mRNA_H-elongata_contig71796.14852.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71796.14852.1
Unique NamemRNA_H-elongata_contig71796.14852.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71796.14852.1 vs. uniprot
Match: D8LSX6_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSX6_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.830e-21
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:   13 PSSEPHLNPSSAGELAADQWCERNCTALFEACCNCDPGKATRILEQSSERQLASR----MTRFRDDFQDSTLHVAASNGQAKVVQQLLARGADVNAVNNLGST 309
            PSS P  +   A  +   QWCERN  AL EACCN D GKA RIL Q+S   +       M   +DDF+D+ LH++A  G+  +V+ LLARGADV+A NNLGST
Sbjct:   51 PSSSPR-DELPAEVMKTGQWCERNSVALLEACCNRDVGKAARILGQASAEHVGEERMKNMVMLKDDFRDTALHLSACQGEVGIVKLLLARGADVHAQNNLGST 152
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BLAST of mRNA_H-elongata_contig71796.14852.1 vs. uniprot
Match: A0A2V3IRH3_9FLOR (Serine/threonine-protein kinase WNK2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRH3_9FLOR)

HSP 1 Score: 51.2 bits (121), Expect = 5.700e-5
Identity = 41/111 (36.94%), Postives = 55/111 (49.55%), Query Frame = 1 
Query:   25 PHLNPSSAGELAADQWCERNCTALFEACCNCDPGKATRILEQSSERQLASRMTRFRDDFQDSTLHVAASNGQAKVVQQLLARGADVNAVNNLGSTPLNRAAVAGMAEVRAL 357
            P   P +  E   DQ    NC  L + C     G+   +L++  ER  AS   RF D  + + LH+AA+ G  K+   LL RGADVNA +  G TPL  A +    EV+ L
Sbjct: 1178 PQEGPVTFREPKIDQKSYTNCLKLIDLCSR---GRYEEVLDKI-ERGGAS--PRFADYDRRTPLHIAAAEGHLKICALLLKRGADVNAKDRWGHTPLWDAKMNSHGEVQEL 1282
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BLAST of mRNA_H-elongata_contig71796.14852.1 vs. uniprot
Match: A0A3P9DIE1_9CICH (Uncharacterized protein n=1 Tax=Maylandia zebra TaxID=106582 RepID=A0A3P9DIE1_9CICH)

HSP 1 Score: 48.9 bits (115), Expect = 5.720e-5
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  214 LHVAASNGQAKVVQQLLARGADVNAVNNLGSTPLNRAAVAG 336
            LH+A S G   VV++LL  GADVN  NNLG TPL++AA AG
Sbjct:   53 LHLACSFGHRDVVEELLKAGADVNLQNNLGDTPLHKAAYAG 93
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BLAST of mRNA_H-elongata_contig71796.14852.1 vs. uniprot
Match: S9NTH0_9DELT (Ankyrin repeat protein n=2 Tax=Cystobacter fuscus TaxID=43 RepID=S9NTH0_9DELT)

HSP 1 Score: 50.8 bits (120), Expect = 7.010e-5
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  190 RDDFQDSTLHVAASNGQAKVVQQLLARGADVNAVNNLGSTPL 315
            RDD Q + LH AA+ G+A +V+ LLARGA+VNA++ LG TPL
Sbjct:  155 RDDNQQTPLHRAAARGRAPIVEILLARGAEVNAIDGLGRTPL 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71796.14852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSX6_ECTSI4.830e-2150.49Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSX6... [more]
A0A2V3IRH3_9FLOR5.700e-536.94Serine/threonine-protein kinase WNK2 n=1 Tax=Graci... [more]
A0A3P9DIE1_9CICH5.720e-560.98Uncharacterized protein n=1 Tax=Maylandia zebra Ta... [more]
S9NTH0_9DELT7.010e-559.52Ankyrin repeat protein n=2 Tax=Cystobacter fuscus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71796contigH-elongata_contig71796:2620..2976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue2.3e-17
Seed eggNOG ortholog2880.D8LSX6
KEGG koko:K15504
EggNOG free text desc.proteasome regulatory particle assembly
EggNOG OGsCOG0666@1,KOG4412@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_001790.1
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931118.8979402-CDS-H-elongata_contig71796:2619..29761622931118.8979402-CDS-H-elongata_contig71796:2619..2976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71796 2620..2976 +
1691679705.976366-CDS-H-elongata_contig71796:2619..29761691679705.976366-CDS-H-elongata_contig71796:2619..2976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71796 2620..2976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71796.14852.1prot_H-elongata_contig71796.14852.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71796 2620..2976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71796.14852.1

>prot_H-elongata_contig71796.14852.1 ID=prot_H-elongata_contig71796.14852.1|Name=mRNA_H-elongata_contig71796.14852.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
RSVLPSSEPHLNPSSAGELAADQWCERNCTALFEACCNCDPGKATRILEQ
SSERQLASRMTRFRDDFQDSTLHVAASNGQAKVVQQLLARGADVNAVNNL
GSTPLNRAAVAGMAEVRAL
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mRNA from alignment at H-elongata_contig71796:2620..2976+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71796.14852.1 ID=mRNA_H-elongata_contig71796.14852.1|Name=mRNA_H-elongata_contig71796.14852.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig71796:2620..2976+ (Himanthalia elongata Himel1 dioecious)
CGGTCCGTGCTCCCTTCCTCGGAGCCTCATCTAAATCCATCGTCCGCTGG
TGAGCTGGCGGCTGACCAGTGGTGCGAGAGAAACTGCACAGCGCTTTTCG
AAGCTTGCTGCAACTGCGACCCCGGTAAGGCTACGAGGATACTGGAACAA
TCGTCCGAGAGGCAGCTCGCCAGCAGGATGACTAGGTTCCGGGACGACTT
TCAGGACAGCACCCTGCACGTGGCTGCGAGCAATGGCCAGGCCAAAGTCG
TGCAACAGCTTCTCGCCAGAGGGGCGGACGTGAACGCTGTCAACAACCTG
GGAAGCACACCCTTGAATCGCGCTGCGGTCGCGGGCATGGCGGAGGTGCG
TGCTCTA
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Coding sequence (CDS) from alignment at H-elongata_contig71796:2620..2976+

>mRNA_H-elongata_contig71796.14852.1 ID=mRNA_H-elongata_contig71796.14852.1|Name=mRNA_H-elongata_contig71796.14852.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig71796:2620..2976+ (Himanthalia elongata Himel1 dioecious)
CGGTCCGTGCTCCCTTCCTCGGAGCCTCATCTAAATCCATCGTCCGCTGG
TGAGCTGGCGGCTGACCAGTGGTGCGAGAGAAACTGCACAGCGCTTTTCG
AAGCTTGCTGCAACTGCGACCCCGGTAAGGCTACGAGGATACTGGAACAA
TCGTCCGAGAGGCAGCTCGCCAGCAGGATGACTAGGTTCCGGGACGACTT
TCAGGACAGCACCCTGCACGTGGCTGCGAGCAATGGCCAGGCCAAAGTCG
TGCAACAGCTTCTCGCCAGAGGGGCGGACGTGAACGCTGTCAACAACCTG
GGAAGCACACCCTTGAATCGCGCTGCGGTCGCGGGCATGGCGGAGGTGCG
TGCTCTACGGTCCGTGCTCCCTTCCTCGGAGCCTCATCTAAATCCATCGT
CCGCTGGTGAGCTGGCGGCTGACCAGTGGTGCGAGAGAAACTGCACAGCG
CTTTTCGAAGCTTGCTGCAACTGCGACCCCGGTAAGGCTACGAGGATACT
GGAACAATCGTCCGAGAGGCAGCTCGCCAGCAGGATGACTAGGTTCCGGG
ACGACTTTCAGGACAGCACCCTGCACGTGGCTGCGAGCAATGGCCAGGCC
AAAGTCGTGCAACAGCTTCTCGCCAGAGGGGCGGACGTGAACGCTGTCAA
CAACCTGGGAAGCACACCCTTGAATCGCGCTGCGGTCGCGGGCATGGCGG
AGGTGCGTGCTCTA
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