mRNA_H-elongata_contig7331.15015.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7331.15015.1
Unique NamemRNA_H-elongata_contig7331.15015.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7331.15015.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 336 bits (861), Expect = 3.920e-109
Identity = 175/349 (50.14%), Postives = 204/349 (58.45%), Query Frame = 1 
Query:   19 VAAVYGNGAWPLLAVYERGEMATNGNYLEPDSISVRHGICGDPEQTSDESSNRYGNANSYYPVLEIYTEGSVMEIKIVVSTTH-----------------------------------------------------------------------HGHLEFFLCDAADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPSCKSAETGQTILPGAESGNVVTARYHLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWILTGLSMCGDGDSYPEEYWNCADIEIMSD---GTPSDSAPAPAPESESSAPIAGEAFKPETFAPLVEM 843
            V A+YG G WP L  YER E+  NGNY EP+ ISVRHGICGDPEQT  E +N YG  NS YPV   Y+EG ++EIKIVVST H                                                                        GHLEFF+C+A D+ DPDGVVTQGCFNMHPLDRA+DDGDASPIDP++ GRY+LDP C++ ET Q  LPGA  G+V TARY LPSG+TCSRCI+QM YYTGN+C HPGYD+F+P S P  CAP K DW+ T L MCG+   YPEE+WNCADIEI SD   G P+ + P+P  E E S         PE   P VE+
Sbjct:   59 VLAMYGRGEWPHLFSYERNEVHGNGNYYEPEEISVRHGICGDPEQTKAEGTNLYGQENSKYPVHGKYSEGGIIEIKIVVSTYHWVRELPELSAQGFICGIAYLAFLVLVAAFAVVVFVFVVEEGEWKSAPTLYAHRAYEAVPGKYRALDYVHGGSGHLEFFICNAEDMSDPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADIEITSDEDGGGPAPTTPSPTDEEELSP-------TPEPSVPTVEL 400
[Close]
BLAST of mRNA_H-elongata_contig7331.15015.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 5.880e-108
Identity = 150/238 (63.03%), Postives = 179/238 (75.21%), Query Frame = 1 
Query:   34 GNGAWPLLAVYERGEMATNGNYLEPDSISVRHGICGDPEQTSDESSNRYGNANSYYPVLEIYTEGSVMEIKIVVSTTHHGHLEFFLCDAADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPSCKSAETGQTILPGAESGNVVTARYHLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWILTGLSMCGDGDSYPEEYWNCADIEIMSDGTP 744
            G+  WP    +  GE A NGNY+E D ++ RHG+CGDPEQT+ E SN+YG  NS YPVLE Y EG ++E+KIVVST H GH+E FLCDA DL D PD VVTQ CFN +PLDRAEDD    PIDP   GR+ LDP C+++ET Q +LPGA +G+V TAR+ LP G+TC RC+VQMAYYTGNSC H GY +FNP SWPS CAP+KADWI   +  CGDGD+YPEE+WNCAD+ I SDG P
Sbjct:   71 GDQPWP----HFNGERAKNGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADVSITSDGGP 304
[Close]
BLAST of mRNA_H-elongata_contig7331.15015.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 8.990e-104
Identity = 155/284 (54.58%), Postives = 191/284 (67.25%), Query Frame = 1 
Query:   34 GNGAWPLLAVYERGEMATNGNYLEPDSISVRHGICGDPEQTSDESSNRYGNANSYYPVLEIYTEGSVMEIKIVVSTTHHGHLEFFLCDAADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPSCKSAETGQTILPGAESGNVVTARYHLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWILTGLSMCGDGDSYPEEYWNCADIEIMSDGTPSDSAPAP-----------APESESSAPIAGEAFKPETFAPLVEMSA 849
            G+  WP    +  GE A NGNY+E + ++ RHGICGDPEQT+ ESSN+YG  NS YPV E Y EG ++E+KIVVST H GH+E FLC+AA+L   PD  VTQ CFN HPLDRA+DD    P DP+  GR+ LDP C+++ET Q +L GA   +V TAR+ LP G++C RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI   +  CGDGD+YPEE+WNCADI I SDG      PAP           APE E+  P+A       T+AP+ +  A
Sbjct:   74 GDKPWP----HFNGERAENGNYIESEEVARRHGICGDPEQTAAESSNKYGQENSNYPVRETYAEGGILEVKIVVSTYHWGHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDG-----GPAPXXXXXXXXXXTAPE-ETEPPVADVPTAAPTYAPIPDSEA 347
[Close]
BLAST of mRNA_H-elongata_contig7331.15015.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 1.040e-103
Identity = 142/251 (56.57%), Postives = 175/251 (69.72%), Query Frame = 1 
Query:   19 VAAVYGNGAWPLLAVYERGEMATNGNYLEPDSISVRHGICGDPEQTSDESSNRYGNANSYYPVLEIYTEGSVMEIKIVVSTTHHGHLEFFLCDAADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPSCKSAETGQTILPGAESGNVVTARYHLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWILTGLSMCGDGDSYPEEYWNCADIEIMSDGTPSDSAPAPAP 771
            V A YG+G WPL   YE+GEMA NGNYLE D I+ RHGICGDPEQ  +E +N Y   N  +P+L  Y EG V+EIK+ ++  H GH+EFF+C+A +++DPDG+  Q CFN +PL RAE D + SPIDPNYPGRY++DP C+  ET QT   GA+ G V+ A Y LP G+TC RCI+QM YYTGNSC H GY++F P SWPS CAP K DWI     +CG+  SYPEE+W CAD  I  DG  +   P PAP
Sbjct:   41 VLAEYGDGEWPLRWAYEKGEMAENGNYLEKDEIAKRHGICGDPEQNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADFAITPDGMAN---PTPAP 288
[Close]
BLAST of mRNA_H-elongata_contig7331.15015.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 1.130e-103
Identity = 146/238 (61.34%), Postives = 175/238 (73.53%), Query Frame = 1 
Query:   34 GNGAWPLLAVYERGEMATNGNYLEPDSISVRHGICGDPEQTSDESSNRYGNANSYYPVLEIYTEGSVMEIKIVVSTTHHGHLEFFLCDAADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPSCKSAETGQTILPGAESGNVVTARYHLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWILTGLSMCGDGDSYPEEYWNCADIEIMSDGTP 744
            G+  WP    +  GE A NGNY+E D ++ RHG+CGDPEQT+ E SN+YG  NS YPVLE Y EG ++E+KIVVST H GH+E FLCDA DL D PD VVTQ CFN HPLDRAEDD    PIDP   GR+ LDP C+++ET Q ++PGA  G+V TAR+ LP G+TC RC+VQMAY+  NSC H GY +FNP SWP  CAP+KADWI   +  CGDGD+YPEE+WNCAD+ I SDG P
Sbjct:   42 GDQPWP----HFNGERAENGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSKYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYW--NSCKHQGYAEFNPPSWPGSCAPSKADWIKEAVGQCGDGDAYPEEFWNCADVSITSDGGP 273
[Close]
BLAST of mRNA_H-elongata_contig7331.15015.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 1.350e-100
Identity = 149/245 (60.82%), Postives = 177/245 (72.24%), Query Frame = 1 
Query:   34 GNGAWPLLAVYERGEMATNGNYLEPDSISVRHGICGDPEQTSDESSNRYGNANSYYPVLEIYTEGSVMEIKIVVSTTHHGHLEFFLCDAADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPSCKSAETGQTILPGAESGNVVTARYHLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWILTGLSMCGDGDSYPEEYWNCADIEIMSDGTPSDSAPAP 765
            G+  WP    +  GE A NGNY+E + ++ RHGICGDPEQT+ E SN+YG  NS YPVLE Y EG ++E K+VVST H GH+E FLCDA DL   PD  VTQ CFN HPLDR +DD   SPIDP+  GR+ LDP C+++ET Q +L GA  G+V TAR+ LP G+TC RC+VQM YYTGNSC H GY +FNP SWPS CAP KADWI   +  CGDGD+YPEE+WNCADI I SDG P   AP+P
Sbjct:   73 GDKPWP----HFNGERAENGNYIESEEVAQRHGICGDPEQTAAEDSNKYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWINEVVGHCGDGDAYPEEFWNCADISITSDGDP---APSP 310
[Close]
BLAST of mRNA_H-elongata_contig7331.15015.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 1.630e-100
Identity = 143/238 (60.08%), Postives = 171/238 (71.85%), Query Frame = 1 
Query:   34 GNGAWPLLAVYERGEMATNGNYLEPDSISVRHGICGDPEQTSDESSNRYGNANSYYPVLEIYTEGSVMEIKIVVSTTHHGHLEFFLCDAADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPSCKSAETGQTILPGAESGNVVTARYHLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWILTGLSMCGDGDSYPEEYWNCADIEIMSDGTP 744
            G+  WP    + +G  A NGNYLE D ++ RHGICGDPEQT+ E  N+YG  N  YPVL  Y EG V+E+KI+VST H GH+E FLCD ADL +  D +VTQ CFN +PLDRA DD    PIDP Y GR+ LDP C+++ET Q ++ GA  G+V TARY LP G+ C RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI   +  CGDGD+YPEE+WNCADI I SDG P
Sbjct:   78 GDKPWP----HYQGARAANGNYLESDEVAQRHGICGDPEQTAAEGDNKYGRENYNYPVLGTYAEGGVLEVKILVSTYHWGHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDGGP 311
[Close]
BLAST of mRNA_H-elongata_contig7331.15015.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 1.880e-97
Identity = 147/246 (59.76%), Postives = 176/246 (71.54%), Query Frame = 1 
Query:   10 ASVVAAVYGNGAWPLLAVYERGEMATNGNYLEPDSISVRHGICGDPEQTSDESSNRYGNANSYYPVLEIYTEGSVMEIKIVVSTTHHGHLEFFLCDAADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPSCKSAETGQTILPGAESGNVVTARYHLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWILTGLSMCGDGDSYPEEYWNCADIEIMSDGTP 744
            A+ V A  G+  WP    +  G+ A NGNY+E + ++ RHGICGDPEQT+ E SN YG  NS YPVLE Y EG ++E K+VVST H GH+E FLCDA DL   PD  VTQ CFN HPLDR +DD   SPIDP+  GR+ LDP C+++ET Q +L GA  G+V TAR+ LP G++C RC+VQM YYTGNSC H GY +FNP SWPS CAP KADWI   +  CGDGD+YPEE+WNCADI I SDG P
Sbjct:   65 AAAVRARGGDQPWP----HFNGDRAANGNYIESEEVAQRHGICGDPEQTAAEGSNLYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDYFNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQMVYYTGNSCKHQGYAEFNPDSWPSSCAPTKADWINELVGFCGDGDAYPEEFWNCADISITSDGDP 306
[Close]
BLAST of mRNA_H-elongata_contig7331.15015.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 4.210e-91
Identity = 135/225 (60.00%), Postives = 161/225 (71.56%), Query Frame = 1 
Query:   76 EMATNGNYLEPDSISVRHGICGDPEQTSDESSNRYGNANSYYPVLEIYTEGSVMEIKIVVSTTHHGHLEFFLCDAADLDD-PDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPSCKSAETGQTILPGAESGNVVTARYHLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWILTGLSM-CGDGDSYPEEYWNCADIEIMSDGTP 744
            E   NGNY++ D             +T+ E SNRYG  NS YPVLE Y EG ++E+KIVV+T H GH+E FLCDA DL D PD VVTQ CFN +PLDRAEDD   SPIDP   GR+ LDP C+++ET Q +LPGA +G+V TAR+ LP G+TC RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI   +   CGDGD+YPEE+WNCAD+ I SDG P
Sbjct:   45 EPGGNGNYIQSD-------------ETAAEGSNRYGQENSNYPVLETYAEGGILEVKIVVATYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEIVGQHCGDGDAYPEEFWNCADVSITSDGGP 256
[Close]
BLAST of mRNA_H-elongata_contig7331.15015.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 4.900e-91
Identity = 140/280 (50.00%), Postives = 184/280 (65.71%), Query Frame = 1 
Query:   25 AVYGNGAWPLLAVYERGEMATNGNYLEPDSISVRHGICGDPEQTSDESSNRYGNANSYYPVLEIYTEGSVMEIKIVVSTTHHGHLEFFLCDAADLD-DPDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPSCKSAETGQTILPGAESGNVVTARYHLPSGITCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWILTGLSMCGDGDSYPEEYWNCADIEIMSDGTPSDSAPAPAPESESSAPIAGEAFKPETFAPLVEMSAIETP 861
            A YG+G WPLLA Y +GEM  NGN+ E D IS RHGICGDP+Q S ES+N Y ++ S +  LE   EG V++IK+VV+    GHLEFF+C++ADL   P     Q CFNM+PL RAE D   SPIDP YPGRY+++P C + E  + +  GA+ G V+  +Y LP G+TC  C++QM +YTGN+C H GYDDF P SWPS+CAP KA+WI T   MCG   +YPEE+W+C+DI I +DG          P  +SS+P+     +P+T  PL   + + TP
Sbjct:   76 AEYGDGEWPLLAAYNKGEMCDNGNFYERDEISARHGICGDPKQFSLESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEYLGGHLEFFICNSADLRYGPTSKPNQECFNMNPLTRAEGDDVNSPIDPAYPGRYYVNPPCHATEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDG----------PTEKSSSPV-----EPDTPPPLSTATPVATP 340
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7331.15015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI36_9PHAE3.920e-10950.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LD67_ECTSI5.880e-10863.03EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM93_ECTSI8.990e-10454.58EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G4D7_ECTSI1.040e-10356.57EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KD35_9PHAE1.130e-10361.34CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LM92_ECTSI1.350e-10060.82EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMF4_ECTSI1.630e-10060.08EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5KTY6_9PHAE1.880e-9759.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP25_ECTSI4.210e-9160.00EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFL8_9PHAE4.900e-9150.00CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7331contigH-elongata_contig7331:4917..10164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score363.6
Seed ortholog evalue9.2e-98
Seed eggNOG ortholog2880.D7FSZ8
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size942
Cds size942
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7331.15015.1prot_H-elongata_contig7331.15015.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7331 4917..10164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931135.8684576-CDS-H-elongata_contig7331:4916..51251622931135.8684576-CDS-H-elongata_contig7331:4916..5125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7331 4917..5125 -
1691679713.1956902-CDS-H-elongata_contig7331:4916..51251691679713.1956902-CDS-H-elongata_contig7331:4916..5125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7331 4917..5125 -
1622931135.8856719-CDS-H-elongata_contig7331:5355..53911622931135.8856719-CDS-H-elongata_contig7331:5355..5391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7331 5356..5391 -
1691679713.2052083-CDS-H-elongata_contig7331:5355..53911691679713.2052083-CDS-H-elongata_contig7331:5355..5391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7331 5356..5391 -
1622931135.9020975-CDS-H-elongata_contig7331:5706..58441622931135.9020975-CDS-H-elongata_contig7331:5706..5844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7331 5707..5844 -
1691679713.2160964-CDS-H-elongata_contig7331:5706..58441691679713.2160964-CDS-H-elongata_contig7331:5706..5844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7331 5707..5844 -
1622931135.9166198-CDS-H-elongata_contig7331:6257..65461622931135.9166198-CDS-H-elongata_contig7331:6257..6546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7331 6258..6546 -
1691679713.2310212-CDS-H-elongata_contig7331:6257..65461691679713.2310212-CDS-H-elongata_contig7331:6257..6546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7331 6258..6546 -
1622931135.9305308-CDS-H-elongata_contig7331:9049..91661622931135.9305308-CDS-H-elongata_contig7331:9049..9166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7331 9050..9166 -
1691679713.2420151-CDS-H-elongata_contig7331:9049..91661691679713.2420151-CDS-H-elongata_contig7331:9049..9166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7331 9050..9166 -
1622931135.9484534-CDS-H-elongata_contig7331:10011..101641622931135.9484534-CDS-H-elongata_contig7331:10011..10164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7331 10012..10164 -
1691679713.25197-CDS-H-elongata_contig7331:10011..101641691679713.25197-CDS-H-elongata_contig7331:10011..10164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7331 10012..10164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7331.15015.1

>prot_H-elongata_contig7331.15015.1 ID=prot_H-elongata_contig7331.15015.1|Name=mRNA_H-elongata_contig7331.15015.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=314bp
MPIASVVAAVYGNGAWPLLAVYERGEMATNGNYLEPDSISVRHGICGDPE
QTSDESSNRYGNANSYYPVLEIYTEGSVMEIKIVVSTTHHGHLEFFLCDA
ADLDDPDGVVTQGCFNMHPLDRAEDDGDASPIDPNYPGRYFLDPSCKSAE
TGQTILPGAESGNVVTARYHLPSGITCSRCIVQMAYYTGNSCMHPGYDDF
NPTSWPSECAPNKADWILTGLSMCGDGDSYPEEYWNCADIEIMSDGTPSD
SAPAPAPESESSAPIAGEAFKPETFAPLVEMSAIETPVPVQESAARETPA
PTPEFIVSGTPTPV
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mRNA from alignment at H-elongata_contig7331:4917..10164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7331.15015.1 ID=mRNA_H-elongata_contig7331.15015.1|Name=mRNA_H-elongata_contig7331.15015.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5248bp|location=Sequence derived from alignment at H-elongata_contig7331:4917..10164- (Himanthalia elongata Himel1 dioecious)
ATGCCCATCGCTTCGGTCGTTGCCGCAGTATATGGTAACGGGGCTTGGCC
CCTCTTGGCTGTGTACGAGAGGGGAGAGATGGCGACCAATGGTAACTATC
TCGAGCCGGATTCGATTTCTGTTCGGCATGGGATTTGCGGAGATCCTGAA
CAGGTCAGACCATCTTCGGAACCAAAACAAGCCTTGATAGTTTAATGAGC
TGAAGACCGCTCCCGATTTTTTATTTTCAGCTGTAAACTGTTTGCCCTTC
CATCTGGAAAACCATGCCAGTAGTTGTTAGGATATGCTTGGTAAAATATT
GATTTTTGTTTTCCGCCCTCTGAGGTCAAGCATGGTGCATTTTCATGAAC
ATATTCTATTATAATAATACTGCATACATGTGGTGCCATTAATGCGTGAT
TTTCTATATTATGGTACTACTAATAATGCTGTAATATTAGTGGGAACCCA
ACGGACATAATAACATTGGAACGAAGCTCACAGAATATACTTAAGAAGTT
ACACAGCGATTAGAATTTGGAATCGCTGAGAGATTTGCATTTTCTTGGCC
GGGTCCTCCACCCAACGCGGTGAAGGGCCGGGCGGGCGAGTCCAGTTCTC
CTTCCGGCGGCGTAGATATCCCAATACGGCTCACATTCTTCCGTAGTGAC
AGCTGGCATCCTACGAGCGATCATACCTACGATGCTAATTGTTACCGAAG
AATATGGGTCGTGTTCGTTTCGGGCGCTGCCATACCATACCATACAATAC
CATATAATATCCTACCATAACATCCGCTTAGGCGCGTCTCATACCCCCGC
CTTTTTCTCACCCGCCATGTCTATCTACGTGGCAGACTTGCTTAAAAATA
AACCAATACCATTTCGCGGGCACGTTGAGGTCGAAACGGGGAGCGTTTGG
TGTGTGGATCAAGAAACCTTCCATGATGCTAGTAGTTAAGAACGTCCTGA
TTTTGACCAAATCTTCTGTGTATGCCCGTTACCTGCTGCAACGTACAGAC
GTCGGACGAGAGCTCCAACAGATACGGTAATGCGAACAGCTACTATCCCG
TACTAGAGATCTACACGGAGGGGTCTGTGATGGAGATCAAGATCGTAGTG
TCCACGACACATCATGTAAGTACTTGCAGATATTACCTGCATATAGTCTA
CGTAAATGCACACACGAAATTATGGGCATATGTCAGTTGATTACTTCATA
CTTCGTGTGCCTTTAAGAATAATAATAGTTGTCGATTGCTTCAATCGTCA
TCAGTTCGGAGCGGCTTTGCTCATACGTTCAACATACGTGCAGCCATCAA
CGCGTCCATATGATTCAACTGACATTACGTATGCGGTATGAGTACATACT
CTGGCCTAGATATTACGAGAGAAGGAGTTTGTGGTAGCAAAAAATCGAAC
AGGGGTACAATGTTTTATATTACATGTTTGTCTTCCAAGCCGAAACCCAC
AGGTCGCATCAAGGTTGGAAAAAGGGTACTTGGACACGGGGTAATAAAAG
GCCATTTTTGACACCCAGATATTTTGCCAATGGGGCCATTTAACGTGATA
CGCTTAGCACCAATCCACCCTGTATCCTGGGTATAGCCCTAAACGGCCAT
TGCCCATTACTCCCCGATTCACGCTCATAGTTTGGTTGCGATGTAAGTTC
AACAACTTTACATACACCTTGATAGCAACCAATGGTTTAAGTTTAACTTA
CGTCCTCCGGCTTTCATTTCCACCAGCTTTGCTTTCAACGTAACGTGAAG
GTTGAACCACCGGTCACTATTTGTTGTTGTTATTCTTATGTTACTATGGT
TGGGTATATTATATTTTAATCACCTTGAATTAAACCGCACAACAAACGAA
TATGTCATGGAAGGTGGCGCCACGCTGGTTTGCCAATAACTCCCTCTCAT
GAGGAACTACCCCTGAAGACGGTGGATAAATCTACTGCACCTCTCCCTCC
TGCCCTCGCTGCTCCCACTCTGGGCACAACACTCAGTGGGGTTGGCTTTG
AGGTTTGAAATGCCGCCACGGCTCCACCTCCCCCTTATACCCAGCTGCTC
GGTTGAAGCCTTCGTCTCGTTTCTGATCTAGCGGGTTCTTGACGCTTGCG
GGACGACCGCAATCGCCACCGGCACTACCGGGGTTGCAGCATTTGCCACT
GTCACAGCGAGTTTTCGACTATCGATACCTCCTGCTCCCTCCCTCAGTGC
GACAGCTTCAGTAATCGATGAAGCATATCCATCGATTCCTACATCGCACG
TTATAGTGGCAACTGCAACAGCCTCCTGCGGTGGTGCCGATGTCGTTGTC
TCCACAATCGTGCCCGTGTCAGCTCCAACATGCCCCGTCGCCACATCCGC
TGGTCGTGCGACTGCTGCAAATGCAATCGGCACCTCGCGTTCGGCATTTC
CGTTTTCACGAAGATCCTATTGGCTCCCTCCGTTGCCACCCTATTTGCGG
TGGTGTTGATTGTCGCCGCAATCCCACTCCCCTCTATCACCAGATCGGTC
GAGGCCTCGACCCCGTTTCCAATCTGTTGTATTCTTATCACGTAGGGGAC
AGCCACAATCGCTACTTCTGATGCTACCGGCGCCGCCGCATTCGCCAGTA
TGGCAGCGGGTCCTCTAGCCTCGATCCTGCCCGCCCCCTACGTTATCGCC
ACTGCATCAGCGGCCGGCGCACCTCCGCGTCGATTCTTCCATCAGACGCC
ATCGTGAGAGCAGCCACACGCGCTAGCGCCAGTGTCGTGATTGCCACAGC
CCTGCCAGCACAATCCCCCTGCCTACTCAGTCGCTACGTCAAGTGGCCGT
GCAATCGGTCCCTCACTTTTGGCTAGTGCCGGTGGTACGAACTTCCCTTC
AGCCTCTTCCGCTGCGACCACCACAACAGGTGATACGATGACATATTCCA
CTCTCTCCTACTCCGCCACCGCCGCTCTGCTACGGATGCCTCTACCGCCT
CCGCCACCACCTGCGATGGCGCAAGACCCTATTCCTTTGCTAATCGCTAA
GCCTAGACTGTCCGCTGGGGTTGTGGCTAGTCGCCCAACAACTCAGGCCA
TAGCTCTGCAGGTCCTCGCGGAAAGCACCCCGGTTTAGTGCGAAAGACGA
GCGTCGTCAATGTTTTGCTTCCTCTTGCCCTCGTGCCGCTGGTAGGGGCC
CAACCCCGCATCTGGTTTACTGAACAGGGAAATAAGGAAATACACAAATA
AATATAAAATCAAAATCCGAAACAAACACGAGCGTATCCGTAAACATACC
CTTCGTGGAGCGATAGCCACAACAGACAAGAATAATTAGCAGACAATACA
TACAGTGGTGTAGTTGATGCATCCATGAACTGAACTGACCCTGCCCTAAT
TTGACACATCCACGCACCTCTTTGAGGTCACAGACTGGATTGGTAACCGT
GTATAGAGAAGAGCATAGTTAGGCCTGATTTGTTAATGTAAGGAGCACAC
ACACACTAATATGCACTGTTTACTCAGGCTACAGATTGTGAATAATTCAG
ACGCACAAAATCATTGTTTACGTCCCATGATCTTCTTGCTCATGCTAATC
CAGCATGTTTCTTACCAACCTTACCTCCACCCGACGGTACGCATCTCTCT
TCCCTAAACCCCTCTTAGGGTCACTTAGAGTTTTTTCTCTGCGACGCTGC
CGACCTGGATGACCCAGACGGGGTGGTGACCCAGGGGTGCTTCAACATGC
ACCCGTTGGATCGAGCGGAAGATGATGGAGATGCGTCGCCCATCGACCCC
AATTATCCGGGAAGATACTTCCTTGACCCATCCTGCAAGTCTGCGGAAAC
GGGCCAGACTATCCTTCCCGGGGCTGAATCTGGAAACGTGGTGACGGCTC
GGTACCATCTCCCTTCCGGTATAACCTGCTCTCGCTGCATCGTGCAGATG
GCCTACTGTGAGTGTTGTTAGTGATTATGGTTGTGCGCACCTATCTACGA
TTGGGCTACCTTGCTTTAGCATCTCATTTGTTGACATTGCCAAAACTATC
CATCGCGTGGTGGGTGAGTCGCCACGAATTAGGAACATCGAAGAAGAAAA
ATAATACTCGAAATAGGTTTTAAACCTAGCGACAGGCAAGAAGTTGATTG
TGGAAGGTGCGATCATTAAACGACTTGTTATGGCAAGCAAAGTCGGGCTC
CAATAGTCGGCAAAGCAGTTCCGGAAGATTCGACTGCGTTTGGCGCATCC
TTCAGGATCATGCTGGATATTTGTATCCGTTTCACCCTACACCTGGGTGC
CGAAAAATGGTGACTACCGAGCACATAATTTCGCGTAATATTCCTCGTAC
CACGTTTACCTTCAATACAGACACCGGTAACTCTTGCATGCACCCGGGTT
ACGACGACTTCAACCCTACTTCGTGGCCCAGCGAGTGCGCCCCAAACAAA
GCAGACTGGATCCTTACGGGTCTGAGCATGTGTGGTGACGGCGACAGCTA
CCCGGAAGGTAGGTGACCCGTCGCGTGGTCGGAGTATTTCGATGCATTAG
AGAACCCTCGCCTCGTTCTCACCGTTTTGGCTACGTATAATGTTTCAGGA
CAGTAAGTGAAACAAATTCCACTACGATTGATTTCCTTGCACGCTGAGGA
GGCGTTTATACACCCGCGCCAGGCGATAACATTTATACACAACAATACAT
CAATATATTTGTTGCCAACCTCCAGCCGCCTTTTAAGTTGGCTTTTAGGT
ATGGATGTATTAATATTCCTCGATTGCATTCCCTCTGTGCTGCATTTCTA
TACATATTGTTTACTTGCAACAGAATATTGGAACTGCGCGGACATCGAGA
TCATGTCTGGTGAGTCGTCGGGATTCCACTAATGGGCAGTGACTGCCAAG
AGTTTGGCTTATTTACCTGGTCGAAGCTTACACGAGGAGATCAGCCCTGA
ACTCTCAATAAATAATTTGGTAAATATCAGTACTTATATCGTTGACCATG
ACTGGTAAAATTGCCCATACGCTACCTTGTAACATCCCCCATCAAGCTTG
ACCGGTCTTGCGCTGTTCTTGTGATGCTTGCTCACACAGATGGAACACCC
TCCGATTCTGCTCCAGCCCCAGCTCCGGAATCCGAGTCATCTGCTCCAAT
CGCTGGGGAGGCCTTCAAGCCAGAGACATTCGCGCCTCTGGTCGAAATGT
CCGCAATAGAGACGCCGGTGCCCGTCCAGGAGAGTGCCGCCAGAGAGACA
CCCGCGCCTACGCCCGAGTTTATTGTTTCAGGGACACCCACGCCTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig7331:4917..10164-

>mRNA_H-elongata_contig7331.15015.1 ID=mRNA_H-elongata_contig7331.15015.1|Name=mRNA_H-elongata_contig7331.15015.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1884bp|location=Sequence derived from alignment at H-elongata_contig7331:4917..10164- (Himanthalia elongata Himel1 dioecious)
ATGCCCATCGCTTCGGTCGTTGCCGCAGTATATGGTAACGGGGCTTGGCC
CCTCTTGGCTGTGTACGAGAGGGGAGAGATGGCGACCAATGGTAACTATC
TCGAGCCGGATTCGATTTCTGTTCGGCATGGGATTTGCGGAGATCCTGAA
CAGATGCCCATCGCTTCGGTCGTTGCCGCAGTATATGGTAACGGGGCTTG
GCCCCTCTTGGCTGTGTACGAGAGGGGAGAGATGGCGACCAATGGTAACT
ATCTCGAGCCGGATTCGATTTCTGTTCGGCATGGGATTTGCGGAGATCCT
GAACAGACGTCGGACGAGAGCTCCAACAGATACGGTAATGCGAACAGCTA
CTATCCCGTACTAGAGATCTACACGGAGGGGTCTGTGATGGAGATCAAGA
TCGTAGTGTCCACGACACATCATACGTCGGACGAGAGCTCCAACAGATAC
GGTAATGCGAACAGCTACTATCCCGTACTAGAGATCTACACGGAGGGGTC
TGTGATGGAGATCAAGATCGTAGTGTCCACGACACATCATGGTCACTTAG
AGTTTTTTCTCTGCGACGCTGCCGACCTGGATGACCCAGACGGGGTGGTG
ACCCAGGGGTGCTTCAACATGCACCCGTTGGATCGAGCGGAAGATGATGG
AGATGCGTCGCCCATCGACCCCAATTATCCGGGAAGATACTTCCTTGACC
CATCCTGCAAGTCTGCGGAAACGGGCCAGACTATCCTTCCCGGGGCTGAA
TCTGGAAACGTGGTGACGGCTCGGTACCATCTCCCTTCCGGTATAACCTG
CTCTCGCTGCATCGTGCAGATGGCCTACTGGTCACTTAGAGTTTTTTCTC
TGCGACGCTGCCGACCTGGATGACCCAGACGGGGTGGTGACCCAGGGGTG
CTTCAACATGCACCCGTTGGATCGAGCGGAAGATGATGGAGATGCGTCGC
CCATCGACCCCAATTATCCGGGAAGATACTTCCTTGACCCATCCTGCAAG
TCTGCGGAAACGGGCCAGACTATCCTTCCCGGGGCTGAATCTGGAAACGT
GGTGACGGCTCGGTACCATCTCCCTTCCGGTATAACCTGCTCTCGCTGCA
TCGTGCAGATGGCCTACTACACCGGTAACTCTTGCATGCACCCGGGTTAC
GACGACTTCAACCCTACTTCGTGGCCCAGCGAGTGCGCCCCAAACAAAGC
AGACTGGATCCTTACGGGTCTGAGCATGTGTGGTGACGGCGACAGCTACC
CGGAAGACACCGGTAACTCTTGCATGCACCCGGGTTACGACGACTTCAAC
CCTACTTCGTGGCCCAGCGAGTGCGCCCCAAACAAAGCAGACTGGATCCT
TACGGGTCTGAGCATGTGTGGTGACGGCGACAGCTACCCGGAAGAATATT
GGAACTGCGCGGACATCGAGATCATGTCTGAATATTGGAACTGCGCGGAC
ATCGAGATCATGTCTGATGGAACACCCTCCGATTCTGCTCCAGCCCCAGC
TCCGGAATCCGAGTCATCTGCTCCAATCGCTGGGGAGGCCTTCAAGCCAG
AGACATTCGCGCCTCTGGTCGAAATGTCCGCAATAGAGACGCCGGTGCCC
GTCCAGGAGAGTGCCGCCAGAGAGACACCCGCGCCTACGCCCGAGTTTAT
TGTTTCAGGGACACCCACGCCTGTTATGGAACACCCTCCGATTCTGCTCC
AGCCCCAGCTCCGGAATCCGAGTCATCTGCTCCAATCGCTGGGGAGGCCT
TCAAGCCAGAGACATTCGCGCCTCTGGTCGAAATGTCCGCAATAGAGACG
CCGGTGCCCGTCCAGGAGAGTGCCGCCAGAGAGACACCCGCGCCTACGCC
CGAGTTTATTGTTTCAGGGACACCCACGCCTGTT
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