mRNA_H-elongata_contig72189.14890.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72189.14890.1
Unique NamemRNA_H-elongata_contig72189.14890.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72189.14890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72189contigH-elongata_contig72189:138..830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size475
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72189.14890.1prot_H-elongata_contig72189.14890.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72189 210..830 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.9893568-UTR-H-elongata_contig72189:137..2091622931122.9893568-UTR-H-elongata_contig72189:137..209Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72189 138..209 +
1691679707.4126563-UTR-H-elongata_contig72189:137..2091691679707.4126563-UTR-H-elongata_contig72189:137..209Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72189 138..209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931123.003405-CDS-H-elongata_contig72189:209..4461622931123.003405-CDS-H-elongata_contig72189:209..446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72189 210..446 +
1691679707.4274125-CDS-H-elongata_contig72189:209..4461691679707.4274125-CDS-H-elongata_contig72189:209..446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72189 210..446 +
1622931123.0147393-CDS-H-elongata_contig72189:665..8301622931123.0147393-CDS-H-elongata_contig72189:665..830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72189 666..830 +
1691679707.4394963-CDS-H-elongata_contig72189:665..8301691679707.4394963-CDS-H-elongata_contig72189:665..830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72189 666..830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72189.14890.1

>prot_H-elongata_contig72189.14890.1 ID=prot_H-elongata_contig72189.14890.1|Name=mRNA_H-elongata_contig72189.14890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MRYGLAFATLTGSAFVESFNPSGGFFSGCARRVGRSSDTKIGLTRVHVDF
GGLHRHSTFQWSNQKEISPSLSFSSQRSRTPQQQQWDDAADNSRRRTELE
EVFISRRQLLGVVATMGAAVVLVGSNGVANAATE
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mRNA from alignment at H-elongata_contig72189:138..830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72189.14890.1 ID=mRNA_H-elongata_contig72189.14890.1|Name=mRNA_H-elongata_contig72189.14890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=693bp|location=Sequence derived from alignment at H-elongata_contig72189:138..830+ (Himanthalia elongata Himel1 dioecious)
AGACACGTCGGCGCTGCGGTGAACCAATTTCATAGACACAGAAAAGCTTG
ACATTCCAGCGGTTCTCACGGCATGCGATACGGCCTGGCCTTTGCGACCC
TGACTGGGTCAGCATTCGTAGAGTCGTTCAACCCAAGCGGAGGCTTCTTC
AGCGGTTGCGCTCGACGCGTAGGTCGTTCTAGTGATACGAAGATTGGGTT
GACACGAGTGCACGTAGACTTCGGCGGCCTTCACCGCCACAGCACATTCC
AATGGAGTAATCAAAAGGAAATTTCGCCATCTTTGTCGTTTTCTTCTCAA
CGAAGCAGAGCTCGCTGCACCGCTACTCGAAACACCAGCCATTCTAATGT
GGAGACACATCCCTCATCACCACAACGGTCAACAAGTATGTCTCCACGTT
CACGCTTGTCACAGCATCGAAATGCTAAAGCTGCAGCAGGTTCGAATCAT
GACAGAATCAGGGCGCGATCGGACAGCGGCAGGCCGGGCGTAGATATATG
TGTCCCTGCTGTAAGAAGACGTCGCAAGACACCGCAGCAGCAGCAGTGGG
ACGACGCGGCGGATAACTCACGAAGGCGGACTGAATTGGAGGAGGTTTTC
ATTAGCCGTCGGCAGCTCTTGGGCGTTGTTGCTACCATGGGAGCTGCGGT
TGTGCTGGTGGGGAGCAACGGCGTGGCCAATGCAGCGACTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig72189:138..830+

>mRNA_H-elongata_contig72189.14890.1 ID=mRNA_H-elongata_contig72189.14890.1|Name=mRNA_H-elongata_contig72189.14890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig72189:138..830+ (Himanthalia elongata Himel1 dioecious)
ATGCGATACGGCCTGGCCTTTGCGACCCTGACTGGGTCAGCATTCGTAGA
GTCGTTCAACCCAAGCGGAGGCTTCTTCAGCGGTTGCGCTCGACGCGTAG
GTCGTTCTAGTGATACGAAGATTGGGTTGACACGAGTGCACGTAGACTTC
GGCGGCCTTCACCGCCACAGCACATTCCAATGGAGTAATCAAAAGGAAAT
TTCGCCATCTTTGTCGTTTTCTTCTCAACGAAGCAGAATGCGATACGGCC
TGGCCTTTGCGACCCTGACTGGGTCAGCATTCGTAGAGTCGTTCAACCCA
AGCGGAGGCTTCTTCAGCGGTTGCGCTCGACGCGTAGGTCGTTCTAGTGA
TACGAAGATTGGGTTGACACGAGTGCACGTAGACTTCGGCGGCCTTCACC
GCCACAGCACATTCCAATGGAGTAATCAAAAGGAAATTTCGCCATCTTTG
TCGTTTTCTTCTCAACGAAGCAGAACACCGCAGCAGCAGCAGTGGGACGA
CGCGGCGGATAACTCACGAAGGCGGACTGAATTGGAGGAGGTTTTCATTA
GCCGTCGGCAGCTCTTGGGCGTTGTTGCTACCATGGGAGCTGCGGTTGTG
CTGGTGGGGAGCAACGGCGTGGCCAATGCAGCGACTGAGACACCGCAGCA
GCAGCAGTGGGACGACGCGGCGGATAACTCACGAAGGCGGACTGAATTGG
AGGAGGTTTTCATTAGCCGTCGGCAGCTCTTGGGCGTTGTTGCTACCATG
GGAGCTGCGGTTGTGCTGGTGGGGAGCAACGGCGTGGCCAATGCAGCGAC
TGAG
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