mRNA_H-elongata_contig7294.14972.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7294.14972.1
Unique NamemRNA_H-elongata_contig7294.14972.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7294.14972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7294contigH-elongata_contig7294:787..1810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1024
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7294.14972.1prot_H-elongata_contig7294.14972.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7294 1059..1724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.2366803-UTR-H-elongata_contig7294:786..10581622931131.2366803-UTR-H-elongata_contig7294:786..1058Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7294 787..1058 +
1691679710.9229527-UTR-H-elongata_contig7294:786..10581691679710.9229527-UTR-H-elongata_contig7294:786..1058Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7294 787..1058 +
1622931131.2697623-UTR-H-elongata_contig7294:1724..18101622931131.2697623-UTR-H-elongata_contig7294:1724..1810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7294 1725..1810 +
1691679710.968656-UTR-H-elongata_contig7294:1724..18101691679710.968656-UTR-H-elongata_contig7294:1724..1810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7294 1725..1810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.2531593-CDS-H-elongata_contig7294:1058..17241622931131.2531593-CDS-H-elongata_contig7294:1058..1724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7294 1059..1724 +
1691679710.9469256-CDS-H-elongata_contig7294:1058..17241691679710.9469256-CDS-H-elongata_contig7294:1058..1724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7294 1059..1724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7294.14972.1

>prot_H-elongata_contig7294.14972.1 ID=prot_H-elongata_contig7294.14972.1|Name=mRNA_H-elongata_contig7294.14972.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp
MRLGHSLSPDSKRMPTPAYYSYPCFRLQHPHPCTCQRRCHFVRGRPRGQA
TRGFWSFRTGRGKGRVWRCPNLLEGKLEGETSGRRFAFDSWEQAAVLRLP
GVLTSSQLPQLPAWPAWPRGPSLPCPSYGAPGRILDGHPGSQTTRGAGTS
PPGRSCTISKNLSRRLRRLSRRGILLLLLHLRPWAQYRRSALYSSWRLPI
GLSRKTTKNFREIDPALSPWL*
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mRNA from alignment at H-elongata_contig7294:787..1810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7294.14972.1 ID=mRNA_H-elongata_contig7294.14972.1|Name=mRNA_H-elongata_contig7294.14972.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1024bp|location=Sequence derived from alignment at H-elongata_contig7294:787..1810+ (Himanthalia elongata Himel1 dioecious)
ACGCTGCTTTGTGCCCCCGCCATCGCCGCCATCGAAGCTTGCGCCGCAAG
CGCCAATCTCCCCGCCCGCCCCGCTTCCCACCTCACGATATCCTCGGTGC
CCGCGGGGTTTCGTGTATATCCGGGGGCTGTCTGTATCCGGGGACTGAAC
GGCGTCGCGCTTGCCGTCGCCTGTACCTCCGCCGAGCTTGCGCTGACTAA
TGATATTGACCATACCCTTGCGCTTGTGCGCTGCGCAAAAAGCGCGCTTG
CCTTCCCCCCGCAAACCGAAGGATGCGTCTCGGCCACAGTCTATCGCCCG
ACAGCAAACGGATGCCGACCCCGGCGTACTACTCTTACCCTTGCTTTCGA
TTGCAACACCCTCATCCTTGTACATGCCAACGCCGATGCCATTTCGTGCG
GGGAAGGCCCCGCGGCCAAGCCACACGGGGCTTCTGGTCATTCCGAACGG
GGCGGGGGAAGGGGAGGGTGTGGCGCTGCCCAAATCTTCTCGAGGGGAAG
CTAGAGGGCGAGACTTCCGGGCGGCGCTTTGCTTTTGATTCTTGGGAACA
GGCGGCGGTACTTCGCTTGCCCGGAGTGTTGACGTCATCACAGCTGCCGC
AGTTGCCTGCCTGGCCCGCTTGGCCTCGAGGACCAAGTTTACCATGCCCC
TCTTATGGTGCTCCCGGCAGAATTCTCGACGGCCACCCCGGAAGCCAAAC
GACGCGTGGAGCGGGCACATCGCCTCCCGGCAGATCTTGTACGATCTCGA
AAAATCTTTCGCGACGGTTACGGCGGCTATCACGACGGGGGATTCTTCTC
CTGCTGCTACACCTGCGGCCATGGGCTCAGTATCGCCGCTCAGCTCTGTA
CTCTTCCTGGCGGCTTCCGATAGGGTTATCGCGGAAAACGACGAAAAACT
TTCGAGAGATCGACCCCGCGCTTTCACCTTGGCTGTAGCCGCTTTCAGCT
TCAAAGAAACCGCGCGCGCCGGGCCGCCGACACCGCCACCGCTACCGTTG
CTGCTCACCCTATCTCGACCTAGG
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Coding sequence (CDS) from alignment at H-elongata_contig7294:787..1810+

>mRNA_H-elongata_contig7294.14972.1 ID=mRNA_H-elongata_contig7294.14972.1|Name=mRNA_H-elongata_contig7294.14972.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig7294:787..1810+ (Himanthalia elongata Himel1 dioecious)
ATGCGTCTCGGCCACAGTCTATCGCCCGACAGCAAACGGATGCCGACCCC
GGCGTACTACTCTTACCCTTGCTTTCGATTGCAACACCCTCATCCTTGTA
CATGCCAACGCCGATGCCATTTCGTGCGGGGAAGGCCCCGCGGCCAAGCC
ACACGGGGCTTCTGGTCATTCCGAACGGGGCGGGGGAAGGGGAGGGTGTG
GCGCTGCCCAAATCTTCTCGAGGGGAAGCTAGAGGGCGAGACTTCCGGGC
GGCGCTTTGCTTTTGATTCTTGGGAACAGGCGGCGGTACTTCGCTTGCCC
GGAGTGTTGACGTCATCACAGCTGCCGCAGTTGCCTGCCTGGCCCGCTTG
GCCTCGAGGACCAAGTTTACCATGCCCCTCTTATGGTGCTCCCGGCAGAA
TTCTCGACGGCCACCCCGGAAGCCAAACGACGCGTGGAGCGGGCACATCG
CCTCCCGGCAGATCTTGTACGATCTCGAAAAATCTTTCGCGACGGTTACG
GCGGCTATCACGACGGGGGATTCTTCTCCTGCTGCTACACCTGCGGCCAT
GGGCTCAGTATCGCCGCTCAGCTCTGTACTCTTCCTGGCGGCTTCCGATA
GGGTTATCGCGGAAAACGACGAAAAACTTTCGAGAGATCGACCCCGCGCT
TTCACCTTGGCTGTAGATGCGTCTCGGCCACAGTCTATCGCCCGACAGCA
AACGGATGCCGACCCCGGCGTACTACTCTTACCCTTGCTTTCGATTGCAA
CACCCTCATCCTTGTACATGCCAACGCCGATGCCATTTCGTGCGGGGAAG
GCCCCGCGGCCAAGCCACACGGGGCTTCTGGTCATTCCGAACGGGGCGGG
GGAAGGGGAGGGTGTGGCGCTGCCCAAATCTTCTCGAGGGGAAGCTAGAG
GGCGAGACTTCCGGGCGGCGCTTTGCTTTTGATTCTTGGGAACAGGCGGC
GGTACTTCGCTTGCCCGGAGTGTTGACGTCATCACAGCTGCCGCAGTTGC
CTGCCTGGCCCGCTTGGCCTCGAGGACCAAGTTTACCATGCCCCTCTTAT
GGTGCTCCCGGCAGAATTCTCGACGGCCACCCCGGAAGCCAAACGACGCG
TGGAGCGGGCACATCGCCTCCCGGCAGATCTTGTACGATCTCGAAAAATC
TTTCGCGACGGTTACGGCGGCTATCACGACGGGGGATTCTTCTCCTGCTG
CTACACCTGCGGCCATGGGCTCAGTATCGCCGCTCAGCTCTGTACTCTTC
CTGGCGGCTTCCGATAGGGTTATCGCGGAAAACGACGAAAAACTTTCGAG
AGATCGACCCCGCGCTTTCACCTTGGCTGTAG
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