mRNA_H-elongata_contig72291.14902.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72291.14902.1
Unique NamemRNA_H-elongata_contig72291.14902.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72291.14902.1 vs. uniprot
Match: A0A2D4PWC3_MICSU (Uncharacterized protein (Fragment) n=1 Tax=Micrurus surinamensis TaxID=129470 RepID=A0A2D4PWC3_MICSU)

HSP 1 Score: 86.3 bits (212), Expect = 4.560e-20
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 SFHKSGNFLLSSSADASLKIWDLREGRLMYTLKGHSGPVKACAFSPDGTRFASGGRDGLVMSWRSHLASRFVDE 222
            SFH SGNFL+++S D +LKI DL EGRL+YTL GH GPV + +FS DG  FASGG D  V+ W+++  S  +++
Sbjct:   22 SFHPSGNFLITASNDGTLKIMDLIEGRLIYTLHGHEGPVLSVSFSKDGETFASGGTDTQVLLWKTNFDSSVLEK 95
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BLAST of mRNA_H-elongata_contig72291.14902.1 vs. uniprot
Match: A0A452S4D9_URSAM (POC1 centriolar protein A n=1 Tax=Ursus americanus TaxID=9643 RepID=A0A452S4D9_URSAM)

HSP 1 Score: 84.7 bits (208), Expect = 1.030e-18
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 SFHKSGNFLLSSSADASLKIWDLREGRLMYTLKGHSGPVKACAFSPDGTRFASGGRDGLVMSWRSHL 201
            SFH SGN+LL++S+D++LKI DL EGRL+YTL GH GP    AFS  G  FASGG D  VM W+S+ 
Sbjct:   30 SFHPSGNYLLTASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNF 96
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BLAST of mRNA_H-elongata_contig72291.14902.1 vs. uniprot
Match: A0A803VML2_FICAL (POC1 centriolar protein A n=1 Tax=Ficedula albicollis TaxID=59894 RepID=A0A803VML2_FICAL)

HSP 1 Score: 84.7 bits (208), Expect = 1.190e-18
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 SFHKSGNFLLSSSADASLKIWDLREGRLMYTLKGHSGPVKACAFSPDGTRFASGGRDGLVMSWRSHL 201
            SFH SGN+L+++S+D++LKI DL EGRL+YTL GH GP    AFS DG  FASGG D  VM W+++ 
Sbjct:   21 SFHPSGNYLVTASSDSTLKILDLLEGRLLYTLHGHQGPATCVAFSRDGDLFASGGSDEQVMVWKTNF 87
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BLAST of mRNA_H-elongata_contig72291.14902.1 vs. uniprot
Match: A0A814R7C9_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A814R7C9_9BILA)

HSP 1 Score: 85.5 bits (210), Expect = 1.350e-18
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 FHKSGNFLLSSSADASLKIWDLREGRLMYTLKGHSGPVKACAFSPDGTRFASGGRDGLVMSWRSHL 201
            FH +GNFLLS+S+DA+LK++DL EGRL+YTL GH GP  + AFS  G  FASGG+D  V+ W+++ 
Sbjct:   15 FHPNGNFLLSASSDATLKVFDLLEGRLIYTLHGHQGPAMSVAFSKQGDYFASGGQDQQVLVWKTNF 80
[Close]
BLAST of mRNA_H-elongata_contig72291.14902.1 vs. uniprot
Match: A0A672SJB8_SINGR (POC1 centriolar protein B n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672SJB8_SINGR)

HSP 1 Score: 86.7 bits (213), Expect = 1.870e-18
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 SFHKSGNFLLSSSADASLKIWDLREGRLMYTLKGHSGPVKACAFSPDGTRFASGGRDGLVMSWRSHL 201
            SFH SGN+++S S+D+++KI DL EGRL+YTL GH GPV A AFS DG  FASGG D  V+ W+++ 
Sbjct:  225 SFHPSGNYMISGSSDSTMKILDLLEGRLIYTLHGHKGPVLAVAFSRDGDLFASGGADSQVLMWKTNF 291
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BLAST of mRNA_H-elongata_contig72291.14902.1 vs. uniprot
Match: Q8BJN7_MOUSE (Uncharacterized protein n=1 Tax=Mus musculus TaxID=10090 RepID=Q8BJN7_MOUSE)

HSP 1 Score: 84.0 bits (206), Expect = 2.130e-18
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 SFHKSGNFLLSSSADASLKIWDLREGRLMYTLKGHSGPVKACAFSPDGTRFASGGRDGLVMSWRSHL 201
            SFH SGN+L+++S+D++LKI DL EGRL+YTL GH GP    AFS  G  FASGG D  VM W+S+ 
Sbjct:   34 SFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNF 100
[Close]
BLAST of mRNA_H-elongata_contig72291.14902.1 vs. uniprot
Match: A0A672SIZ9_SINGR (POC1 centriolar protein B n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672SIZ9_SINGR)

HSP 1 Score: 86.7 bits (213), Expect = 2.880e-18
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 SFHKSGNFLLSSSADASLKIWDLREGRLMYTLKGHSGPVKACAFSPDGTRFASGGRDGLVMSWRSHL 201
            SFH SGN+++S S+D+++KI DL EGRL+YTL GH GPV A AFS DG  FASGG D  V+ W+++ 
Sbjct:  228 SFHPSGNYMISGSSDSTMKILDLLEGRLIYTLHGHKGPVLAVAFSRDGDLFASGGADSQVLMWKTNF 294
[Close]
BLAST of mRNA_H-elongata_contig72291.14902.1 vs. uniprot
Match: A0A267FPY4_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267FPY4_9PLAT)

HSP 1 Score: 84.3 bits (207), Expect = 3.050e-18
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    4 FHKSGNFLLSSSADASLKIWDLREGRLMYTLKGHSGPVKACAFSPDGTRFASGGRDGLVMSWRSHL 201
            FH SGNFLLS+  D++L+++DL EGRL+YTL+GH G V AC+FS  G  FASGG D  V  WR++ 
Sbjct:   20 FHPSGNFLLSAGDDSTLRLYDLLEGRLIYTLRGHDGAVTACSFSVCGANFASGGADQQVFLWRTNF 85
[Close]
BLAST of mRNA_H-elongata_contig72291.14902.1 vs. uniprot
Match: UPI000FCCE20F (POC1 centriolar protein homolog A n=1 Tax=Neopelma chrysocephalum TaxID=114329 RepID=UPI000FCCE20F)

HSP 1 Score: 82.8 bits (203), Expect = 4.380e-18
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    1 SFHKSGNFLLSSSADASLKIWDLREGRLMYTLKGHSGPVKACAFSPDGTRFASGGRDGLVMSWRSHLASRFVD 219
            SFH SGN+L+++S D++LKI DL EGRL+YTL GH GP    AFS  G  FASGG D  VM W+++  + + D
Sbjct:   19 SFHPSGNYLVTASNDSTLKILDLLEGRLLYTLHGHQGPATCVAFSRSGDLFASGGSDEQVMVWKTNFDADYGD 91
[Close]
BLAST of mRNA_H-elongata_contig72291.14902.1 vs. uniprot
Match: A0A8E0SB91_9TREM (POC1 centriolar protein A (Fragment) n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0SB91_9TREM)

HSP 1 Score: 84.0 bits (206), Expect = 4.430e-18
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    1 SFHKSGNFLLSSSADASLKIWDLREGRLMYTLKGHSGPVKACAFSPDGTRFASGGRDGLVMSWRSHLASRFVD 219
            S H +G+FLLS+S DA+LKI+DL EGR +YTL+GH+GPV A AFS  G  FASGG D  V  W+++  + F +
Sbjct:   10 SCHPNGHFLLSASEDATLKIFDLLEGRPLYTLQGHTGPVTAAAFSASGDHFASGGSDEQVFLWKTNFDAYFSE 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72291.14902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4PWC3_MICSU4.560e-2054.05Uncharacterized protein (Fragment) n=1 Tax=Micruru... [more]
A0A452S4D9_URSAM1.030e-1859.70POC1 centriolar protein A n=1 Tax=Ursus americanus... [more]
A0A803VML2_FICAL1.190e-1858.21POC1 centriolar protein A n=1 Tax=Ficedula albicol... [more]
A0A814R7C9_9BILA1.350e-1857.58Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A672SJB8_SINGR1.870e-1858.21POC1 centriolar protein B n=1 Tax=Sinocyclocheilus... [more]
Q8BJN7_MOUSE2.130e-1858.21Uncharacterized protein n=1 Tax=Mus musculus TaxID... [more]
A0A672SIZ9_SINGR2.880e-1858.21POC1 centriolar protein B n=1 Tax=Sinocyclocheilus... [more]
A0A267FPY4_9PLAT3.050e-1857.58Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
UPI000FCCE20F4.380e-1853.42POC1 centriolar protein homolog A n=1 Tax=Neopelma... [more]
A0A8E0SB91_9TREM4.430e-1854.79POC1 centriolar protein A (Fragment) n=1 Tax=Fasci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72291contigH-elongata_contig72291:2658..3142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score84.3
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog10029.XP_007617624.1
Preferred namePOC1A
KEGG koko:K16482
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000922,GO:0001501,GO:0002062,GO:0002063,GO:0003413,GO:0003416,GO:0003417,GO:0003418,GO:0003431,GO:0003433,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005856,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0007276,GO:0007283,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0035265,GO:0036064,GO:0040007,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045787,GO:0046605,GO:0046607,GO:0048232,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048609,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051216,GO:0051493,GO:0051495,GO:0051704,GO:0051726,GO:0060271,GO:0060348,GO:0060349,GO:0060350,GO:0060351,GO:0061448,GO:0065007,GO:0070507,GO:0070925,GO:0071840,GO:0090068,GO:0098868,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902850,GO:1903047,GO:1905515
EggNOG free text desc.POC1 centriolar protein homolog A
EggNOG OGs2CMZ3@1,2QSVJ@2759,35GJ9@314146,38CVK@33154,3B94W@33208,3CZM5@33213,3JG17@40674,484Q6@7711,48WW2@7742,4PVZ3@9989
COG Functional cat.S
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931124.6338027-CDS-H-elongata_contig72291:2657..28221622931124.6338027-CDS-H-elongata_contig72291:2657..2822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72291 2658..2822 -
1691679708.0995853-CDS-H-elongata_contig72291:2657..28221691679708.0995853-CDS-H-elongata_contig72291:2657..2822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72291 2658..2822 -
1622931124.645122-CDS-H-elongata_contig72291:3085..31421622931124.645122-CDS-H-elongata_contig72291:3085..3142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72291 3086..3142 -
1691679708.1112826-CDS-H-elongata_contig72291:3085..31421691679708.1112826-CDS-H-elongata_contig72291:3085..3142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72291 3086..3142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72291.14902.1prot_H-elongata_contig72291.14902.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72291 2658..3142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72291.14902.1

>prot_H-elongata_contig72291.14902.1 ID=prot_H-elongata_contig72291.14902.1|Name=mRNA_H-elongata_contig72291.14902.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
SFHKSGNFLLSSSADASLKIWDLREGRLMYTLKGHSGPVKACAFSPDGTR
FASGGRDGLVMSWRSHLASRFVDE
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mRNA from alignment at H-elongata_contig72291:2658..3142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72291.14902.1 ID=mRNA_H-elongata_contig72291.14902.1|Name=mRNA_H-elongata_contig72291.14902.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=485bp|location=Sequence derived from alignment at H-elongata_contig72291:2658..3142- (Himanthalia elongata Himel1 dioecious)
AGCTTTCACAAGTCTGGAAACTTCCTGCTCTCTTCGTCAGCGGACGCTAG
CCTTAAGGTAACCCATCACGCTATTTCAACGGACTGGGGTACTATCTTGG
CGTTTGCGATAATTTGTATTCCTGTAGTCACAGGCGTGTCAAACGCTGGG
TTTCTCGAACACCTCAGGGAGACGGGGAGGAGGGGGTGTTCGTAAGCCCC
CCTCAGCCAGCACATCACCGCGTTGGGCGAGGCACCCAAATCAACTCATA
CTTTTTTCCATTTTTTTCCTCTCCTTCACCCCCTTGTAACTATGTTACCC
TTCCGTGCTCGAGACACAAGATCTGGGACCTGCGCGAGGGACGACTGATG
TACACACTTAAAGGACACTCTGGCCCCGTGAAAGCCTGTGCCTTTAGCCC
CGACGGCACCCGCTTTGCCTCTGGAGGTCGCGACGGGCTAGTGATGTCCT
GGCGGAGCCACCTCGCATCGAGGTTCGTAGATGAA
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Coding sequence (CDS) from alignment at H-elongata_contig72291:2658..3142-

>mRNA_H-elongata_contig72291.14902.1 ID=mRNA_H-elongata_contig72291.14902.1|Name=mRNA_H-elongata_contig72291.14902.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig72291:2658..3142- (Himanthalia elongata Himel1 dioecious)
AGCTTTCACAAGTCTGGAAACTTCCTGCTCTCTTCGTCAGCGGACGCTAG
CCTTAAGAGCTTTCACAAGTCTGGAAACTTCCTGCTCTCTTCGTCAGCGG
ACGCTAGCCTTAAGATCTGGGACCTGCGCGAGGGACGACTGATGTACACA
CTTAAAGGACACTCTGGCCCCGTGAAAGCCTGTGCCTTTAGCCCCGACGG
CACCCGCTTTGCCTCTGGAGGTCGCGACGGGCTAGTGATGTCCTGGCGGA
GCCACCTCGCATCGAGGTTCGTAGATGAAATCTGGGACCTGCGCGAGGGA
CGACTGATGTACACACTTAAAGGACACTCTGGCCCCGTGAAAGCCTGTGC
CTTTAGCCCCGACGGCACCCGCTTTGCCTCTGGAGGTCGCGACGGGCTAG
TGATGTCCTGGCGGAGCCACCTCGCATCGAGGTTCGTAGATGAA
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