GE E + +DA
Sbjct: 525 IEYQDKKREAARKMRLAEAARERDRVKEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKELRRR-GSDEEGEGEASNEDA 642
BLAST of mRNA_H-elongata_contig73331.15021.1 vs. uniprot
Match: W2KZ02_PHYPR (Helicase C-terminal domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KZ02_PHYPR) HSP 1 Score: 65.9 bits (159), Expect = 1.490e-9 Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 1
Query: 1 IRYADKVREKARQKQLVRQEEENKQLEIKNKEEQEAAGGSGRSAP---STMKEESGRRKRKGRHQQILEEWEDLANEERLYKKLRNKKLTQEEYDQEL 285
I+Y DK REK RQK+L +EN+ + KN E +E R P K R K+KG HQQI+EEW++LA EE+LYKK++ K+T+EEY++ L
Sbjct: 182 IKYKDKAREKERQKKLAVIAKENEARDKKNVEMREKK----RKRPLDEENQKHPRRREKKKGLHQQIVEEWDELAEEEKLYKKMKKGKITEEEYEKAL 275
BLAST of mRNA_H-elongata_contig73331.15021.1 vs. uniprot
Match: A0A0P1AZG5_PLAHL (Dead deah box rna n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZG5_PLAHL) HSP 1 Score: 62.4 bits (150), Expect = 3.020e-8 Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1
Query: 1 IRYADKVREKARQKQLVRQEEENKQLEIKNKEEQEAAGGSGRSAPST---MKEESGRRKRKGRHQQILEEWEDLANEERLYKKLRNKKLTQEEYDQEL 285
I+Y +K REK RQK+L+ +EN+ + KN E +E R P K R K+KG HQQI+EEW +LA EE+LYKK++ K+T+EEY++ L
Sbjct: 480 IKYKNKAREKERQKKLLVIAKENEARDKKNAEMREKK----RKRPLEWVDQKHPRRREKKKGLHQQIVEEWNELAEEEKLYKKMKQGKVTEEEYEKAL 573
BLAST of mRNA_H-elongata_contig73331.15021.1 vs. uniprot
Match: A0A7S2JUI1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUI1_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 4.420e-8 Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 1
Query: 1 IRYADKVREKARQKQLVRQEEENKQLEIKNKEEQEAAGGSGRSAPSTMK-EESGRRKRKGRHQQILEEWEDLANEERLYKKLRNKKLTQEEYDQEL 285
I Y DKVRE+ARQK R ++E KQ +++ + + ++KR GRHQ+ILEEW+DLA EERL+KKL+ K+TQEEYD+++
Sbjct: 97 IPYEDKVREQARQK---RMKDEGKQEKLQKQXXXXXXXXXXXXXXXXXRFNPKQKKKRVGRHQRILEEWDDLAKEERLHKKLKRGKITQEEYDRQM 189
BLAST of mRNA_H-elongata_contig73331.15021.1 vs. uniprot
Match: A0A024GQY6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GQY6_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.910e-7 Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 1
Query: 1 IRYADKVREKARQKQLVRQEEENKQLEIKNKEEQEAAGGSGRSAPSTMKEESGRRKRKGRHQQILEEWEDLANEERLYKKLRNKKLTQEEYDQELRKRSGRN 306
I++ DK REK RQK+LV E +L + K +E T K R K+KG HQQI++EW++LA EER+YKKL+ K+T+++Y+Q L + RN
Sbjct: 517 IKFKDKAREKERQKKLV----EYAKLRAERKPHEELPVFQKEKGKMT-KNPRRREKKKGLHQQIVDEWDELAEEERMYKKLKRGKITEDDYEQVLLCKKARN 613
BLAST of mRNA_H-elongata_contig73331.15021.1 vs. uniprot
Match: A0A485L0V9_9STRA (Aste57867_14394 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0V9_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 3.490e-7 Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 1 IRYADKVREKARQKQLVRQEEENKQLEIKNKEEQEAAGGSGRSAPSTMKEESGRRKRKGRHQQILEEWEDLANEERLYKKLRNKKLTQEEYD 276
I Y DK REK RQK+LV E +K +++ E+++A R A R K+KG HQQI+EEW++L EE L+KK + K+T+EEY+
Sbjct: 497 IPYKDKAREKQRQKKLVEINETHKAEKVERFEKKQAE--KKRKAEELKDGPRRREKKKGMHQQIVEEWDELEKEEHLFKKFKRGKMTKEEYE 586
BLAST of mRNA_H-elongata_contig73331.15021.1 vs. uniprot
Match: W4GW55_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GW55_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 6.420e-7 Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 1 IRYADKVREKARQKQLVRQEEENKQLEIKNKEEQEAAGGSGRSAPSTMKEESGRR--KRKGRHQQILEEWEDLANEERLYKKLRNKKLTQEEYD 276
I Y DK REK RQK+LV E+K ++ E+++ + + + E+ RR K+KG HQQI+EEWE+L EE L+KK + K+T+EEYD
Sbjct: 490 IPYKDKAREKQRQKKLVEIAAEHKAEKLDRFEKKQLD----KKRKAAVDEDGPRRREKKKGMHQQIVEEWEELEKEEHLFKKFKRGKITKEEYD 579
BLAST of mRNA_H-elongata_contig73331.15021.1 vs. uniprot
Match: A0A1V9YIN7_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIN7_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 2.180e-6 Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 1
Query: 1 IRYADKVREKARQKQLVRQEEENKQLEIKNKEEQEAAGGSGRSAPSTMKEESGRR-KRKGRHQQILEEWEDLANEERLYKKLRNKKLTQEEYDQEL 285
I Y DKVREK RQ +L ++K +++N E++ A + + KE RR K+KG+HQQI+EEW++L EERLYKK + K+++ EY++ L
Sbjct: 490 IPYKDKVREKQRQAKLAAIAAQHKAEKLENYEKKLAK----KELEAKAKEAPRRREKKKGQHQQIVEEWDELDREERLYKKFKRGKISKAEYEEAL 581
BLAST of mRNA_H-elongata_contig73331.15021.1 vs. uniprot
Match: A0A7S2PZ36_9STRA (Hypothetical protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PZ36_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 2.260e-6 Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 1 IRYADKVREKARQKQLVRQ----EEENKQLEIKNKEEQEAAGGSGRSAPSTMKEESGRRKRKGRHQQILEEWEDLANEERLYKKLRNKKLTQEEYDQEL 285
I + DK RE ARQK+L + + KQ++ + + + R A K + +KR G+ Q+I +EW++LA EERLYKKLR+ K+T+EEYD+++
Sbjct: 80 ISFKDKTREAARQKRLAAELAAGGKNAKQIKAEQRAAERIQKQKDRRAAEIAKGRNPNKKR-GKQQRIFDEWDELAKEERLYKKLRSNKITKEEYDRQM 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73331.15021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73331.15021.1 >prot_H-elongata_contig73331.15021.1 ID=prot_H-elongata_contig73331.15021.1|Name=mRNA_H-elongata_contig73331.15021.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp IRYADKVREKARQKQLVRQEEENKQLEIKNKEEQEAAGGSGRSAPSTMKEback to top mRNA from alignment at H-elongata_contig73331:603..2558- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73331.15021.1 ID=mRNA_H-elongata_contig73331.15021.1|Name=mRNA_H-elongata_contig73331.15021.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1956bp|location=Sequence derived from alignment at H-elongata_contig73331:603..2558- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73331:603..2558- >mRNA_H-elongata_contig73331.15021.1 ID=mRNA_H-elongata_contig73331.15021.1|Name=mRNA_H-elongata_contig73331.15021.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig73331:603..2558- (Himanthalia elongata Himel1 dioecious)back to top |