mRNA_H-elongata_contig72172.14886.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72172.14886.1
Unique NamemRNA_H-elongata_contig72172.14886.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72172.14886.1 vs. uniprot
Match: D8LKN7_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.880e-14
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 MPGDGVPPRFESFNIWGDFAGPDAKLDEGSEMIFHSCASHLEHLVRARELRCPVGAC 171
            +P  G  PRFE+FN+WGDFAGPD+  D+ S M+F++C  H + L+R R+  CPV  C
Sbjct:  227 LPASGDAPRFETFNLWGDFAGPDSVFDDESGMVFYACRGHYDDLLRMRDPYCPVAGC 283
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BLAST of mRNA_H-elongata_contig72172.14886.1 vs. uniprot
Match: A0A6H5JGR2_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.900e-14
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 MPGDGVPPRFESFNIWGDFAGPDAKLDEGSEMIFHSCASHLEHLVRARELRCPVGAC 171
            +P     PRFE+FN+WGDFAGPD+  D+ S M+F++C  H + L+R R+L CPV  C
Sbjct:  224 LPASRDAPRFETFNLWGDFAGPDSVFDDESGMVFYACRGHYDDLLRMRDLYCPVTGC 280
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BLAST of mRNA_H-elongata_contig72172.14886.1 vs. uniprot
Match: M4BGM0_HYAAE (R3H domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BGM0_HYAAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.950e-9
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   28 FESFNIWGDFAGPDAKLDEGSEMIFHSCASHLEHLVRARELRCPVGAC 171
            FESF +WGD AGPD+ LDE SE+IF +C +H + L   RE +C +  C
Sbjct:   31 FESFELWGDVAGPDSVLDEKSEIIFVACRAHYKELCSLREFQCRIKRC 78
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BLAST of mRNA_H-elongata_contig72172.14886.1 vs. uniprot
Match: A0A662XHC5_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XHC5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.300e-9
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   16 VPPRFESFNIWGDFAGPDAKLDEGSEMIFHSCASHLEHLVRARELRCPVGAC 171
             P  FESF +WGD AGP++ LDE SEMIF +C +H   L   RE +C +  C
Sbjct:  210 APRAFESFELWGDAAGPESVLDEPSEMIFVNCRAHYHALRSLREFKCRMKRC 261
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BLAST of mRNA_H-elongata_contig72172.14886.1 vs. uniprot
Match: A0A662Y532_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y532_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.570e-9
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   16 VPPRFESFNIWGDFAGPDAKLDEGSEMIFHSCASHLEHLVRARELRCPVGAC 171
             P  FESF +WGD AGP++ LDE SEMIF +C +H   L   RE +C +  C
Sbjct:  210 APRAFESFELWGDAAGPESVLDEPSEMIFVNCRAHYHALRSLREFKCRMKRC 261
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BLAST of mRNA_H-elongata_contig72172.14886.1 vs. uniprot
Match: A0A5D6XSG8_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XSG8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.410e-8
Identity = 27/48 (56.25%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:   28 FESFNIWGDFAGPDAKLDEGSEMIFHSCASHLEHLVRARELRCPVGAC 171
            F+SF  WGD  GPDA LDE SEMIF  C +H E L   RE +C V  C
Sbjct:  211 FDSFPFWGDALGPDAVLDEPSEMIFVDCRAHYEALRALREFKCRVKKC 258
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BLAST of mRNA_H-elongata_contig72172.14886.1 vs. uniprot
Match: G4YVH3_PHYSP (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YVH3_PHYSP)

HSP 1 Score: 58.2 bits (139), Expect = 1.930e-8
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   16 VPPRFESFNIWGDFAGPDAKLDEGSEMIFHSCASHLEHLVRARELRCPVGAC 171
             P  FESF +WGD AGP++ LDE S+MIF  C +H   L   RE +C +  C
Sbjct:  153 APRPFESFELWGDAAGPESVLDEPSDMIFVDCRAHYSELRSLREFKCRMKRC 204
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BLAST of mRNA_H-elongata_contig72172.14886.1 vs. uniprot
Match: A0A3F2RJA0_9STRA (RING-type E3 ubiquitin transferase n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJA0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.750e-8
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   16 VPPRFESFNIWGDFAGPDAKLDEGSEMIFHSCASHLEHLVRARELRCPVGAC 171
             P  FESF +WGD AGP++ LDE SE+IF  C +H   L   RE +C +  C
Sbjct:   60 TPRTFESFELWGDAAGPESVLDELSEIIFVDCRAHYHALRSLREFKCRLKRC 111
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BLAST of mRNA_H-elongata_contig72172.14886.1 vs. uniprot
Match: A0A2P4XA62_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XA62_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.760e-8
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   19 PPRFESFNIWGDFAGPDAKLDEGSEMIFHSCASHLEHLVRARELRCPVGAC 171
            P  +ESF +WGD AGP++ LDE SEMIF  C +H   L   RE +C +  C
Sbjct:  138 PRPYESFELWGDAAGPESVLDEPSEMIFVDCRAHYYDLRSLREFKCRMKRC 188
[Close]
BLAST of mRNA_H-elongata_contig72172.14886.1 vs. uniprot
Match: W2PIK0_PHYPN (RING-type E3 ubiquitin transferase n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PIK0_PHYPN)

HSP 1 Score: 56.2 bits (134), Expect = 9.210e-8
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   28 FESFNIWGDFAGPDAKLDEGSEMIFHSCASHLEHLVRARELRCPVGAC 171
            +ESF +WGD AGP++ LDE SEMIF  C +H   L   RE +C +  C
Sbjct:  174 YESFELWGDAAGPESVLDEPSEMIFVDCKAHYYELRSLREFKCRMKRC 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72172.14886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LKN7_ECTSI3.880e-1450.88RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5JGR2_9PHAE9.900e-1450.88RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
M4BGM0_HYAAE2.950e-952.08R3H domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A662XHC5_9STRA7.300e-950.00RING-type E3 ubiquitin transferase n=1 Tax=Nothoph... [more]
A0A662Y532_9STRA7.570e-950.00RING-type E3 ubiquitin transferase n=1 Tax=Nothoph... [more]
A0A5D6XSG8_9STRA1.410e-856.25RING-type E3 ubiquitin transferase n=1 Tax=Pythium... [more]
G4YVH3_PHYSP1.930e-848.08RING-type E3 ubiquitin transferase n=1 Tax=Phytoph... [more]
A0A3F2RJA0_9STRA6.750e-848.08RING-type E3 ubiquitin transferase n=4 Tax=Phytoph... [more]
A0A2P4XA62_9STRA6.760e-849.02RING-type E3 ubiquitin transferase n=2 Tax=Phytoph... [more]
W2PIK0_PHYPN9.210e-850.00RING-type E3 ubiquitin transferase n=9 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72172contigH-elongata_contig72172:495..665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog2880.D8LKN7
Preferred nameZNF598
KEGG koko:K22381
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006325,GO:0006412,GO:0006414,GO:0006417,GO:0006464,GO:0006513,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0030163,GO:0031323,GO:0031326,GO:0032268,GO:0032446,GO:0034248,GO:0034641,GO:0034645,GO:0036205,GO:0036211,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0051276,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:2000112,GO:2000765
EggNOG free text desc.rescue of stalled ribosome
EggNOG OGsCOG5236@1,KOG2231@2759
EC2.3.2.27
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.495074-CDS-H-elongata_contig72172:494..6651622931122.495074-CDS-H-elongata_contig72172:494..665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72172 495..665 +
1691679707.317206-CDS-H-elongata_contig72172:494..6651691679707.317206-CDS-H-elongata_contig72172:494..665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72172 495..665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72172.14886.1prot_H-elongata_contig72172.14886.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72172 495..665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72172.14886.1

>prot_H-elongata_contig72172.14886.1 ID=prot_H-elongata_contig72172.14886.1|Name=mRNA_H-elongata_contig72172.14886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MPGDGVPPRFESFNIWGDFAGPDAKLDEGSEMIFHSCASHLEHLVRAREL
RCPVGAC
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mRNA from alignment at H-elongata_contig72172:495..665+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72172.14886.1 ID=mRNA_H-elongata_contig72172.14886.1|Name=mRNA_H-elongata_contig72172.14886.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig72172:495..665+ (Himanthalia elongata Himel1 dioecious)
ATGCCGGGAGACGGAGTACCTCCCCGCTTCGAGTCCTTCAACATATGGGG
AGATTTCGCCGGACCCGACGCGAAGCTCGACGAGGGAAGCGAAATGATTT
TTCACTCGTGCGCGTCTCACCTTGAGCACCTGGTGCGAGCGAGAGAACTT
CGCTGTCCGGTAGGCGCCTGC
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Coding sequence (CDS) from alignment at H-elongata_contig72172:495..665+

>mRNA_H-elongata_contig72172.14886.1 ID=mRNA_H-elongata_contig72172.14886.1|Name=mRNA_H-elongata_contig72172.14886.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig72172:495..665+ (Himanthalia elongata Himel1 dioecious)
ATGCCGGGAGACGGAGTACCTCCCCGCTTCGAGTCCTTCAACATATGGGG
AGATTTCGCCGGACCCGACGCGAAGCTCGACGAGGGAAGCGAAATGATTT
TTCACTCGTGCGCGTCTCACCTTGAGCACCTGGTGCGAGCGAGAGAACTT
CGCTGTCCGGTAGGCGCCTGCATGCCGGGAGACGGAGTACCTCCCCGCTT
CGAGTCCTTCAACATATGGGGAGATTTCGCCGGACCCGACGCGAAGCTCG
ACGAGGGAAGCGAAATGATTTTTCACTCGTGCGCGTCTCACCTTGAGCAC
CTGGTGCGAGCGAGAGAACTTCGCTGTCCGGTAGGCGCCTGC
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