mRNA_H-elongata_contig72187.14889.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72187.14889.1
Unique NamemRNA_H-elongata_contig72187.14889.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72187.14889.1 vs. uniprot
Match: D7FKU7_ECTSI (Casein kinase II subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU7_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 7.600e-63
Identity = 90/107 (84.11%), Postives = 100/107 (93.46%), Query Frame = 1 
Query:    1 ARFLMSPQGLKVVLEKFSKAHYGRCPRQ--EGQAVLPVGETDRPRQSSVKVFCPRCGDLYFPSGYVRACDGAFWGTTLAHLVLLGWPELKTAPNPNHYVPRVFGFRL 315
            ARFL+SPQGLKVVLEKFSKA +GRCPR   +GQAVLPVGE+DRP+QSSVKVFCPRCGDLY+PSGYVRACDGAFWGTTL HL+LLGWPELKT PN +HYVPRVFGF++
Sbjct:  117 ARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKV 223
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BLAST of mRNA_H-elongata_contig72187.14889.1 vs. uniprot
Match: G0V1Y8_TRYCI (Casein kinase II subunit beta n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=G0V1Y8_TRYCI)

HSP 1 Score: 123 bits (308), Expect = 3.010e-32
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:    1 ARFLMSPQGLKVVLEKFSKAHYGRCPRQ--EGQAVLPVGETDRPRQSSVKVFCPRCGDLYFP-SGYVRACDGAFWGTTLAHLVLLGWPEL-KTAPNPNH-YVPRVFGFRL 315
            ARF+ +P+GLK++ EKF++A +GRCPR    GQAVLPVG++D  R+SSVK+FCP+C D+Y+P S   R  DGAFWGTT  HL L+   E  K  P P   YVPR++GFRL
Sbjct:  104 ARFITTPRGLKLMEEKFAEAEFGRCPRVFCGGQAVLPVGQSDVVRESSVKLFCPKCQDIYYPRSSRHRMLDGAFWGTTFPHLFLMHLRESGKLIPRPKQQYVPRIYGFRL 213
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BLAST of mRNA_H-elongata_contig72187.14889.1 vs. uniprot
Match: L1I5E1_GUITC (Casein kinase II subunit beta (Fragment) n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I5E1_GUITC)

HSP 1 Score: 119 bits (298), Expect = 4.340e-32
Identity = 55/108 (50.93%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:    1 ARFLMSPQGLKVVLEKFSKAHYGRCPRQ--EGQAVLPVGETDRPRQSSVKVFCPRCGDLYFP-SGYVRACDGAFWGTTLAHLVLLGWPELKTAPNPNHYVPRVFGFRL 315
            AR++ + +G++ +LEKF +  +GRCPR   +GQAVLPVG++D P Q +VKVFCP+C D+Y+P S    A DGA++GT+  HL+L  +PEL     P  YVPR++GFRL
Sbjct:   44 ARYIATQRGMQQMLEKFRRCDFGRCPRVLCDGQAVLPVGQSDIPHQLTVKVFCPKCQDMYYPKSSRKAATDGAYFGTSFPHLLLQTFPELFPPSRPEVYVPRIYGFRL 151
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BLAST of mRNA_H-elongata_contig72187.14889.1 vs. uniprot
Match: A0A6A5BNT9_NAEFO (Casein kinase II subunit beta n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BNT9_NAEFO)

HSP 1 Score: 120 bits (301), Expect = 1.070e-31
Identity = 53/106 (50.00%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 ARFLMSPQGLKVVLEKFSKAHYGRCPRQ--EGQAVLPVGETDRPRQSSVKVFCPRCGDLYFP-SGYVRACDGAFWGTTLAHLVLLGWPELKTAPNPNHYVPRVFGF 309
            ARF+++ +GL ++ EKF + H+GRCPR   +GQAVLPVG++D  R+SSVK++CPRC D+Y+P S   R  DGA+WGTT  HL L+ +  L   P    Y+P+++GF
Sbjct:   99 ARFILTNRGLALMEEKFRQVHFGRCPRVHCQGQAVLPVGQSDNIRESSVKIYCPRCNDIYYPRSSRHRGIDGAYWGTTFPHLFLIQYDNLIPKPPTEVYIPKIYGF 204
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BLAST of mRNA_H-elongata_contig72187.14889.1 vs. uniprot
Match: A0A2P6TZ54_CHLSO (Casein kinase II subunit beta n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TZ54_CHLSO)

HSP 1 Score: 120 bits (302), Expect = 2.350e-31
Identity = 55/108 (50.93%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:    1 ARFLMSPQGLKVVLEKFSKAHYGRCPRQ--EGQAVLPVGETDRPRQSSVKVFCPRCGDLYFP-SGYVRACDGAFWGTTLAHLVLLGWPELKTAPNPNHYVPRVFGFRL 315
            AR++++ +GL  + +KF    +GRCPR    GQA LPVG +D PRQS+VK+FCP+C D+Y+P S Y    DGA++GTT AHL  L +P+L+ A   +HYVP+VFGF++
Sbjct:  117 ARYILTSRGLSAMCDKFKNCDFGRCPRVYCNGQACLPVGLSDIPRQSTVKLFCPKCEDVYYPRSKYHGNLDGAYFGTTFAHLFQLTYPQLRPAKPTDHYVPKVFGFKI 224
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BLAST of mRNA_H-elongata_contig72187.14889.1 vs. uniprot
Match: UPI0004F44369 (putative dynein heavy chain n=1 Tax=Trypanosoma grayi TaxID=71804 RepID=UPI0004F44369)

HSP 1 Score: 120 bits (300), Expect = 2.960e-31
Identity = 60/110 (54.55%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:    1 ARFLMSPQGLKVVLEKFSKAHYGRCPRQ--EGQAVLPVGETDRPRQSSVKVFCPRCGDLYFP-SGYVRACDGAFWGTTLAHLVLLGWPEL-KTAPNPN-HYVPRVFGFRL 315
            ARF+ +P+GLK++ EKF +  +GRCPR    GQAVLPVG++D  R+SSVK+FCP+C D+Y+P S   R  DGAFWGTT  HL ++   E  K    P  HYVPR++GFRL
Sbjct:  104 ARFITTPRGLKLMEEKFVEGEFGRCPRVFCGGQAVLPVGQSDVVRESSVKLFCPKCQDIYYPRSSRHRTLDGAFWGTTFPHLFMMQLRENGKIVSKPRQHYVPRIYGFRL 213
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BLAST of mRNA_H-elongata_contig72187.14889.1 vs. uniprot
Match: M2W7H7_GALSU (Casein kinase II subunit beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W7H7_GALSU)

HSP 1 Score: 119 bits (297), Expect = 4.450e-31
Identity = 54/108 (50.00%), Postives = 76/108 (70.37%), Query Frame = 1 
Query:    1 ARFLMSPQGLKVVLEKFSKAHYGRCPRQ--EGQAVLPVGETDRPRQSSVKVFCPRCGDLYFPSGYVRAC-DGAFWGTTLAHLVLLGWPELKTAPNPNHYVPRVFGFRL 315
            ARF+++ +GL+++LEKF++A +GRCPR    GQ V+PVG +D PRQ++VKVFCPRC D++ P        DGA+WGTT AHL    +P+     N   Y+PR++GFRL
Sbjct:  113 ARFILTARGLQLMLEKFNRADFGRCPRVLCHGQPVVPVGLSDTPRQNTVKVFCPRCWDIFNPRSRSHCTLDGAYWGTTFAHLFFHTYPDRIPVRNKETYIPRIYGFRL 220
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BLAST of mRNA_H-elongata_contig72187.14889.1 vs. uniprot
Match: D2VQK6_NAEGR (Casein kinase II subunit beta n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VQK6_NAEGR)

HSP 1 Score: 118 bits (295), Expect = 7.690e-31
Identity = 51/108 (47.22%), Postives = 77/108 (71.30%), Query Frame = 1 
Query:    1 ARFLMSPQGLKVVLEKFSKAHYGRCPRQ--EGQAVLPVGETDRPRQSSVKVFCPRCGDLYFP-SGYVRACDGAFWGTTLAHLVLLGWPELKTAPNPNHYVPRVFGFRL 315
            ARF+++ +GL ++ EK+ + H+GRCPR   +GQ  LPVG++D+ R+SSVK++CPRC D+Y+P S   R  DGA+WGTT  HL L+ +  L   P    Y+P+V+GF++
Sbjct:   98 ARFILTNRGLALMEEKYRQVHFGRCPRVNCQGQPALPVGQSDKIRESSVKIYCPRCNDIYYPRSSRHRGIDGAYWGTTFPHLFLIQYDTLIPKPPTEVYIPKVYGFKV 205
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BLAST of mRNA_H-elongata_contig72187.14889.1 vs. uniprot
Match: A0A7S1T7G6_9RHOD (Casein kinase II subunit beta n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T7G6_9RHOD)

HSP 1 Score: 119 bits (298), Expect = 7.980e-31
Identity = 54/108 (50.00%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:    1 ARFLMSPQGLKVVLEKFSKAHYGRCPRQ--EGQAVLPVGETDRPRQSSVKVFCPRCGDLYFP-SGYVRACDGAFWGTTLAHLVLLGWPELKTAPNPNHYVPRVFGFRL 315
            AR++++ +G+  +L K++ A +GRCPR    GQAVLPVG  D+PR S+VK+FCP C D+Y+P S +    DGA+WGTT AHL L  +  L    NP  YVPR+FGF++
Sbjct:  158 ARYILTARGMHAMLAKYNDAAFGRCPRVYCAGQAVLPVGTADQPRLSTVKIFCPMCWDVYYPRSRHHDTLDGAYWGTTFAHLFLQQYSNLVPQRNPERYVPRIFGFKI 265
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BLAST of mRNA_H-elongata_contig72187.14889.1 vs. uniprot
Match: M1UT51_CYAM1 (Casein kinase II subunit beta n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1UT51_CYAM1)

HSP 1 Score: 119 bits (299), Expect = 1.370e-30
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    1 ARFLMSPQGLKVVLEKFSKAHYGRCPRQ--EGQAVLPVGETDRPRQSSVKVFCPRCGDLYFPSGYVRA-CDGAFWGTTLAHLVLLGWPELKTAPNPNHYVPRVFGFRL 315
            AR++++ +GL  +LEK++   +GRCPR    GQ VLPVG++D PR + VK+FCP+C D+Y P     +  DGAFWGTT  HL L  +PEL    NP  YVPR+FGFR+
Sbjct:  195 ARYILTNRGLHDMLEKYNNVDFGRCPRVFCNGQPVLPVGQSDLPRTAVVKLFCPKCWDIYVPRSAAHSHLDGAFWGTTFPHLFLQTYPELVPERNPCRYVPRIFGFRV 302
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72187.14889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKU7_ECTSI7.600e-6384.11Casein kinase II subunit beta n=2 Tax=Ectocarpus T... [more]
G0V1Y8_TRYCI3.010e-3256.36Casein kinase II subunit beta n=1 Tax=Trypanosoma ... [more]
L1I5E1_GUITC4.340e-3250.93Casein kinase II subunit beta (Fragment) n=2 Tax=G... [more]
A0A6A5BNT9_NAEFO1.070e-3150.00Casein kinase II subunit beta n=2 Tax=Naegleria Ta... [more]
A0A2P6TZ54_CHLSO2.350e-3150.93Casein kinase II subunit beta n=1 Tax=Chlorella so... [more]
UPI0004F443692.960e-3154.55putative dynein heavy chain n=1 Tax=Trypanosoma gr... [more]
M2W7H7_GALSU4.450e-3150.00Casein kinase II subunit beta n=1 Tax=Galdieria su... [more]
D2VQK6_NAEGR7.690e-3147.22Casein kinase II subunit beta n=1 Tax=Naegleria gr... [more]
A0A7S1T7G6_9RHOD7.980e-3150.00Casein kinase II subunit beta n=1 Tax=Compsopogon ... [more]
M1UT51_CYAM11.370e-3050.93Casein kinase II subunit beta n=1 Tax=Cyanidioschy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72187contigH-elongata_contig72187:184..984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue4e-47
Seed eggNOG ortholog2880.D7FKU7
KEGG koko:K03115
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
EggNOG free text desc.protein kinase regulator activity
EggNOG OGsCOG5041@1,KOG3092@2759
COG Functional cat.DKT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCasein kinase II, regulatory subunit
Ec32 orthologEc-17_001440.1
Exons3
Model size315
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72187.14889.1prot_H-elongata_contig72187.14889.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72187 196..984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.8941307-UTR-H-elongata_contig72187:183..1951622931122.8941307-UTR-H-elongata_contig72187:183..195Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72187 184..195 +
1691679707.3777647-UTR-H-elongata_contig72187:183..1951691679707.3777647-UTR-H-elongata_contig72187:183..195Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72187 184..195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.9108682-CDS-H-elongata_contig72187:195..2701622931122.9108682-CDS-H-elongata_contig72187:195..270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72187 196..270 +
1691679707.387294-CDS-H-elongata_contig72187:195..2701691679707.387294-CDS-H-elongata_contig72187:195..270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72187 196..270 +
1622931122.9300632-CDS-H-elongata_contig72187:505..5621622931122.9300632-CDS-H-elongata_contig72187:505..562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72187 506..562 +
1691679707.394864-CDS-H-elongata_contig72187:505..5621691679707.394864-CDS-H-elongata_contig72187:505..562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72187 506..562 +
1622931122.946681-CDS-H-elongata_contig72187:813..9841622931122.946681-CDS-H-elongata_contig72187:813..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72187 814..984 +
1691679707.4046855-CDS-H-elongata_contig72187:813..9841691679707.4046855-CDS-H-elongata_contig72187:813..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72187 814..984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72187.14889.1

>prot_H-elongata_contig72187.14889.1 ID=prot_H-elongata_contig72187.14889.1|Name=mRNA_H-elongata_contig72187.14889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MSPQGLKVVLEKFSKAHYGRCPRQEGQAVLPVGETDRPRQSSVKVFCPRC
GDLYFPSGYVRACDGAFWGTTLAHLVLLGWPELKTAPNPNHYVPRVFGFR
L
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mRNA from alignment at H-elongata_contig72187:184..984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72187.14889.1 ID=mRNA_H-elongata_contig72187.14889.1|Name=mRNA_H-elongata_contig72187.14889.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=801bp|location=Sequence derived from alignment at H-elongata_contig72187:184..984+ (Himanthalia elongata Himel1 dioecious)
GCTAGGTTCTTGATGAGCCCCCAGGGGTTGAAGGTTGTCCTGGAGAAGTT
TTCAAAGGCCCACTACGGAAGATGTCCAAGGCAAGAAGTATTAACCTTAG
CGCATCGCGTAAAAGCCTCGGCTAGTTATTCTCGGAAGGATCTCAATAAA
GGTCCATATATGATATATACTACTAGTATGTATATATACTGCTGATAACC
ACTGGTAGAATATATCGAAATTCTCCTCAACGTTACCAGCCAGCGCCTTC
GCTTGCTGGTTGCAACGAGTAACCTTAATACTAATTGTCCTCCTCATGTC
AAACACAAGAGTCTACTGTCAGGGACAAGCGGTGCTTCCAGTTGGAGAGA
CGGACCGGCCAAGGCAAAGCTCAGTCAAGGTGAGCGTTTGATCGATGCAT
ATACTTCTCCAACAAGGGCATGGCCGACATCCAAAGAATATTGGACATCA
TCGAGTTATCCTCGTGCCGGGAGGCCTGCGGTCTTGGTTGTGGAATACAA
GTGATACTGAAGGATTCGATGCCCCAGTGTCCTGCACCACGTGAGAGGTT
TGGCGTTTCCGACAGAGCTGCGACCGGAGTGAGCTCACATAGTTCTTCGA
TATACCTAACGGTACACCACGGCATACCAGGTATTCTGTCCGCGCTGTGG
GGACCTTTACTTCCCCTCGGGATACGTGCGGGCGTGTGACGGAGCATTCT
GGGGCACAACTCTGGCTCATCTTGTGCTACTGGGCTGGCCAGAGCTCAAG
ACTGCGCCCAACCCGAATCACTACGTGCCGAGGGTTTTCGGCTTTAGGTT
G
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Coding sequence (CDS) from alignment at H-elongata_contig72187:184..984+

>mRNA_H-elongata_contig72187.14889.1 ID=mRNA_H-elongata_contig72187.14889.1|Name=mRNA_H-elongata_contig72187.14889.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig72187:184..984+ (Himanthalia elongata Himel1 dioecious)
ATGAGCCCCCAGGGGTTGAAGGTTGTCCTGGAGAAGTTTTCAAAGGCCCA
CTACGGAAGATGTCCAAGGCAAGAAATGAGCCCCCAGGGGTTGAAGGTTG
TCCTGGAGAAGTTTTCAAAGGCCCACTACGGAAGATGTCCAAGGCAAGAA
GGACAAGCGGTGCTTCCAGTTGGAGAGACGGACCGGCCAAGGCAAAGCTC
AGTCAAGGGACAAGCGGTGCTTCCAGTTGGAGAGACGGACCGGCCAAGGC
AAAGCTCAGTCAAGGTATTCTGTCCGCGCTGTGGGGACCTTTACTTCCCC
TCGGGATACGTGCGGGCGTGTGACGGAGCATTCTGGGGCACAACTCTGGC
TCATCTTGTGCTACTGGGCTGGCCAGAGCTCAAGACTGCGCCCAACCCGA
ATCACTACGTGCCGAGGGTTTTCGGCTTTAGGTTGGTATTCTGTCCGCGC
TGTGGGGACCTTTACTTCCCCTCGGGATACGTGCGGGCGTGTGACGGAGC
ATTCTGGGGCACAACTCTGGCTCATCTTGTGCTACTGGGCTGGCCAGAGC
TCAAGACTGCGCCCAACCCGAATCACTACGTGCCGAGGGTTTTCGGCTTT
AGGTTG
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