mRNA_H-elongata_contig72902.14971.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72902.14971.1
Unique NamemRNA_H-elongata_contig72902.14971.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72902.14971.1 vs. uniprot
Match: A0A6H5J8E2_9PHAE (6-pyruvoyltetrahydropterin synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8E2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.140e-20
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 RGQVCEDGYVVDFGVVKKAMRKICKELNERFLCPMKSDALNITLTGAQV 147
            RG+VCEDGYVVDFG+VKK MRK+CK LNERFLCPM+SDAL+ITLTG+QV
Sbjct:  208 RGEVCEDGYVVDFGIVKKVMRKLCKGLNERFLCPMESDALDITLTGSQV 256
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BLAST of mRNA_H-elongata_contig72902.14971.1 vs. uniprot
Match: A0A329S7J5_9STRA (6-pyruvoyltetrahydropterin synthase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S7J5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.880e-12
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    4 GQVCEDGYVVDFGVVKKAMRKICKELNERFLCPMKSDALNITLTGAQV 147
            GQV  DGYVVDFG +K+  R ICK+LNE FL PMKSDAL I+  GA +
Sbjct:  130 GQVGSDGYVVDFGEIKRISRVICKDLNESFLVPMKSDALKISCDGANI 177
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BLAST of mRNA_H-elongata_contig72902.14971.1 vs. uniprot
Match: H3GQV0_PHYRM (6-pyruvoyltetrahydropterin synthase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQV0_PHYRM)

HSP 1 Score: 66.2 bits (160), Expect = 1.920e-11
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    4 GQVCEDGYVVDFGVVKKAMRKICKELNERFLCPMKSDALNITLTGAQV 147
            GQV  DGYV+DFG +KK  R ICK+LNE FL PM SDALNI+  G  V
Sbjct:  475 GQVGRDGYVLDFGEIKKISRVICKDLNESFLVPMNSDALNISFDGTNV 522
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BLAST of mRNA_H-elongata_contig72902.14971.1 vs. uniprot
Match: A0A2D4BT60_PYTIN (6-pyruvoyltetrahydropterin synthase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BT60_PYTIN)

HSP 1 Score: 66.2 bits (160), Expect = 1.920e-11
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 GQVCEDGYVVDFGVVKKAMRKICKELNERFLCPMKSDALNITLTGAQV 147
            GQV  DGYVVDFG +KK  R ICK+LNE FL PM SDAL IT  G  V
Sbjct:  500 GQVGPDGYVVDFGEIKKITRVICKDLNETFLVPMNSDALKITFDGTNV 547
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BLAST of mRNA_H-elongata_contig72902.14971.1 vs. uniprot
Match: G4YL66_PHYSP (6-pyruvoyltetrahydropterin synthase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YL66_PHYSP)

HSP 1 Score: 64.7 bits (156), Expect = 3.130e-11
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 GQVCEDGYVVDFGVVKKAMRKICKELNERFLCPMKSDALNITLTGAQV 147
            GQV  DGYVVDFG +KK  R ICK+LNE FL PM SDAL I+  G  V
Sbjct:  119 GQVGPDGYVVDFGEIKKISRVICKDLNESFLVPMNSDALKISFDGTNV 166
[Close]
BLAST of mRNA_H-elongata_contig72902.14971.1 vs. uniprot
Match: D0MWX1_PHYIT (6-pyruvoyltetrahydropterin synthase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MWX1_PHYIT)

HSP 1 Score: 64.7 bits (156), Expect = 3.230e-11
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 GQVCEDGYVVDFGVVKKAMRKICKELNERFLCPMKSDALNITLTGAQV 147
            GQV  DGYVVDFG +KK  R ICK+LNE FL PM SDAL I+  G  V
Sbjct:  122 GQVGPDGYVVDFGEIKKISRVICKDLNESFLVPMNSDALKISFDGTNV 169
[Close]
BLAST of mRNA_H-elongata_contig72902.14971.1 vs. uniprot
Match: A0A225WPC1_9STRA (6-pyruvoyltetrahydropterin synthase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WPC1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.260e-11
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 GQVCEDGYVVDFGVVKKAMRKICKELNERFLCPMKSDALNITLTGAQV 147
            GQV  DGYVVDFG +KK  R ICK+LNE FL PM SDAL I+  G  V
Sbjct:  123 GQVGPDGYVVDFGEIKKISRVICKDLNESFLVPMNSDALKISFDGTNV 170
[Close]
BLAST of mRNA_H-elongata_contig72902.14971.1 vs. uniprot
Match: A0A329RK55_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RK55_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.620e-11
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 GQVCEDGYVVDFGVVKKAMRKICKELNERFLCPMKSDALNITLTGAQV 147
            GQV  DGYVVDFG +KK  R ICK+LNE FL PM SDAL I+  G  V
Sbjct:  204 GQVGPDGYVVDFGEIKKISRVICKDLNESFLVPMNSDALKISFDGTNV 251
[Close]
BLAST of mRNA_H-elongata_contig72902.14971.1 vs. uniprot
Match: V9E4T1_PHYPR (6-pyruvoyltetrahydropterin synthase n=10 Tax=Phytophthora TaxID=4783 RepID=V9E4T1_PHYPR)

HSP 1 Score: 64.7 bits (156), Expect = 5.640e-11
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 GQVCEDGYVVDFGVVKKAMRKICKELNERFLCPMKSDALNITLTGAQV 147
            GQV  DGYVVDFG +KK  R ICK+LNE FL PM SDAL I+  G  V
Sbjct:  205 GQVGPDGYVVDFGEIKKISRVICKDLNESFLVPMNSDALKISFDGTNV 252
[Close]
BLAST of mRNA_H-elongata_contig72902.14971.1 vs. uniprot
Match: V9E4U8_PHYPR (6-pyruvoyltetrahydropterin synthase n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=V9E4U8_PHYPR)

HSP 1 Score: 64.7 bits (156), Expect = 5.780e-11
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 GQVCEDGYVVDFGVVKKAMRKICKELNERFLCPMKSDALNITLTGAQV 147
            GQV  DGYVVDFG +KK  R ICK+LNE FL PM SDAL I+  G  V
Sbjct:  205 GQVGPDGYVVDFGEIKKISRVICKDLNESFLVPMNSDALKISFDGTNV 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72902.14971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8E2_9PHAE1.140e-2083.676-pyruvoyltetrahydropterin synthase n=1 Tax=Ectoca... [more]
A0A329S7J5_9STRA6.880e-1264.586-pyruvoyltetrahydropterin synthase n=2 Tax=Phytop... [more]
H3GQV0_PHYRM1.920e-1164.586-pyruvoyltetrahydropterin synthase n=1 Tax=Phytop... [more]
A0A2D4BT60_PYTIN1.920e-1166.676-pyruvoyltetrahydropterin synthase n=1 Tax=Pythiu... [more]
G4YL66_PHYSP3.130e-1164.586-pyruvoyltetrahydropterin synthase n=1 Tax=Phytop... [more]
D0MWX1_PHYIT3.230e-1164.586-pyruvoyltetrahydropterin synthase n=1 Tax=Phytop... [more]
A0A225WPC1_9STRA3.260e-1164.586-pyruvoyltetrahydropterin synthase n=2 Tax=Phytop... [more]
A0A329RK55_9STRA5.620e-1164.586-pyruvoyltetrahydropterin synthase n=1 Tax=Phytop... [more]
V9E4T1_PHYPR5.640e-1164.586-pyruvoyltetrahydropterin synthase n=10 Tax=Phyto... [more]
V9E4U8_PHYPR5.780e-1164.586-pyruvoyltetrahydropterin synthase n=8 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72902contigH-elongata_contig72902:131..895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue3.6e-09
Seed eggNOG ortholog164328.Phyra79196
KEGG rclassRC01117
KEGG koko:K22101
KEGG ReactionR04286,R11719
KEGG Pathwayko00790,map00790
KEGG ModuleM00841
EggNOG free text desc.DUF2407 C-terminal domain
EggNOG OGs2S1HP@2759,3QJAD@4776,COG0720@1
EC4.1.2.60,4.2.3.12
COG Functional cat.H
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.166175-CDS-H-elongata_contig72902:130..1841622931131.166175-CDS-H-elongata_contig72902:130..184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72902 131..184 +
1691679710.8989758-CDS-H-elongata_contig72902:130..1841691679710.8989758-CDS-H-elongata_contig72902:130..184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72902 131..184 +
1622931131.190792-CDS-H-elongata_contig72902:802..8951622931131.190792-CDS-H-elongata_contig72902:802..895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72902 803..895 +
1691679710.9098556-CDS-H-elongata_contig72902:802..8951691679710.9098556-CDS-H-elongata_contig72902:802..895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72902 803..895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72902.14971.1prot_H-elongata_contig72902.14971.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72902 131..895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72902.14971.1

>prot_H-elongata_contig72902.14971.1 ID=prot_H-elongata_contig72902.14971.1|Name=mRNA_H-elongata_contig72902.14971.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
RGQVCEDGYVVDFGVVKKAMRKICKELNERFLCPMKSDALNITLTGAQV
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mRNA from alignment at H-elongata_contig72902:131..895+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72902.14971.1 ID=mRNA_H-elongata_contig72902.14971.1|Name=mRNA_H-elongata_contig72902.14971.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=765bp|location=Sequence derived from alignment at H-elongata_contig72902:131..895+ (Himanthalia elongata Himel1 dioecious)
CGTGGACAGGTGTGCGAGGACGGTTACGTGGTTGACTTCGGCGTCGTGAA
AAAGGTGACGATTTTATGTGTCGAATGAAATCAATTCGATTGGGTTTCGT
CCAATCACAATACGATACTTTCAGATTCGCCAGCTATCGAGCCCCTCAAC
CCCAATCCCTCATCCTAAATAAATTTACAACGTTTTTTTTGTTAATGAGC
GGTCATTTTTTATTTTTTTATTCTGAAGCAAATAGCAAGAAGTGGTTGCT
CGTTGCTCCTGTCTGCAAATATTAAATGCTGTATATTTCTTGTTTAGATG
TTCGGGGTCAGATCGGCGAAAACCATATATCGCCACGTCGCGGCTTTTTG
GCGATTAACCGTTAAATTGTGCCTAGGCCACCCAGTCATAGCTATAAGGG
AGAATCGATCCCGAAGGGTGGAAAAAGAGCCATAGGCACGAAACTGTATT
TCCCCCAAACCGACCTGGATTACAAAAAAAAAGGCGCATAATAATTGTTT
TCTTTGATTAAATTGGCGTCGAATGAAAAAAAATACAGTGGTAAAAGCTG
CTTCATTAGAAATCTAAATCGCTCGAAGTAGAGAGGAAGCGAGATGACTC
CCCCCTCCCAAAAGTTGACGCTGCGTTTGCTTGTCCGCTGCTCTTATTAC
TATTACTATTACTCTACTCCAGGCCATGCGCAAGATTTGCAAGGAGCTTA
ACGAGCGGTTTCTCTGCCCCATGAAAAGCGATGCACTCAACATTACTCTT
ACGGGCGCCCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig72902:131..895+

>mRNA_H-elongata_contig72902.14971.1 ID=mRNA_H-elongata_contig72902.14971.1|Name=mRNA_H-elongata_contig72902.14971.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig72902:131..895+ (Himanthalia elongata Himel1 dioecious)
CGTGGACAGGTGTGCGAGGACGGTTACGTGGTTGACTTCGGCGTCGTGAA
AAAGCGTGGACAGGTGTGCGAGGACGGTTACGTGGTTGACTTCGGCGTCG
TGAAAAAGGCCATGCGCAAGATTTGCAAGGAGCTTAACGAGCGGTTTCTC
TGCCCCATGAAAAGCGATGCACTCAACATTACTCTTACGGGCGCCCAGGT
AGCCATGCGCAAGATTTGCAAGGAGCTTAACGAGCGGTTTCTCTGCCCCA
TGAAAAGCGATGCACTCAACATTACTCTTACGGGCGCCCAGGTA
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