mRNA_H-elongata_contig72385.14907.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72385.14907.1
Unique NamemRNA_H-elongata_contig72385.14907.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72385.14907.1 vs. uniprot
Match: A0A6H5K0L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L0_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 4.450e-51
Identity = 83/130 (63.85%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:    7 PEFHTNLTTTASIALYRRFTARIVRIFIKVIPSGKMTCVWMDASWPVSYLYDMWRMNSAKGTS------EDIFMFLPTMAGQWSLDNQNFPETDTTLGVHTGNIPISTYNLTTANSTVTVLCTTFFSLVK 378
            PE HT+LTT+A+I LYR      +RIF+KVIP G  TC+WMD+SWPVSYL+D+WR N+A+G +       D FM LPT+ G W+LDN+N PETDTTLGVHTGN+P+STYNLTT  STVTVLCTTF S +K
Sbjct:  175 PELHTDLTTSAAITLYRSIVGSTIRIFVKVIPCGTATCLWMDSSWPVSYLFDLWRANAAEGCTCVFMGGIDAFMCLPTIPGLWNLDNRNLPETDTTLGVHTGNLPLSTYNLTTPKSTVTVLCTTFLSKIK 304
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72385.14907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0L0_9PHAE4.450e-5163.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72385contigH-elongata_contig72385:1025..2633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size480
Cds size480
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72385.14907.1prot_H-elongata_contig72385.14907.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72385 1025..2633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931124.8984718-CDS-H-elongata_contig72385:1024..11171622931124.8984718-CDS-H-elongata_contig72385:1024..1117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72385 1025..1117 +
1691679708.1852844-CDS-H-elongata_contig72385:1024..11171691679708.1852844-CDS-H-elongata_contig72385:1024..1117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72385 1025..1117 +
1622931124.913778-CDS-H-elongata_contig72385:1228..13291622931124.913778-CDS-H-elongata_contig72385:1228..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72385 1229..1329 +
1691679708.1937857-CDS-H-elongata_contig72385:1228..13291691679708.1937857-CDS-H-elongata_contig72385:1228..1329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72385 1229..1329 +
1622931124.9330552-CDS-H-elongata_contig72385:1611..17281622931124.9330552-CDS-H-elongata_contig72385:1611..1728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72385 1612..1728 +
1691679708.201933-CDS-H-elongata_contig72385:1611..17281691679708.201933-CDS-H-elongata_contig72385:1611..1728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72385 1612..1728 +
1622931124.9534867-CDS-H-elongata_contig72385:2075..21421622931124.9534867-CDS-H-elongata_contig72385:2075..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72385 2076..2142 +
1691679708.2135334-CDS-H-elongata_contig72385:2075..21421691679708.2135334-CDS-H-elongata_contig72385:2075..2142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72385 2076..2142 +
1622931124.9737282-CDS-H-elongata_contig72385:2531..26331622931124.9737282-CDS-H-elongata_contig72385:2531..2633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72385 2532..2633 +
1691679708.224815-CDS-H-elongata_contig72385:2531..26331691679708.224815-CDS-H-elongata_contig72385:2531..2633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72385 2532..2633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72385.14907.1

>prot_H-elongata_contig72385.14907.1 ID=prot_H-elongata_contig72385.14907.1|Name=mRNA_H-elongata_contig72385.14907.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
MTPEFHTNLTTTASIALYRRFTARIVRIFIKVIPSGKMTCVWMDASWPVS
YLYDMWRMNSAKGTSEDIFMFLPTMAGQWSLDNQNFPETDTTLGVHTGNI
PISTYNLTTANSTVTVLCTTFFSLVKTKESIKQYLVCEVGVEETAIMEIF
SHLVGCPEHP
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mRNA from alignment at H-elongata_contig72385:1025..2633+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72385.14907.1 ID=mRNA_H-elongata_contig72385.14907.1|Name=mRNA_H-elongata_contig72385.14907.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1609bp|location=Sequence derived from alignment at H-elongata_contig72385:1025..2633+ (Himanthalia elongata Himel1 dioecious)
ATGACGCCAGAGTTCCACACGAATCTCACCACGACGGCGTCGATTGCGCT
CTACCGCCGTTTCACGGCAAGAATCGTCCGGATTTTTATCAAGGTGGCCA
AGTTGGCATGCAGCTAGATTGGAGAGCAGACAATGGATTCCGCGACTAAT
ACCGTCTACGGTAAGTTTTAACCTACGTACTGCATCAACTACATGTTATT
CCAGGTAATACCGTCTGGAAAGATGACCTGCGTCTGGATGGACGCTTCCT
GGCCGGTGTCGTACCTGTACGATATGTGGAGAATGAACTCCGCGAAGGGA
ACGTCGTAAGGAACCCGCCATATCACGTGGCCTTTTTCAGGGGAATCATT
GTAACACTCGCCTGCACCGCAAGCGCTGAACATAAATGCACTACCTGCAA
CAAGGCATAAATAGGGTAAATACATCGTAGTAGCCTTGTACCATGGTCCC
TGATTATTGCCATAGCAGGGTTGTGTCACAGTGCAACGTCATGTTGCCTT
CGGGTGTGAAACTCAGATGATGCCACGTCGTGTTGCCTTCGGGCGTAGGA
AAGTATGTAAGTAATATTCCGCCGCACCACACAACAGCGAAGATATATTC
ATGTTCCTCCCAACGATGGCCGGCCAGTGGAGCCTCGACAATCAAAATTT
TCCAGAAACGGACACCACCCTAGGGGTACACACGGGAAATATTCCGATAT
CCACGTGAGGTCAATTCGTTAAAAGGCGTTGTGGCTGAGAAGTCGTACAT
GAAACAACCTTTGTCATATCATTCTTGCTCGGGCAAGGCTTGAGGGCCAT
TTCGAACGATCACGGCTCATTTCAGCCCTTCAAGTCGTTGTTACCGTGGG
AAAGGTAACGGGGTAACGTGTTATGAGTCAACCATGATCCAGCGGGGGAA
AACATATATCTTATAGAATTGGCCTTGATCCTCATGAGATGTAGAAATAA
TTTCGAATGCCTCCGAGGCCGGGTGTGCCCTCTTTTTCTCTATGGGGGTG
TCTCATCGGAGTTTGACAACATCTTTCTTGCTCACACCCTATACTCTGCA
GGTACAATCTGACAACCGCAAACTCGACGGTGACAGTGCTGTGCACCACT
TTCTTCAGCCTGGTCAAGGTCAGCTCATTATACGAGAACAAAGCCGTCGT
GTTGACCACACCGGGGGGTACTGTTACTCTGAAACTAGCTTTGTCCGCAT
TTTGTCCTTCAAGAGATGCACAGGATAATTCGCTCGATGCTCGATCGTTC
TCCTTTGGGTTGTAGTTGGTATGTCACCTGGATGGCTCGATCAACAGCGT
GAGCACGCATTCATTATTAGCTGGTCACACTCTGCGCGGTGATTCCCAGC
TTCGCGAAACCGCGTACAGTGTTAAAATATATGTTATGTTTGCTGCTATG
ATGTCTATATTTATATTGTTCTTATATTCCCCGTTATTATTGTAAAACGG
TAAAATATACCGTACGCCTTCCGACTCCACTCCGATCTTGCAACCGCAAA
TTTATAGACGAAGGAGAGCATCAAACAGTACCTCGTTTGCGAAGTCGGAG
TTGAGGAAACAGCCATCATGGAAATTTTTAGCCACCTGGTGGGATGCCCA
GAACACCCG
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Coding sequence (CDS) from alignment at H-elongata_contig72385:1025..2633+

>mRNA_H-elongata_contig72385.14907.1 ID=mRNA_H-elongata_contig72385.14907.1|Name=mRNA_H-elongata_contig72385.14907.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig72385:1025..2633+ (Himanthalia elongata Himel1 dioecious)
ATGACGCCAGAGTTCCACACGAATCTCACCACGACGGCGTCGATTGCGCT
CTACCGCCGTTTCACGGCAAGAATCGTCCGGATTTTTATCAAGATGACGC
CAGAGTTCCACACGAATCTCACCACGACGGCGTCGATTGCGCTCTACCGC
CGTTTCACGGCAAGAATCGTCCGGATTTTTATCAAGGTAATACCGTCTGG
AAAGATGACCTGCGTCTGGATGGACGCTTCCTGGCCGGTGTCGTACCTGT
ACGATATGTGGAGAATGAACTCCGCGAAGGGAACGTCGTAATACCGTCTG
GAAAGATGACCTGCGTCTGGATGGACGCTTCCTGGCCGGTGTCGTACCTG
TACGATATGTGGAGAATGAACTCCGCGAAGGGAACGTCCGAAGATATATT
CATGTTCCTCCCAACGATGGCCGGCCAGTGGAGCCTCGACAATCAAAATT
TTCCAGAAACGGACACCACCCTAGGGGTACACACGGGAAATATTCCGATA
TCCACCGAAGATATATTCATGTTCCTCCCAACGATGGCCGGCCAGTGGAG
CCTCGACAATCAAAATTTTCCAGAAACGGACACCACCCTAGGGGTACACA
CGGGAAATATTCCGATATCCACGTACAATCTGACAACCGCAAACTCGACG
GTGACAGTGCTGTGCACCACTTTCTTCAGCCTGGTCAAGGTACAATCTGA
CAACCGCAAACTCGACGGTGACAGTGCTGTGCACCACTTTCTTCAGCCTG
GTCAAGACGAAGGAGAGCATCAAACAGTACCTCGTTTGCGAAGTCGGAGT
TGAGGAAACAGCCATCATGGAAATTTTTAGCCACCTGGTGGGATGCCCAG
AACACCCGACGAAGGAGAGCATCAAACAGTACCTCGTTTGCGAAGTCGGA
GTTGAGGAAACAGCCATCATGGAAATTTTTAGCCACCTGGTGGGATGCCC
AGAACACCCG
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