mRNA_H-elongata_contig71796.14851.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71796.14851.1 vs. uniprot
Match: A0A6H5L2J2_9PHAE (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J2_9PHAE) HSP 1 Score: 226 bits (577), Expect = 1.360e-66 Identity = 114/170 (67.06%), Postives = 134/170 (78.82%), Query Frame = 2
Query: 191 RELQRTVVPSRVETVYQLGPHDVALSLRTLERNMWLRISWHPKGARCHVGGPPPREKEQKAYTFSQTLRALLRGLNIVAVELARPFERVISLDFASRLDTPPAYRLYVEIMASRSNAILVAVEEG-GKETVAACAYQVSPTKSVRPLST-------------GQPYQLPP 658
REL++++VP+RVE YQ+ H++AL LRTLE N+WL +SWHPKGARCHVGG PREKEQKAYTFSQTLR+ +RGLNI++V LARP ERV+ LD A RLDTP +RLYVEIMASRSN +LVAV+E G ET+AACAYQVSP+KSVRPLST GQ Y LPP
Sbjct: 3 RELEQSIVPARVENAYQMDAHNLALQLRTLEGNIWLHVSWHPKGARCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIISVGLARPMERVVRLDLAPRLDTPATFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKSVRPLSTERLADLSVLPPLAGQAYVLPP 172
BLAST of mRNA_H-elongata_contig71796.14851.1 vs. uniprot
Match: D8LSX7_ECTSI (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX7_ECTSI) HSP 1 Score: 218 bits (556), Expect = 1.250e-63 Identity = 107/144 (74.31%), Postives = 123/144 (85.42%), Query Frame = 2
Query: 230 TVYQLGPHDVALSLRTLERNMWLRISWHPKGARCHVGGPPPREKEQKAYTFSQTLRALLRGLNIVAVELARPFERVISLDFASRLDTPPAYRLYVEIMASRSNAILVAVEEG-GKETVAACAYQVSPTKSVRPLSTGQPYQLPP 658
T++++ H+VAL LRTLE NMWL +SWHPKGARCHVGG PREKEQKAYTFSQTLR+ + GLNIV+V LARP ERV+ LD A RLDTP +RLYVEIMASRSN +LVAV+E G ET+AACAYQVSP+KSVRPLSTGQ Y+LPP
Sbjct: 27 TLHEMDAHNVALQLRTLEGNMWLHVSWHPKGARCHVGGDVPREKEQKAYTFSQTLRSQIWGLNIVSVGLARPMERVVRLDLAPRLDTPSTFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKSVRPLSTGQAYELPP 170
BLAST of mRNA_H-elongata_contig71796.14851.1 vs. uniprot
Match: A0A835YY55_9STRA (Fibronectin-binding protein A N-terminus-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY55_9STRA) HSP 1 Score: 144 bits (364), Expect = 5.810e-41 Identity = 64/118 (54.24%), Postives = 88/118 (74.58%), Query Frame = 2
Query: 152 LQAVDFTTTLLLVRELQRTVVPSRVETVYQLGPHDVALSLRTLERNMWLRISWHPKGARCHVGGPPPREKEQKAYTFSQTLRALLRGLNIVAVELARPFERVISLDFASRLDTPPAYR 505
LQ+VDFTT LL+ REL +VP+RVE +Q+ ++A+ LR +E + WL ISWHP+GARCH+G PP+ KEQ++Y+FSQ LR LL+GL +V+V LA PFERV++ FA RL P ++
Sbjct: 1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGARCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAPTHK 118
BLAST of mRNA_H-elongata_contig71796.14851.1 vs. uniprot
Match: A0A0G4ENT6_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ENT6_VITBC) HSP 1 Score: 154 bits (390), Expect = 6.450e-40 Identity = 80/174 (45.98%), Postives = 109/174 (62.64%), Query Frame = 2
Query: 137 QPAQKLQAVDFTTTLLLVRELQRTVVPSRVETVYQLGPHDVALSLRTLERNMWLRISWHPKGARCHVGGPPPREKEQKAYTFSQTLRALLRGLNIVAVELARPFERVISLDFASRLDTPPAYRLYVEIMASRSNAILVAVEEGGKETVAACAYQVSPTKSVRPLSTGQPYQLPP 658
QP K Q VDFTT LL REL ++VPS V + +QL ++ L L TL WL + W K AR +G PP+ KE ++FS +R L+GL + A+ L +PF R++ + FA RL P ++L+VE+ RSN ILV+ + ++AACAYQV ++SVRPL TGQ YQLPP
Sbjct: 74 QPKAKKQTVDFTTLLLSCRELNASLVPSSVSSAFQLDDSNLLLGLTTLSGTRWLHLCWDAKAARLALGENPPK-KEILPFSFSHNIRLALKGLTLTAISLPQPFNRIVEMTFAPRLGRDPFFKLFVEVQGPRSNVILVSADTN---SIAACAYQVGASRSVRPLQTGQLYQLPP 243
BLAST of mRNA_H-elongata_contig71796.14851.1 vs. uniprot
Match: UPI001A0787B3 (NFACT family protein n=1 Tax=Pseudanabaenaceae cyanobacterium LEGE 13415 TaxID=2777976 RepID=UPI001A0787B3) HSP 1 Score: 144 bits (364), Expect = 9.660e-40 Identity = 78/170 (45.88%), Postives = 106/170 (62.35%), Query Frame = 2
Query: 152 LQAVDFTTTLLLVRELQRTVVPSRVETVYQLGPHDVALSLRTLERNMWLRISWHPKGARCHVGGPPPREKEQKAYTFSQTLRALLRGLNIVAVELARPFERVISLDFASRLDTPPAYRLYVEIMASRSNAILVAVEEGGKETVAACAYQVSPTKS-VRPLSTGQPYQLPP 658
+Q VD+TT + + EL+ +P+R E YQ V L+LRTL++ WL +SWHP+ AR H+ PPPR+ + +TFSQ LR L GL +V ++ P+ER I L FA R P + LY+EIM SNAILV E + A+QVS ++S VRP+ TGQPY+LPP
Sbjct: 1 MQPVDYTTLMAICAELRSQWLPARFEQAYQCDRFTVLLALRTLKKRGWLALSWHPQAARIHMSDPPPRDPD--TFTFSQQLRHQLGGLALVDIQPVSPWERAIDLQFAHRPGEPALWHLYIEIMGQYSNAILVNQENA----IVTAAHQVSSSQSSVRPIQTGQPYELPP 164
BLAST of mRNA_H-elongata_contig71796.14851.1 vs. uniprot
Match: B1XM13_SYNP2 (Rqc2 homolog RqcH n=12 Tax=Synechococcus TaxID=1129 RepID=B1XM13_SYNP2) HSP 1 Score: 152 bits (383), Expect = 2.300e-39 Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = 2
Query: 149 KLQAVDFTTTLLLVRELQRTVVPSRVETVYQLGPHDVALSLRTLERNMWLRISWHPKGARCHVGGPPPREKEQKAYTFSQTLRALLRGLNIVAVELARPFERVISLDFASRLDTPPAYRLYVEIMASRSNAILVAVEEGGKETVAACAYQVSPTKS-VRPLSTGQPYQLPP 658
K+QAVD+TT + LV ELQR VP+R+E VYQ + L+LRTLE+ WL +SWHP+ AR H+G PPR+ + +TFS LR L++G ++ +EL +P+ERV+ F R P + LYVEIM SN IL ++ + A Q+S +S VRP+ TGQPY+ PP
Sbjct: 2 KIQAVDYTTLVALVTELQRDWVPARLEQVYQYDKQTLCLALRTLEKREWLWLSWHPQAARMHLGDRPPRDPD--TFTFSDQLRHLIKGSALLGIELIQPWERVVDFQFGRRPGEVPQWHLYVEIMGKHSNVILANADQ----QIVTTAQQISGDRSTVRPVQTGQPYEFPP 166
BLAST of mRNA_H-elongata_contig71796.14851.1 vs. uniprot
Match: D8G6G5_9CYAN (Rqc2 homolog RqcH n=2 Tax=Microcoleaceae TaxID=1892252 RepID=D8G6G5_9CYAN) HSP 1 Score: 152 bits (383), Expect = 2.440e-39 Identity = 84/170 (49.41%), Postives = 107/170 (62.94%), Query Frame = 2
Query: 152 LQAVDFTTTLLLVRELQRTVVPSRVETVYQLGPHDVALSLRTLERNMWLRISWHPKGARCHVGGPPPREKEQKAYTFSQTLRALLRGLNIVAVELARPFERVISLDFASRLDTPPAYRLYVEIMASRSNAILVAVEEGGKETVAACAYQVSPTKS-VRPLSTGQPYQLPP 658
+Q VDFTT + EL+ +P+R+E VYQ H VAL+LRT+ R WL ISWHP+GAR +G PPPR + +TFSQ LR L L +VA+ P+ERVI L FA R P + LYVEIM+ SN IL + + CA+QVS +S VRP+ TGQPY+LPP
Sbjct: 4 VQPVDFTTLMAACCELRSDWLPARLEQVYQRDRHTVALALRTINRRGWLDISWHPQGARLCIGSPPPRTPD--TFTFSQQLRHQLGSLALVAIAQVAPWERVIDLQFARRPGEPALWHLYVEIMSKYSNVILTTQDN----LIVTCAHQVSAQQSSVRPIQTGQPYELPP 167
BLAST of mRNA_H-elongata_contig71796.14851.1 vs. uniprot
Match: K9PVM5_9CYAN (Rqc2 homolog RqcH n=2 Tax=Leptolyngbya sp. PCC 7376 TaxID=111781 RepID=K9PVM5_9CYAN) HSP 1 Score: 150 bits (380), Expect = 5.930e-39 Identity = 75/170 (44.12%), Postives = 109/170 (64.12%), Query Frame = 2
Query: 149 KLQAVDFTTTLLLVRELQRTVVPSRVETVYQLGPHDVALSLRTLERNMWLRISWHPKGARCHVGGPPPREKEQKAYTFSQTLRALLRGLNIVAVELARPFERVISLDFASRLDTPPAYRLYVEIMASRSNAILVAVEEGGKETVAACAYQVSPTKSVRPLSTGQPYQLPP 658
K+QAVD+TT + LV EL++ VP+++E VYQ + L+LRTL++ WL ISWHP+ AR H+G PPR+ + +TFS+ LR L++G ++ +E +P+ERV+ L F +R P + LYVEIM SN IL + ++ + S SVRP+ TGQPYQ+PP
Sbjct: 2 KIQAVDYTTLVALVAELRQDWVPAKLEQVYQYDKQTICLALRTLKKRDWLWISWHPQAARIHMGDRPPRDPD--TFTFSEQLRHLIKGSALIGLEFIQPWERVVDLQFGTRPGDPAKFHLYVEIMGKHSNVILT---DADQKIITTAQQITSDRSSVRPVETGQPYQVPP 166
BLAST of mRNA_H-elongata_contig71796.14851.1 vs. uniprot
Match: A0A1Q2TU73_9SYNE (Rqc2 homolog RqcH n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A1Q2TU73_9SYNE) HSP 1 Score: 150 bits (380), Expect = 6.490e-39 Identity = 77/171 (45.03%), Postives = 109/171 (63.74%), Query Frame = 2
Query: 149 KLQAVDFTTTLLLVRELQRTVVPSRVETVYQLGPHDVALSLRTLERNMWLRISWHPKGARCHVGGPPPREKEQKAYTFSQTLRALLRGLNIVAVELARPFERVISLDFASRLDTPPAYRLYVEIMASRSNAILVAVEEGGKETVAACAYQVSPTKS-VRPLSTGQPYQLPP 658
K+QAVD+TT + +V ELQ+ VP+R+E VYQ + L+LRTLE+ WL +SWHP+ AR H+G PPR+ + +TFS LR L++G ++ + L +P+ERV+ F R PP + LYVEIM SN IL ++ + A Q+S +S VRP+ TGQPY+ PP
Sbjct: 2 KIQAVDYTTLVAVVTELQQDWVPARLEQVYQYDKQTLCLALRTLEKREWLWLSWHPQAARLHLGDRPPRDPD--TFTFSDQLRHLIKGSALLGIALIQPWERVVDFQFGDRPGEPPQWHLYVEIMGKHSNVILANADQ----QIVTTAQQISGDRSAVRPVQTGQPYEFPP 166
BLAST of mRNA_H-elongata_contig71796.14851.1 vs. uniprot
Match: A0A651DR26_9CYAN (Rqc2 homolog RqcH n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A651DR26_9CYAN) HSP 1 Score: 150 bits (379), Expect = 7.880e-39 Identity = 81/170 (47.65%), Postives = 108/170 (63.53%), Query Frame = 2
Query: 152 LQAVDFTTTLLLVRELQRTVVPSRVETVYQLGPHDVALSLRTLERNMWLRISWHPKGARCHVGGPPPREKEQKAYTFSQTLRALLRGLNIVAVELARPFERVISLDFASRLDTPPAYRLYVEIMASRSNAILVAVEEGGKETVAACAYQVSPTKS-VRPLSTGQPYQLPP 658
+Q VD TT + EL+ +P+R+E VYQ H V+L+LRTLE WL I WHP+ A +GGPPPR + +TFSQ L+ L GL ++AV+L P+ERV+ FA R PP + LYVEIM SNAIL ++ T+ A+QVS +S VRP+ TGQPY++PP
Sbjct: 1 MQPVDLTTLTAVCAELRDGWLPARLEQVYQRDRHMVSLALRTLEGRSWLNICWHPQAAHLCLGGPPPRTPD--TFTFSQQLKHQLGGLALIAVDLIHPWERVVDFQFAQRPGEPPLWHLYVEIMGKYSNAILTHADQ----TIVTAAHQVSRQQSSVRPIQTGQPYEMPP 164 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71796.14851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71796.14851.1 >prot_H-elongata_contig71796.14851.1 ID=prot_H-elongata_contig71796.14851.1|Name=mRNA_H-elongata_contig71796.14851.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=216bp MGVPESPGDSNGGVASSSSTGSNGDRGSDSGNADCIRSEKNLQPAQKLQAback to top mRNA from alignment at H-elongata_contig71796:167..1640- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71796.14851.1 ID=mRNA_H-elongata_contig71796.14851.1|Name=mRNA_H-elongata_contig71796.14851.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1474bp|location=Sequence derived from alignment at H-elongata_contig71796:167..1640- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71796:167..1640- >mRNA_H-elongata_contig71796.14851.1 ID=mRNA_H-elongata_contig71796.14851.1|Name=mRNA_H-elongata_contig71796.14851.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1296bp|location=Sequence derived from alignment at H-elongata_contig71796:167..1640- (Himanthalia elongata Himel1 dioecious)back to top |