mRNA_H-elongata_contig7228.14900.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7228.14900.1
Unique NamemRNA_H-elongata_contig7228.14900.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7228.14900.1 vs. uniprot
Match: D8LLV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV5_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 3.350e-7
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:  265 ADVAMAGGLLLTSEDYTAHVMELRDELEEAWSKDEKVAALKVTVQ 399
            A   MAGGLL+T E+Y AHV  L+++LE AW ++EKVAALKVTVQ
Sbjct:  386 AGKGMAGGLLVTPEEYVAHVSGLKEDLEVAWFREEKVAALKVTVQ 430
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BLAST of mRNA_H-elongata_contig7228.14900.1 vs. uniprot
Match: A0A6H5JPH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH3_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.000e-6
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  280 AGGLLLTSEDYTAHVMELRDELEEAWSKDEKVAALKVTVQ 399
            AGGLL+T E+Y AHV  L+++LE AWS++EKVAALKVTV+
Sbjct:  384 AGGLLVTPEEYVAHVSGLKEDLEVAWSREEKVAALKVTVK 423
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7228.14900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLV5_ECTSI3.350e-764.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPH3_9PHAE1.000e-667.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7228contigH-elongata_contig7228:1096..1948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size400
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931124.3048348-CDS-H-elongata_contig7228:1096..13961622931124.3048348-CDS-H-elongata_contig7228:1096..1396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7228 1097..1396 -
1691679708.0286279-CDS-H-elongata_contig7228:1096..13961691679708.0286279-CDS-H-elongata_contig7228:1096..1396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7228 1097..1396 -
1622931124.4867043-CDS-H-elongata_contig7228:1849..19481622931124.4867043-CDS-H-elongata_contig7228:1849..1948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7228 1850..1948 -
1691679708.0441027-CDS-H-elongata_contig7228:1849..19481691679708.0441027-CDS-H-elongata_contig7228:1849..1948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7228 1850..1948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7228.14900.1prot_H-elongata_contig7228.14900.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7228 1097..1948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7228.14900.1

>prot_H-elongata_contig7228.14900.1 ID=prot_H-elongata_contig7228.14900.1|Name=mRNA_H-elongata_contig7228.14900.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
KRWEKHLEGILKRWGPGASISGPHRGSNSGADQAAGPSKSPTVSKPPRSK
SRYETRLEELESSLSGASSGSSGGGGTGGGSGSKAKNVADVAMAGGLLLT
SEDYTAHVMELRDELEEAWSKDEKVAALKVTVQ
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mRNA from alignment at H-elongata_contig7228:1096..1948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7228.14900.1 ID=mRNA_H-elongata_contig7228.14900.1|Name=mRNA_H-elongata_contig7228.14900.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=853bp|location=Sequence derived from alignment at H-elongata_contig7228:1096..1948- (Himanthalia elongata Himel1 dioecious)
AAACGATGGGAGAAACATCTCGAAGGAATCTTGAAACGATGGGGGCCGGG
GGCTAGTATAAGCGGCCCTCATCGCGGAAGCAACAGCGGGGCTGATCAGG
TCGGTGTTTGTTTGTTTGTTATCTATCTATGTAAAAGTGTGTACACGGAA
GGTTTTAGACTGTGTCCCGTTGCCTTACATCCCACACGCGCTTTGCAGCC
TTGATGCCCCCCGCGCTTCTCTGATCTTGGGTAAGATATCGGTGTAGAAG
GCGGTGCAAGTGATGTAAAGAATATGCAGCCAACCATCAACGAAATTTTA
CTTTAGGTTTGTATACATTAGGATCTTGGGGATGGAGGGAGGGGGGGGGC
GTCACAGCGTCGTTTACAACGCGCATCACGAACTTCCTAAAATAGTCTCG
TCGGCCTTGTTTGTGACCCGTTTCATTGAAATTCCCTTCTACTTGTTGAT
TATTATTTCGTGTGCTATTTAGTACTGTTGGTGTTGGTGGTGGTATTGGT
CTCACTTACACACTCTGTAATCATTCCCCGTGAAATGTGTTGCACATTGC
AGGCCGCCGGACCCTCCAAAAGTCCCACCGTTTCAAAACCACCACGTTCC
AAGAGTCGGTACGAGACTCGTCTGGAGGAGCTGGAGAGTTCTCTCTCGGG
TGCGAGCAGCGGCAGCAGCGGCGGTGGTGGTACCGGTGGAGGCAGCGGAA
GCAAAGCGAAAAACGTTGCCGACGTGGCGATGGCCGGCGGTCTCCTATTG
ACGTCAGAGGACTACACGGCCCACGTTATGGAGCTGAGGGACGAACTTGA
GGAGGCGTGGTCCAAGGACGAGAAGGTCGCGGCGCTCAAGGTTACGGTTC
AGG
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Coding sequence (CDS) from alignment at H-elongata_contig7228:1096..1948-

>mRNA_H-elongata_contig7228.14900.1 ID=mRNA_H-elongata_contig7228.14900.1|Name=mRNA_H-elongata_contig7228.14900.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig7228:1096..1948- (Himanthalia elongata Himel1 dioecious)
AAACGATGGGAGAAACATCTCGAAGGAATCTTGAAACGATGGGGGCCGGG
GGCTAGTATAAGCGGCCCTCATCGCGGAAGCAACAGCGGGGCTGATCAGA
AACGATGGGAGAAACATCTCGAAGGAATCTTGAAACGATGGGGGCCGGGG
GCTAGTATAAGCGGCCCTCATCGCGGAAGCAACAGCGGGGCTGATCAGGC
CGCCGGACCCTCCAAAAGTCCCACCGTTTCAAAACCACCACGTTCCAAGA
GTCGGTACGAGACTCGTCTGGAGGAGCTGGAGAGTTCTCTCTCGGGTGCG
AGCAGCGGCAGCAGCGGCGGTGGTGGTACCGGTGGAGGCAGCGGAAGCAA
AGCGAAAAACGTTGCCGACGTGGCGATGGCCGGCGGTCTCCTATTGACGT
CAGAGGACTACACGGCCCACGTTATGGAGCTGAGGGACGAACTTGAGGAG
GCGTGGTCCAAGGACGAGAAGGTCGCGGCGCTCAAGGTTACGGTTCAGGC
CGCCGGACCCTCCAAAAGTCCCACCGTTTCAAAACCACCACGTTCCAAGA
GTCGGTACGAGACTCGTCTGGAGGAGCTGGAGAGTTCTCTCTCGGGTGCG
AGCAGCGGCAGCAGCGGCGGTGGTGGTACCGGTGGAGGCAGCGGAAGCAA
AGCGAAAAACGTTGCCGACGTGGCGATGGCCGGCGGTCTCCTATTGACGT
CAGAGGACTACACGGCCCACGTTATGGAGCTGAGGGACGAACTTGAGGAG
GCGTGGTCCAAGGACGAGAAGGTCGCGGCGCTCAAGGTTACGGTTCAG
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