mRNA_H-elongata_contig71996.14876.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71996.14876.1
Unique NamemRNA_H-elongata_contig71996.14876.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71996.14876.1 vs. uniprot
Match: A0A482UR88_9ARCH (FYVE-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UR88_9ARCH)

HSP 1 Score: 104 bits (259), Expect = 3.990e-27
Identity = 45/87 (51.72%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:   13 TGGAPKWVPDDQAKGCMLCGSRRVLPAREYSLVLFTIVLRRHHCRRCGRVACAFCAPTNNTRPILEWSLPHAVRHCHLCYRSPLLDW 273
             GG   W+ D  A  CM C  R            F+ +LRRHHCRRCG+V C  CAP+NN+RPILEW L  AVRHC  C++SPL+DW
Sbjct:   34 AGGGASWILDSDAPQCMRCSRR------------FSFLLRRHHCRRCGQVVCEACAPSNNSRPILEWGLREAVRHCRGCFKSPLIDW 108
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BLAST of mRNA_H-elongata_contig71996.14876.1 vs. uniprot
Match: A9UQ85_MONBE (FYVE-type domain-containing protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UQ85_MONBE)

HSP 1 Score: 77.4 bits (189), Expect = 6.040e-17
Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   22 APKWVPDDQAKGCMLCGSRRVLPAREYSLVLFTIVLRRHHCRRCGRVACAFCAPTNNTRPILEWSLPHAVRHC 240
            A  W PDD  K C LC ++            FT+V RRHHCRRCG++ C+ CAP NNT+PI E S+   VRHC
Sbjct:    4 AAPWTPDDHGK-CQLCANK------------FTMVRRRHHCRRCGKLVCSSCAPKNNTKPIPELSMLEPVRHC 63
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BLAST of mRNA_H-elongata_contig71996.14876.1 vs. uniprot
Match: D8LE09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE09_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.060e-15
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   19 GAPKWVPDDQAKGCMLCGSRRVLPAREYSLVLFTIVLRRHHCRRCGRVACAFCAPTNNTRPILE 210
            G P+WV D++ + CMLC              +FT++LRRHHCRRCGR++C FCAPT N+RPILE
Sbjct:  567 GPPRWVADEEQEACMLCDR------------VFTVILRRHHCRRCGRLSCKFCAPTENSRPILE 618
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BLAST of mRNA_H-elongata_contig71996.14876.1 vs. uniprot
Match: A0A3P7GJ14_TOXCA (FYVE-type domain-containing protein n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A3P7GJ14_TOXCA)

HSP 1 Score: 60.5 bits (145), Expect = 9.750e-10
Identity = 30/75 (40.00%), Postives = 40/75 (53.33%), Query Frame = 1 
Query:   25 PKWVPDDQAKGCMLCGSRRVLPAREYSLVLFTIVLRRHHCRRCGRVACAFCAPTNNTRPILEWSLPHAVRHCHLC 249
            PKW   D    C  CG++            FT+ +R+HHCR CGR+ CA C+    T PIL++ L  AVR C +C
Sbjct:   55 PKWAEGDV---CSECGAK------------FTLTMRKHHCRHCGRLVCARCS--EQTMPILKYDLQKAVRVCQIC 112
[Close]
BLAST of mRNA_H-elongata_contig71996.14876.1 vs. uniprot
Match: A0A0P1B090_PLAHL (Early endosome antigen 1-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B090_PLAHL)

HSP 1 Score: 61.6 bits (148), Expect = 4.540e-9
Identity = 31/87 (35.63%), Postives = 44/87 (50.57%), Query Frame = 1 
Query:   28 KWVPDDQAKGCMLCGSRRVLPAREYSLVLFTIVLRRHHCRRCGRVACAFCAPTNNTRPILEWSLPHAVRHCHLCYRS-----PLLDW 273
            +WV DD+   CMLC +            LFT++ R+HHCRRCG V C  C+P       +  + P  +R C+ CY +      LL+W
Sbjct:   35 QWVYDDETSNCMLCNT------------LFTMITRKHHCRRCGNVICHNCSPHKRR---ISSTDPFPMRVCNTCYAAVDEHFALLEW 106
[Close]
BLAST of mRNA_H-elongata_contig71996.14876.1 vs. uniprot
Match: A0A6P8XNM2_DROAB (LOW QUALITY PROTEIN: rabankyrin-5-like n=1 Tax=Drosophila albomicans TaxID=7291 RepID=A0A6P8XNM2_DROAB)

HSP 1 Score: 61.6 bits (148), Expect = 4.670e-9
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:   25 PKWVPDDQAKGCMLCGSRRVLPAREYSLVLFTIVLRRHHCRRCGRVACAFCAPTNNTRPILEWSLPHAVRHCHLCY 252
            PK  P  +++ C  CGS+            F++ +R+HHCR CGRV C+ C+  NN  PIL++ +   VR CH+C+
Sbjct: 1066 PKESPWSESELCQECGSK------------FSLTMRKHHCRHCGRVLCSKCS--NNDVPILKFGINKPVRVCHICF 1127
[Close]
BLAST of mRNA_H-elongata_contig71996.14876.1 vs. uniprot
Match: A0A7S1Q537_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1Q537_NEODS)

HSP 1 Score: 60.8 bits (146), Expect = 8.040e-9
Identity = 33/82 (40.24%), Postives = 42/82 (51.22%), Query Frame = 1 
Query:    7 GGTGGAPK-WVPDDQAKGCMLCGSRRVLPAREYSLVLFTIVLRRHHCRRCGRVACAFCAPTNNTRPILEWSLPHAVRHCHLC 249
            G T G P  WVPD Q+  C +CG+             FT+VLRRHHCRRCG + C  C+    T P  +  +   VR C +C
Sbjct:    2 GQTQGVPAYWVPDSQSTSCSVCGAD------------FTVVLRRHHCRRCGELCCRQCSKARATVP--DRGIVKRVRVCTMC 69
[Close]
BLAST of mRNA_H-elongata_contig71996.14876.1 vs. uniprot
Match: B4K9F2_DROMO (FYVE-type domain-containing protein n=4 Tax=mojavensis species complex TaxID=198037 RepID=B4K9F2_DROMO)

HSP 1 Score: 60.8 bits (146), Expect = 8.870e-9
Identity = 32/81 (39.51%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:   28 KWVPDDQAKGCMLCGSRRVLPAREYSLVLFTIVLRRHHCRRCGRVACAFCAPTNNTRPILEWSLPHAVRHCHLCYRSPLLD 270
            +W+PD+ A  CM C  RR           FT+++RRHHCRRCGRV C  C+    T P L   +   VR C+ CY+  + +
Sbjct: 1458 EWIPDESATHCMCC--RRSA---------FTMLMRRHHCRRCGRVVCYACSTQRMTIPELYGDVE--VRVCNDCYKPVIAE 1525
[Close]
BLAST of mRNA_H-elongata_contig71996.14876.1 vs. uniprot
Match: A0A7S4KGL3_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KGL3_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 1.140e-8
Identity = 33/84 (39.29%), Postives = 41/84 (48.81%), Query Frame = 1 
Query:   28 KWVPDDQAKGCMLCGSRRVLPAREYSLVLFTIVLRRHHCRRCGRVACAFCAPTNNTRP---ILEWSLPHAVRHCHLCYRSPLLD 270
            +W+ DD    C  C +             F++V+RRHHCR CGR+ CA C P N   P   IL  + P  VR C LCY    LD
Sbjct:  110 EWLDDDAHSHCFHCNNP------------FSVVVRRHHCRLCGRIFCADCCPPNKDVPFPAILNHNFP--VRACCLCYNMESLD 179
[Close]
BLAST of mRNA_H-elongata_contig71996.14876.1 vs. uniprot
Match: A0A6G0WE25_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WE25_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.150e-8
Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:   28 KWVPDDQAKGCMLCGSRRVLPAREYSLVLFTIVLRRHHCRRCGRVACAFCAPTNNTRPILEWSLPHAVRHCHLCYRS 258
            KWVPD +   CM C +            +FT++ R+HHCRRCG + CA C+P  N R +     P  VR C+ CY +
Sbjct:   17 KWVPDKETDKCMNCNA------------MFTVINRKHHCRRCGHIVCANCSP--NIRRMSPQD-PFPVRVCNPCYTA 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71996.14876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482UR88_9ARCH3.990e-2751.72FYVE-type domain-containing protein n=1 Tax=archae... [more]
A9UQ85_MONBE6.040e-1749.32FYVE-type domain-containing protein (Fragment) n=1... [more]
D8LE09_ECTSI1.060e-1553.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3P7GJ14_TOXCA9.750e-1040.00FYVE-type domain-containing protein n=1 Tax=Toxoca... [more]
A0A0P1B090_PLAHL4.540e-935.63Early endosome antigen 1-like n=1 Tax=Plasmopara h... [more]
A0A6P8XNM2_DROAB4.670e-938.16LOW QUALITY PROTEIN: rabankyrin-5-like n=1 Tax=Dro... [more]
A0A7S1Q537_NEODS8.040e-940.24Hypothetical protein (Fragment) n=1 Tax=Neobodo de... [more]
B4K9F2_DROMO8.870e-939.51FYVE-type domain-containing protein n=4 Tax=mojave... [more]
A0A7S4KGL3_9EUKA1.140e-839.29Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A6G0WE25_9STRA1.150e-838.96Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71996contigH-elongata_contig71996:1104..2421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue4.5e-13
Seed eggNOG ortholog2880.D8LE09
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0704@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size273
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71996.14876.1prot_H-elongata_contig71996.14876.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71996 1104..2421 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931121.2199984-CDS-H-elongata_contig71996:1103..11661622931121.2199984-CDS-H-elongata_contig71996:1103..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71996 1104..1166 -
1691679706.9512029-CDS-H-elongata_contig71996:1103..11661691679706.9512029-CDS-H-elongata_contig71996:1103..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71996 1104..1166 -
1622931121.2483976-CDS-H-elongata_contig71996:1599..16961622931121.2483976-CDS-H-elongata_contig71996:1599..1696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71996 1600..1696 -
1691679706.9648962-CDS-H-elongata_contig71996:1599..16961691679706.9648962-CDS-H-elongata_contig71996:1599..1696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71996 1600..1696 -
1622931121.2615929-CDS-H-elongata_contig71996:2308..24211622931121.2615929-CDS-H-elongata_contig71996:2308..2421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71996 2309..2421 -
1691679706.9748802-CDS-H-elongata_contig71996:2308..24211691679706.9748802-CDS-H-elongata_contig71996:2308..2421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71996 2309..2421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71996.14876.1

>prot_H-elongata_contig71996.14876.1 ID=prot_H-elongata_contig71996.14876.1|Name=mRNA_H-elongata_contig71996.14876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
GRGGTGGAPKWVPDDQAKGCMLCGSRRVLPAREYSLVLFTIVLRRHHCRR
CGRVACAFCAPTNNTRPILEWSLPHAVRHCHLCYRSPLLDW
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mRNA from alignment at H-elongata_contig71996:1104..2421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71996.14876.1 ID=mRNA_H-elongata_contig71996.14876.1|Name=mRNA_H-elongata_contig71996.14876.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1318bp|location=Sequence derived from alignment at H-elongata_contig71996:1104..2421- (Himanthalia elongata Himel1 dioecious)
GGGAGGGGGGGGACGGGTGGCGCCCCAAAATGGGTGCCGGACGACCAGGC
GAAGGGCTGCATGCTATGCGGCAGCAGGCGAGTTTTGCCCGCGCGCGAAT
ACTCCTTGGTGCTGTCTTGTTTTTTTTTTGTGTGGTCGAGGGGAGCCTTG
GACGTTAGCGGGGGGAGAAATAGTCTGGTCCCTTCCCGCTCACCTAGGTG
TGTTGTTCTGCTTTGTTTGTGTTTGATAACGATTGTCCTCCCCCCCTTCG
GTGGGTAAAAACGCCTATCCAATAATAGGATGCAACGAGCGAAGTAGTCC
CGAGTGAAGGAAGAAAATTCCGTTTCGTCTTTTTTGGAAGGGGCGCTATT
TTTTGTTTTTGTTTTCCGGCTTGAGCGTGGCGTGCGGCATATATGAGGGA
GAGAGCGAGGTAGAAAAAGAGATGTCGCCACCGATTGAACACGGACCGCT
TGGGCTGCCGTGATACTGCATCGACATCGATGGGGCAGACGCGTAGCGCC
TTCGCGCTTGAAAATTATAGCCGCGTTGTTTTCTCCCTTCATCTCGACGT
CGATATGATGTAAATATGATCTAAATAATATTTCATTATTGTATAATCTC
TCTCCCCCCCTCCCCTCCCATTTCCCCAACAAAAACGCCTCTTTTTCGGT
TTATCATGTATTGTTTTTCGTGTTTCTCGGTGGTTCGGACTGTGCTGTGC
TGTGGTGCATCCCGGGCAACATCAGGTTCACGATAGTGCTTCGCCGTCAC
CACTGTCGACGCTGCGGTCGAGTGGCTTGCGCGTTCTGCGCCCCGACGAA
TAACACACGACCCATCCTCGAGGTGAGGGAGTTGGAGAAAAGGTTGGCGT
GTGATAATGGGTGGTCCGATATGAGATGGGATGATGGTGGGGGGGTTCTG
AGGCGATTTCAGTTTTGTGCAGAGATCTTGAGAGACTCGAGCCAACAATA
ACACTGTATATTATAAATTATAACCACTAGAGTTGAACGTACCTTTGACT
TAGTAATATTCATAGAAATTTCTCGATGAAGGGGTGAAAATCTTCCAGGG
TTTTCTGAAGGTCGCGTGTCGTGGGATCGAGTAACTCGGGAAAGGGGGAA
TCTTGTAAGTTTTATATTTTTAAGTTTTCCTCCGCCGTCTGATATTTGAC
GCTCGACCGTTCTTATGTTGCCCCATTTCCCCTCCCCTAACTCCCCGCGT
TCTCTTGTCGAAACCCTCGGGGGTACCTATTGGTCGGGTTTTTTTAATCT
TGCAGTGGAGCTTACCGCACGCGGTAAGGCACTGCCATCTCTGCTACCGA
TCACCGCTGCTAGACTGG
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Coding sequence (CDS) from alignment at H-elongata_contig71996:1104..2421-

>mRNA_H-elongata_contig71996.14876.1 ID=mRNA_H-elongata_contig71996.14876.1|Name=mRNA_H-elongata_contig71996.14876.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig71996:1104..2421- (Himanthalia elongata Himel1 dioecious)
GGGAGGGGGGGGACGGGTGGCGCCCCAAAATGGGTGCCGGACGACCAGGC
GAAGGGCTGCATGCTATGCGGCAGCAGGCGAGTTTTGCCCGCGCGCGAAT
ACTCCTTGGTGCTGGGAGGGGGGGGACGGGTGGCGCCCCAAAATGGGTGC
CGGACGACCAGGCGAAGGGCTGCATGCTATGCGGCAGCAGGCGAGTTTTG
CCCGCGCGCGAATACTCCTTGGTGCTGTTCACGATAGTGCTTCGCCGTCA
CCACTGTCGACGCTGCGGTCGAGTGGCTTGCGCGTTCTGCGCCCCGACGA
ATAACACACGACCCATCCTCGAGGTTCACGATAGTGCTTCGCCGTCACCA
CTGTCGACGCTGCGGTCGAGTGGCTTGCGCGTTCTGCGCCCCGACGAATA
ACACACGACCCATCCTCGAGTGGAGCTTACCGCACGCGGTAAGGCACTGC
CATCTCTGCTACCGATCACCGCTGCTAGACTGGTGGAGCTTACCGCACGC
GGTAAGGCACTGCCATCTCTGCTACCGATCACCGCTGCTAGACTGG
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