mRNA_H-elongata_contig71889.14866.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71889.14866.1
Unique NamemRNA_H-elongata_contig71889.14866.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig71889.14866.1 vs. uniprot
Match: D7FSE0_ECTSI (Proteasome endopeptidase complex n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSE0_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 4.030e-78
Identity = 115/125 (92.00%), Postives = 122/125 (97.60%), Query Frame = 1 
Query:    4 GGFGFENHHRNKRIAEELARSGKQGSMPRAKLTGTTICGCVFKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQSRVITACTMLKRMLFRYQ 378
            GGF FENHHRN RIA ELA+SGK+G++PRAKLTGTTICGC++KGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQSRV+TACTMLKRMLFRYQ
Sbjct:   33 GGFDFENHHRNARIAAELAKSGKEGTLPRAKLTGTTICGCIYKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQSRVVTACTMLKRMLFRYQ 157
[Close]
BLAST of mRNA_H-elongata_contig71889.14866.1 vs. uniprot
Match: A0A835ZKI2_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI2_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.790e-71
Identity = 107/126 (84.92%), Postives = 114/126 (90.48%), Query Frame = 1 
Query:    1 TGGFGFENHHRNKRIAEELARSGKQGSMPRAKLTGTTICGCVFKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQSRVITACTMLKRMLFRYQ 378
             GGF FEN HRN RI E LA+ G +G +PRAKLTGTTICGCV+K G+VLGADTRATGGTEV DKNCEKIHYLAPNIYCCGAGTAADTEKTTE+IS QLDLLRLSTGTQSRV+TACTMLKRMLFRYQ
Sbjct:   24 AGGFNFENCHRNARIVESLAKEGVKGGLPRAKLTGTTICGCVYKDGIVLGADTRATGGTEVCDKNCEKIHYLAPNIYCCGAGTAADTEKTTELISSQLDLLRLSTGTQSRVVTACTMLKRMLFRYQ 149
[Close]
BLAST of mRNA_H-elongata_contig71889.14866.1 vs. uniprot
Match: A0A7S3VGC6_9STRA (Proteasome subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGC6_9STRA)

HSP 1 Score: 185 bits (469), Expect = 5.910e-56
Identity = 94/133 (70.68%), Postives = 111/133 (83.46%), Query Frame = 1 
Query:    1 TGGFGFENHHRNKRIAEELARS------GKQGSMPRAKLTGTTICGCVFKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTG-TQSRVITACTMLKRMLFRYQ 378
            +GGF F+N HRN  I E++A+S      G  G +P+A  TGTTI G  +KGGVVLGADTRATGGTEV DKNCEKIHYLAPNIYCCGAGTAADTEKTTE+IS QL+LLR++TG +QSRV+T+CTMLKRML++YQ
Sbjct:   17 SGGFSFDNIHRNAMI-EQMAKSNANVSNGPAGYLPKATKTGTTIVGLCYKGGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTELISSQLELLRMNTGGSQSRVVTSCTMLKRMLYKYQ 148
[Close]
BLAST of mRNA_H-elongata_contig71889.14866.1 vs. uniprot
Match: W7TKR2_9STRA (Proteasome subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKR2_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.470e-55
Identity = 93/124 (75.00%), Postives = 99/124 (79.84%), Query Frame = 1 
Query:    7 GFGFENHHRNKRIAEELARSGKQGSMPRAKLTGTTICGCVFKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQSRVITACTMLKRMLFRYQ 378
            GF F+N+ RN  +  E         +P A  TGTTI G  FK GVVLGADTRATGGTEV DKNCEKIHYLAPNIYCCGAGTAADTEKTTEMIS QLDLLRLSTG+ SRV+TACTMLKRMLFRYQ
Sbjct:   20 GFNFDNYARNASLPTETTMH-----LPSAMKTGTTIAGVTFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQ 138
[Close]
BLAST of mRNA_H-elongata_contig71889.14866.1 vs. uniprot
Match: A0A7S4ECT6_9STRA (Proteasome subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECT6_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.380e-54
Identity = 92/126 (73.02%), Postives = 101/126 (80.16%), Query Frame = 1 
Query:    1 TGGFGFENHHRNKRIAEELARSGKQGSMPRAKLTGTTICGCVFKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQSRVITACTMLKRMLFRYQ 378
            TGGF F    RN R+A   A +G   SMP    TGTTICG V+ GGVVLGADTRATGG+EV DKNCEKIHYLAPNIYCCGAGTAADTEKTTE+I+ QL+LLRL TGTQSRV+ A T+LKR LFRYQ
Sbjct:   21 TGGFDFGLAARNARLA---AAAGATASMPEPMSTGTTICGVVYAGGVVLGADTRATGGSEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTELIASQLELLRLGTGTQSRVVAATTLLKRTLFRYQ 143
[Close]
BLAST of mRNA_H-elongata_contig71889.14866.1 vs. uniprot
Match: A0A812UR08_SYMMI (PBB2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UR08_SYMMI)

HSP 1 Score: 176 bits (445), Expect = 2.890e-54
Identity = 88/125 (70.40%), Postives = 102/125 (81.60%), Query Frame = 1 
Query:    4 GGFGFENHHRNKRIAEELARSGKQGSMPRAKLTGTTICGCVFKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQSRVITACTMLKRMLFRYQ 378
            GGF F+   RN    E L  S     +P+A  TGTTICG V+K G+VLGADTRATGG+EV+DKNCEKIHYLAPNI+CCGAGTAADTEKTTE+I+  L+LLRLSTGTQSRV+T+ TMLKRML+RYQ
Sbjct:   21 GGFSFDLCKRN----EMLMSSSNSSVLPKAWKTGTTICGIVYKDGIVLGADTRATGGSEVMDKNCEKIHYLAPNIWCCGAGTAADTEKTTELIASNLELLRLSTGTQSRVVTSLTMLKRMLYRYQ 141
[Close]
BLAST of mRNA_H-elongata_contig71889.14866.1 vs. uniprot
Match: F0YIE7_AURAN (Proteasome subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIE7_AURAN)

HSP 1 Score: 176 bits (446), Expect = 9.470e-53
Identity = 90/126 (71.43%), Postives = 103/126 (81.75%), Query Frame = 1 
Query:    1 TGGFGFENHHRNKRIAEELARSGKQGSMPRAKLTGTTICGCVFKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQSRVITACTMLKRMLFRYQ 378
            TGGF F    RN++IA   A  G+   MP+   TGTTICG V+ GG+VLGADTRAT G+EV DKNCEKIHYLAPNIYCCGAGTAADTEKTTE+I+ QL+LLRLSTGTQSRV+ A T+LKRMLF+YQ
Sbjct:   16 TGGFDFGMTARNEQIA--AAAGGRP--MPQPMSTGTTICGMVYDGGIVLGADTRATAGSEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTELIASQLELLRLSTGTQSRVVAAVTLLKRMLFKYQ 137
[Close]
BLAST of mRNA_H-elongata_contig71889.14866.1 vs. uniprot
Match: A0A6S9FRF2_HETAK (Proteasome subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FRF2_HETAK)

HSP 1 Score: 175 bits (443), Expect = 4.790e-52
Identity = 90/126 (71.43%), Postives = 102/126 (80.95%), Query Frame = 1 
Query:    4 GGFGFENHHRNKRIAEELARSGKQGSMP-RAKLTGTTICGCVFKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQSRVITACTMLKRMLFRYQ 378
            GGF FEN  RN  I    ++ G   ++P  AK TGTTI G ++K GVVLGADTRATGGTEV DKNCEKIHYLAPNIYCCGAGTAADTEKTTE+IS QL+LLR++TG+QSR+ TA TML RMLFRYQ
Sbjct:   27 GGFNFENTSRNAFIQASASKDGN--TIPLSAKKTGTTIVGVIYKDGVVLGADTRATGGTEVCDKNCEKIHYLAPNIYCCGAGTAADTEKTTELISSQLELLRMNTGSQSRIATASTMLHRMLFRYQ 150
[Close]
BLAST of mRNA_H-elongata_contig71889.14866.1 vs. uniprot
Match: A0A7S2CLY8_9STRA (Proteasome subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CLY8_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.250e-51
Identity = 88/125 (70.40%), Postives = 102/125 (81.60%), Query Frame = 1 
Query:    4 GGFGFENHHRNKRIAEELARSGKQGSMPRAKLTGTTICGCVFKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQSRVITACTMLKRMLFRYQ 378
            GGF F+   R+++I   +A  G  G +P+A  TGTTI G ++K GVVLGADTRATGGTEV DKNCEKIHYL+ NIYCCGAGTAADTEKTTEMIS QL+L RL+TG QSRV+TA T+LKRMLFRYQ
Sbjct:   23 GGFAFDLCSRDQQIGTSIAAGG--GRLPQAMKTGTTIVGVIYKDGVVLGADTRATGGTEVCDKNCEKIHYLSDNIYCCGAGTAADTEKTTEMISSQLELHRLNTGMQSRVVTAVTLLKRMLFRYQ 145
[Close]
BLAST of mRNA_H-elongata_contig71889.14866.1 vs. uniprot
Match: A0A7S1DCE2_CYCTE (Proteasome subunit beta n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCE2_CYCTE)

HSP 1 Score: 174 bits (441), Expect = 1.290e-51
Identity = 86/124 (69.35%), Postives = 101/124 (81.45%), Query Frame = 1 
Query:    7 GFGFENHHRNKRIAEELARSGKQGSMPRAKLTGTTICGCVFKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQSRVITACTMLKRMLFRYQ 378
            GF F++ HRNK IA+    SG   ++P A  TGTTI G V+K GVVLGADTRAT G EV +KNCEKIH++APNIYCCGAGTAADTEKTTE+IS QL+LLR+ T + SRV+TACT+LKRMLFRYQ
Sbjct:   41 GFSFDHFHRNKVIADAAKSSGA--ALPSATKTGTTIVGLVYKDGVVLGADTRATSGAEVAEKNCEKIHFIAPNIYCCGAGTAADTEKTTELISSQLELLRMDTRSPSRVVTACTLLKRMLFRYQ 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71889.14866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSE0_ECTSI4.030e-7892.00Proteasome endopeptidase complex n=2 Tax=Ectocarpu... [more]
A0A835ZKI2_9STRA2.790e-7184.92Proteasome endopeptidase complex n=1 Tax=Tribonema... [more]
A0A7S3VGC6_9STRA5.910e-5670.68Proteasome subunit beta n=1 Tax=Chaetoceros debili... [more]
W7TKR2_9STRA2.470e-5575.00Proteasome subunit beta n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S4ECT6_9STRA2.380e-5473.02Proteasome subunit beta n=1 Tax=Pelagomonas calceo... [more]
A0A812UR08_SYMMI2.890e-5470.40PBB2 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
F0YIE7_AURAN9.470e-5371.43Proteasome subunit beta n=1 Tax=Aureococcus anopha... [more]
A0A6S9FRF2_HETAK4.790e-5271.43Proteasome subunit beta n=1 Tax=Heterosigma akashi... [more]
A0A7S2CLY8_9STRA1.250e-5170.40Proteasome subunit beta n=1 Tax=Florenciella parvu... [more]
A0A7S1DCE2_CYCTE1.290e-5169.35Proteasome subunit beta n=1 Tax=Cyclophora tenuis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71889contigH-elongata_contig71889:427..1654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue1.6e-61
Seed eggNOG ortholog2880.D7FSE0
Preferred namePSMB7
KEGG rclassRC00797
KEGG koko:K02733,ko:K02739,ko:K15402,ko:K18624
KEGG ReactionR09454
KEGG Pathwayko00073,ko03050,map00073,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0000902,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0006959,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008283,GO:0009056,GO:0009057,GO:0009653,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019538,GO:0019774,GO:0019941,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0031984,GO:0032270,GO:0032436,GO:0032502,GO:0032940,GO:0032943,GO:0032989,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042098,GO:0042110,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046649,GO:0046651,GO:0046903,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070661,GO:0071704,GO:0071840,GO:0090068,GO:0097708,GO:0098827,GO:0099503,GO:0101002,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990111,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0173@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00199,ko01000,ko01002,ko03051,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-25_000980.1
Exons2
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931120.1984093-CDS-H-elongata_contig71889:426..5131622931120.1984093-CDS-H-elongata_contig71889:426..513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71889 427..513 -
1691679706.5203362-CDS-H-elongata_contig71889:426..5131691679706.5203362-CDS-H-elongata_contig71889:426..513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71889 427..513 -
1622931120.2136369-CDS-H-elongata_contig71889:1363..16541622931120.2136369-CDS-H-elongata_contig71889:1363..1654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71889 1364..1654 -
1691679706.5329204-CDS-H-elongata_contig71889:1363..16541691679706.5329204-CDS-H-elongata_contig71889:1363..1654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71889 1364..1654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71889.14866.1prot_H-elongata_contig71889.14866.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71889 427..1654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71889.14866.1

>prot_H-elongata_contig71889.14866.1 ID=prot_H-elongata_contig71889.14866.1|Name=mRNA_H-elongata_contig71889.14866.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
TGGFGFENHHRNKRIAEELARSGKQGSMPRAKLTGTTICGCVFKGGVVLG
ADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDL
LRLSTGTQSRVITACTMLKRMLFRYQ
back to top

mRNA from alignment at H-elongata_contig71889:427..1654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71889.14866.1 ID=mRNA_H-elongata_contig71889.14866.1|Name=mRNA_H-elongata_contig71889.14866.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1228bp|location=Sequence derived from alignment at H-elongata_contig71889:427..1654- (Himanthalia elongata Himel1 dioecious)
ACTGGAGGCTTCGGTTTTGAAAACCACCACCGAAACAAGCGCATCGCGGA
AGAGCTCGCCCGGTCCGGCAAGCAGGGCTCCATGCCGAGGGCGAAGCTCA
CGGGGACAACCATCTGCGGCTGCGTGTTTAAGGGAGGGGTAGTCCTCGGG
GCCGACACGCGCGCCACTGGGGGTACGGAGGTGGTCGATAAGAACTGCGA
GAAGATCCACTACCTAGCACCCAACATCTACTGCTGCGGTGCCGGAACGG
CGGCAGACACAGAGAAGACGACGGAGATGATCTCAGGACAGGTGGGATCG
AACAAACAAGACGTTACTATTATATATACTCATGCTAAAAAAGTATTAAT
GCTGCCGTCGTCTCCACTGCATTACCAAGGTCCACTTTTTCCCATGTTGG
CTTCGTGTTTGTGATGCTGCCGTTGTCGCACGAGAGCTCGACCTACGTCG
TTTCACTAGCTGTCCAGTTTTTGGTGTCGTTCGGTCTGTGGATGTCTCCG
GATTCAACGCGAGTGCGAGAGAATGCGAGGGCATGTGTGCCGATTGTGTT
TGTGTTTAGGTTAATGTTAGGTGAATGCAATAGAGACGCAGCAGTCTTCT
GCGGGGGGAAGTTGGGGTTTGGGTGGGAGAGGGGTAGGGACGGACGTTGT
GATTCATTTGCTAACATCGTGGTTCATCCCCCGGAACAGCGGTCATGAGG
CTCGTTGTCATCAGTAGCTCTGTACAGTAGCAAAAATTATTGAAAACCCC
GAGCATTTTCTGTGCGTGCAAGACATCAATAAGGTCGACTTGACTCGCTG
ATCCTTTGGAGAGGAGTTCCACAGAGAAAACAGAGGGCGTTCGCGTTGTA
ATTCCTTCGCTTATCGACTTCCTGATGATCCGGATCGATGAGGCCCGGAG
ATGAAGAGCAATATACCCCCTGTCACCGCTGCGCAGCCTAGCAAGTTCGT
TCGTTCGTTCGTTCTTTTTTTTCTTTTCTTTTTTCACACTAGGACGCTGG
TCTCACGTCCCAAGCCTGTTTGCATCACCACCCAGTTTTCATGACCCATC
TCTTTAAGCGCGCGTCGCCCACACGCGCGTGCGCTTCCGCTTCCCCTTCC
GCACCCCGCCTTTCGCGCGCCACCTTTCCCGCACGTCACAGCTGGACTTG
CTTCGGCTGTCAACAGGCACCCAATCTCGAGTCATCACGGCCTGCACCAT
GCTCAAGCGCATGCTCTTCCGCTACCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig71889:427..1654-

>mRNA_H-elongata_contig71889.14866.1 ID=mRNA_H-elongata_contig71889.14866.1|Name=mRNA_H-elongata_contig71889.14866.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig71889:427..1654- (Himanthalia elongata Himel1 dioecious)
ACTGGAGGCTTCGGTTTTGAAAACCACCACCGAAACAAGCGCATCGCGGA
AGAGCTCGCCCGGTCCGGCAAGCAGGGCTCCATGCCGAGGGCGAAGCTCA
CGGGGACAACCATCTGCGGCTGCGTGTTTAAGGGAGGGGTAGTCCTCGGG
GCCGACACGCGCGCCACTGGGGGTACGGAGGTGGTCGATAAGAACTGCGA
GAAGATCCACTACCTAGCACCCAACATCTACTGCTGCGGTGCCGGAACGG
CGGCAGACACAGAGAAGACGACGGAGATGATCTCAGGACAGACTGGAGGC
TTCGGTTTTGAAAACCACCACCGAAACAAGCGCATCGCGGAAGAGCTCGC
CCGGTCCGGCAAGCAGGGCTCCATGCCGAGGGCGAAGCTCACGGGGACAA
CCATCTGCGGCTGCGTGTTTAAGGGAGGGGTAGTCCTCGGGGCCGACACG
CGCGCCACTGGGGGTACGGAGGTGGTCGATAAGAACTGCGAGAAGATCCA
CTACCTAGCACCCAACATCTACTGCTGCGGTGCCGGAACGGCGGCAGACA
CAGAGAAGACGACGGAGATGATCTCAGGACAGCTGGACTTGCTTCGGCTG
TCAACAGGCACCCAATCTCGAGTCATCACGGCCTGCACCATGCTCAAGCG
CATGCTCTTCCGCTACCAGCTGGACTTGCTTCGGCTGTCAACAGGCACCC
AATCTCGAGTCATCACGGCCTGCACCATGCTCAAGCGCATGCTCTTCCGC
TACCAG
back to top