mRNA_H-elongata_contig71816.14856.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71816.14856.1
Unique NamemRNA_H-elongata_contig71816.14856.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71816.14856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71816contigH-elongata_contig71816:1576..2437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size308
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71816.14856.1prot_H-elongata_contig71816.14856.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71816 1576..2436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.1705873-CDS-H-elongata_contig71816:1575..17261622931119.1705873-CDS-H-elongata_contig71816:1575..1726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71816 1576..1726 -
1691679706.072801-CDS-H-elongata_contig71816:1575..17261691679706.072801-CDS-H-elongata_contig71816:1575..1726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71816 1576..1726 -
1622931119.1865368-CDS-H-elongata_contig71816:1958..20411622931119.1865368-CDS-H-elongata_contig71816:1958..2041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71816 1959..2041 -
1691679706.084648-CDS-H-elongata_contig71816:1958..20411691679706.084648-CDS-H-elongata_contig71816:1958..2041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71816 1959..2041 -
1622931119.1998518-CDS-H-elongata_contig71816:2364..24361622931119.1998518-CDS-H-elongata_contig71816:2364..2436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71816 2365..2436 -
1691679706.0961745-CDS-H-elongata_contig71816:2364..24361691679706.0961745-CDS-H-elongata_contig71816:2364..2436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71816 2365..2436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931119.2149925-UTR-H-elongata_contig71816:2436..24371622931119.2149925-UTR-H-elongata_contig71816:2436..2437Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71816 2437..2437 -
1691679706.1080976-UTR-H-elongata_contig71816:2436..24371691679706.1080976-UTR-H-elongata_contig71816:2436..2437Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71816 2437..2437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71816.14856.1

>prot_H-elongata_contig71816.14856.1 ID=prot_H-elongata_contig71816.14856.1|Name=mRNA_H-elongata_contig71816.14856.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MMVFSAYIIFPLTVGIPLFAYFLKLMVSIFPSKLEISRQKDLLGATDSRP
LSLRRHINEMVPSHGRAQDAETGRYSSNCTVSRSRKASMSKSPTEIGSYV
TA
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mRNA from alignment at H-elongata_contig71816:1576..2437-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71816.14856.1 ID=mRNA_H-elongata_contig71816.14856.1|Name=mRNA_H-elongata_contig71816.14856.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=862bp|location=Sequence derived from alignment at H-elongata_contig71816:1576..2437- (Himanthalia elongata Himel1 dioecious)
GATGATGGTTTTCTCCGCGTACATTATTTTCCCGTTGACGGTGGGTATTC
CCTTGTTTGCCTACTTCCTCAAGGTGGGTCGCCCGTGTTGCTCAGGGCAG
AACAGAGCCGAACAGGACGCCTTTATTGTATTTTGTATTGTATTTAGCAT
GTTTTTTCTCCCTCTCTCCCCAAAAGGTCGCAACGGGAGGGCGATGGAGG
AGAAAACTGTAGGCTCTATACTGTATATCTATATATATATATATACGTAT
GAGCGTTACTTCCGTCTATACCTTTGCCTCGTGGTTATTATATTCTGTAA
TATCATGGTTTTATAATGGTTTTATGGCATTATAGGCGGTTACTTTGTAT
TTTATTTTTGTTCGGTTTTTCCACTCCAATCCTCCTCCTCCAACAGCTCA
TGGTGTCCATCTTTCCCAGCAAGCTCGAGATTTCGAGGCAGAAGGATTTG
CTCGGTGCGACGGACTCCAGGCCTCTTAGGTACGAATGCTGTGAGGCCTG
ATACACTTTGATGCCACACCACACAACACCACCGCCTGCAGAGATGTCTT
TGATCCCACACCGCCTACAAGAAGCGTCAGTCATATTTTCATATACCCCT
TGTCCTCGTGATAGATGGCCTCCCCCCCACCCCCCCCCCTCTCTATCGTC
ACTAATTTTCTGGCGTATCGCTTTCTGTCTTCGGCGAAATCGAACCTTTT
TGCGAGCTCAGCTTGCGGAGGCACATCAACGAAATGGTCCCGAGCCATGG
TCGCGCCCAGGACGCCGAAACGGGACGCTACTCTTCGAACTGCACCGTCA
GCCGCAGCCGCAAGGCCTCCATGTCGAAGAGCCCAACTGAGATCGGGAGC
TACGTGACGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig71816:1576..2437-

>mRNA_H-elongata_contig71816.14856.1 ID=mRNA_H-elongata_contig71816.14856.1|Name=mRNA_H-elongata_contig71816.14856.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig71816:1576..2437- (Himanthalia elongata Himel1 dioecious)
ATGATGGTTTTCTCCGCGTACATTATTTTCCCGTTGACGGTGGGTATTCC
CTTGTTTGCCTACTTCCTCAAGATGATGGTTTTCTCCGCGTACATTATTT
TCCCGTTGACGGTGGGTATTCCCTTGTTTGCCTACTTCCTCAAGCTCATG
GTGTCCATCTTTCCCAGCAAGCTCGAGATTTCGAGGCAGAAGGATTTGCT
CGGTGCGACGGACTCCAGGCCTCTTAGCTCATGGTGTCCATCTTTCCCAG
CAAGCTCGAGATTTCGAGGCAGAAGGATTTGCTCGGTGCGACGGACTCCA
GGCCTCTTAGCTTGCGGAGGCACATCAACGAAATGGTCCCGAGCCATGGT
CGCGCCCAGGACGCCGAAACGGGACGCTACTCTTCGAACTGCACCGTCAG
CCGCAGCCGCAAGGCCTCCATGTCGAAGAGCCCAACTGAGATCGGGAGCT
ACGTGACGGCGCTTGCGGAGGCACATCAACGAAATGGTCCCGAGCCATGG
TCGCGCCCAGGACGCCGAAACGGGACGCTACTCTTCGAACTGCACCGTCA
GCCGCAGCCGCAAGGCCTCCATGTCGAAGAGCCCAACTGAGATCGGGAGC
TACGTGACGGCG
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