mRNA_H-elongata_contig71757.14849.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71757.14849.1
Unique NamemRNA_H-elongata_contig71757.14849.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71757.14849.1 vs. uniprot
Match: D8LKA1_ECTSI (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA1_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.170e-17
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 GHPLDNLLLEIKSYKFAQNREFKDCMRPAVEAVLDIAGAGTG 126
            GHPLDNLLLEIKSYKFAQNREFK+CMRPAVE VLD+AGA TG
Sbjct:  485 GHPLDNLLLEIKSYKFAQNREFKECMRPAVELVLDLAGADTG 526
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BLAST of mRNA_H-elongata_contig71757.14849.1 vs. uniprot
Match: A0A835YX04_9STRA (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX04_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.250e-12
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 GHPLDNLLLEIKSYKFAQNREFKDCMRPAVEAVLDIAGAG 120
            GHP+DNLLLEIK YKFAQNR F +C+R + EAVLD+AG G
Sbjct:  579 GHPIDNLLLEIKGYKFAQNRSFAECIRASTEAVLDLAGCG 618
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BLAST of mRNA_H-elongata_contig71757.14849.1 vs. uniprot
Match: A0A484EBE6_BRELC (W2 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBE6_BRELC)

HSP 1 Score: 50.1 bits (118), Expect = 7.470e-6
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 GHPLDNLLLEIKSYKFAQNREFKDCMRPAVEAVLDIAGAGTGQ 129
            GH +D+L +EIKS+KFAQNR F + +   V  +LD+   G GQ
Sbjct:  452 GHNVDDLFMEIKSFKFAQNRSFAEVIEAIVPGLLDLVPTGNGQ 494
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BLAST of mRNA_H-elongata_contig71757.14849.1 vs. uniprot
Match: A0A662X097_9STRA (W2 domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X097_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.470e-6
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 GHPLDNLLLEIKSYKFAQNREFKDCMRPAVEAVLDIAGAGTGQ 129
            GH +D+L +EIKS+KFAQNR F + +   V  +LD+  AG GQ
Sbjct:  298 GHNVDDLFMEIKSFKFAQNRSFAEVIGAIVPGLLDLVPAGHGQ 340
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BLAST of mRNA_H-elongata_contig71757.14849.1 vs. uniprot
Match: A0A3R7J8W0_9STRA (W2 domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J8W0_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.400e-5
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 GHPLDNLLLEIKSYKFAQNREFKDCMRPAVEAVLDIAGAGTGQ 129
            GH +D+L +EIKS+KFAQNR F + +   V  +LD+  +G GQ
Sbjct:  582 GHNVDDLFMEIKSFKFAQNRSFAEVIGAIVPGLLDLIPSGNGQ 624
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BLAST of mRNA_H-elongata_contig71757.14849.1 vs. uniprot
Match: A0A2P4YLK1_9STRA (Translation initiation factor eIF-2B subunit epsilon n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLK1_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.910e-5
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 GHPLDNLLLEIKSYKFAQNREFKDCMRPAVEAVLDIAGAGTGQ 129
            GH +D+L +EIKS+KFAQNR F + +   V  +LD+   G GQ
Sbjct:  278 GHNVDDLFMEIKSFKFAQNRSFAEVIGAIVPGLLDLIPTGNGQ 320
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BLAST of mRNA_H-elongata_contig71757.14849.1 vs. uniprot
Match: A0A4D9CXC6_9STRA (W2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXC6_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    4 HPLDNLLLEIKSYKFAQNREFKDCMRPAVEAVLDIA 111
            H + NLLLEIKS+KFAQNR +   MR  V A+LD+A
Sbjct:  621 HAISNLLLEIKSFKFAQNRSYAAVMRAVVPALLDLA 656
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BLAST of mRNA_H-elongata_contig71757.14849.1 vs. uniprot
Match: V9FXQ7_PHYPR (W2 domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=V9FXQ7_PHYPR)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 GHPLDNLLLEIKSYKFAQNREFKDCMRPAVEAVLDIAGAGTGQ 129
            GH +D+L +EIKS+KFAQNR F + +   +  +LD+   G GQ
Sbjct:  572 GHNVDDLFMEIKSFKFAQNRSFAEVIGAIIPGLLDLIPTGNGQ 614
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BLAST of mRNA_H-elongata_contig71757.14849.1 vs. uniprot
Match: A0A0P1AK76_PLAHL (Translation initiation factor eif-2b subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AK76_PLAHL)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 GHPLDNLLLEIKSYKFAQNREFKDCMRPAVEAVLDIAGAGTGQ 129
            GH +D+L +EIKS+KFAQNR F + +   +  +LD+   G GQ
Sbjct:  522 GHNVDDLFMEIKSFKFAQNRSFAEVIGAIIPGLLDLVPTGIGQ 564
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BLAST of mRNA_H-elongata_contig71757.14849.1 vs. uniprot
Match: K8ZBZ7_NANGC (Translation initiation factor eIF-2B subunit epsilon n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBZ7_NANGC)

HSP 1 Score: 48.5 bits (114), Expect = 2.620e-5
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    4 HPLDNLLLEIKSYKFAQNREFKDCMRPAVEAVLDIA 111
            H + NLLLEIKS+KFAQNR +   MR  V A+LD+A
Sbjct:  521 HAISNLLLEIKSFKFAQNRSYAAVMRAVVPALLDLA 556
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71757.14849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LKA1_ECTSI1.170e-1790.48eIF-2B GDP-GTP exchange factor subunit epsilon n=2... [more]
A0A835YX04_9STRA2.250e-1272.50eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
A0A484EBE6_BRELC7.470e-648.84W2 domain-containing protein n=1 Tax=Bremia lactuc... [more]
A0A662X097_9STRA7.470e-651.16W2 domain-containing protein (Fragment) n=2 Tax=No... [more]
A0A3R7J8W0_9STRA1.400e-548.84W2 domain-containing protein n=4 Tax=Phytophthora ... [more]
A0A2P4YLK1_9STRA1.910e-548.84Translation initiation factor eIF-2B subunit epsil... [more]
A0A4D9CXC6_9STRA2.620e-561.11W2 domain-containing protein n=2 Tax=Monodopsidace... [more]
V9FXQ7_PHYPR2.620e-546.51W2 domain-containing protein n=14 Tax=Phytophthora... [more]
A0A0P1AK76_PLAHL2.620e-546.51Translation initiation factor eif-2b subunit n=1 T... [more]
K8ZBZ7_NANGC2.620e-561.11Translation initiation factor eIF-2B subunit epsil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71757contigH-elongata_contig71757:2608..2736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue3.3e-14
Seed eggNOG ortholog2880.D8LKA1
Preferred nameEIF2B5
KEGG koko:K03240,ko:K03859
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,ko03013,map00563,map01100,map03013
GOsGO:0000003,GO:0001541,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0008135,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010001,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010941,GO:0010942,GO:0014002,GO:0014003,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0023052,GO:0030154,GO:0030900,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0032045,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034284,GO:0034641,GO:0034645,GO:0034976,GO:0042063,GO:0042221,GO:0042552,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045727,GO:0045948,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048708,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060322,GO:0061458,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1208@1,KOG1461@2759
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931118.655988-CDS-H-elongata_contig71757:2607..27361622931118.655988-CDS-H-elongata_contig71757:2607..2736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71757 2608..2736 -
1691679705.9064581-CDS-H-elongata_contig71757:2607..27361691679705.9064581-CDS-H-elongata_contig71757:2607..2736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71757 2608..2736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71757.14849.1prot_H-elongata_contig71757.14849.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71757 2608..2736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71757.14849.1

>prot_H-elongata_contig71757.14849.1 ID=prot_H-elongata_contig71757.14849.1|Name=mRNA_H-elongata_contig71757.14849.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
GHPLDNLLLEIKSYKFAQNREFKDCMRPAVEAVLDIAGAGTGQ
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mRNA from alignment at H-elongata_contig71757:2608..2736-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71757.14849.1 ID=mRNA_H-elongata_contig71757.14849.1|Name=mRNA_H-elongata_contig71757.14849.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig71757:2608..2736- (Himanthalia elongata Himel1 dioecious)
GGTCACCCCCTGGACAACCTTCTCTTGGAGATCAAGAGCTATAAGTTCGC
GCAGAACCGCGAGTTTAAGGACTGCATGCGGCCGGCCGTAGAGGCGGTGC
TCGACATAGCCGGTGCAGGAACAGGCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig71757:2608..2736-

>mRNA_H-elongata_contig71757.14849.1 ID=mRNA_H-elongata_contig71757.14849.1|Name=mRNA_H-elongata_contig71757.14849.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig71757:2608..2736- (Himanthalia elongata Himel1 dioecious)
GGTCACCCCCTGGACAACCTTCTCTTGGAGATCAAGAGCTATAAGTTCGC
GCAGAACCGCGAGTTTAAGGACTGCATGCGGCCGGCCGTAGAGGCGGTGC
TCGACATAGCCGGTGCAGGAACAGGCCAGGGTCACCCCCTGGACAACCTT
CTCTTGGAGATCAAGAGCTATAAGTTCGCGCAGAACCGCGAGTTTAAGGA
CTGCATGCGGCCGGCCGTAGAGGCGGTGCTCGACATAGCCGGTGCAGGAA
CAGGCCAG
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