mRNA_H-elongata_contig7169.14842.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig7169.14842.1
Unique Name	mRNA_H-elongata_contig7169.14842.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig7169.14842.1 vs. uniprot
Match: A0A7S4HPX0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HPX0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.240e-13
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1

Query:   13 LGAGGMADTRDPYEMDHEDPRKSISAAPTFEEYIKMRQS 129
            LGAGGMADTRDP  +DH+DPRKSISAAP+FEEY+K+R S
Sbjct:   39 LGAGGMADTRDPDALDHDDPRKSISAAPSFEEYLKLRDS 77

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BLAST of mRNA_H-elongata_contig7169.14842.1 vs. uniprot
Match: A0A7R9ZBD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBD2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.870e-13
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1

Query:   10 ELGAGGMADTRDPYEMDHEDPRKSISAAPTFEEYIKMRQS 129
            E GAGGM DTR+P  M+HEDPRKSISAAP+FEEY+KMR+S
Sbjct:   66 EKGAGGMFDTRNPDAMEHEDPRKSISAAPSFEEYLKMRES 105

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BLAST of mRNA_H-elongata_contig7169.14842.1 vs. uniprot
Match: A0A835YTB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.700e-13
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1

Query:    1 NEGELGAGGMADTRDPYEMDHEDPRKSISAAPTFEEYIKMRQSS 132
            +E   G GGMADTRDP  +DHEDPRKSIS APTFEEY+K +Q++
Sbjct:   34 DEKHRGVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQKQAA 77

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BLAST of mRNA_H-elongata_contig7169.14842.1 vs. uniprot
Match: A0A7S2MQH4_9STRA (Hypothetical protein (Fragment) n=3 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQH4_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.490e-12
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1

Query:    1 NEGELGAGGMADTRDPYEMDHEDPRKSISAAPTFEEYIKMR 123
            N+  +G+GGMADTRDP  M+HEDPRKSISAAP+FEEY+K R
Sbjct:   30 NDLHIGSGGMADTRDPDAMEHEDPRKSISAAPSFEEYLKSR 70

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BLAST of mRNA_H-elongata_contig7169.14842.1 vs. uniprot
Match: A0A835YLE0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.750e-12
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1

Query:   16 GAGGMADTRDPYEMDHEDPRKSISAAPTFEEYIKMRQS 129
            G GGMADTRDP  +DHEDPRKSIS APTFEEY+K +Q+
Sbjct:   37 GVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQKQA 74

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BLAST of mRNA_H-elongata_contig7169.14842.1 vs. uniprot
Match: A0A7S1Z902_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z902_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.960e-12
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1

Query:    1 NEGELGAGGMADTRDPYEMDHEDPRKSISAAPTFEEYIKMR 123
            N G +G+GGMADTR+P  ++HEDPRKSISAAP+FEEY+K R
Sbjct:   31 NGGHIGSGGMADTRNPDALNHEDPRKSISAAPSFEEYLKSR 71

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BLAST of mRNA_H-elongata_contig7169.14842.1 vs. uniprot
Match: A0A6U6EBV6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6EBV6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.870e-12
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1

Query:   16 GAGGMADTRDPYEMDHEDPRKSISAAPTFEEYIKMR 123
            GAGGM DTRDP  MDHEDPRKSISAAP+FEEY+K R
Sbjct:   54 GAGGMFDTRDPETMDHEDPRKSISAAPSFEEYLKSR 89

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BLAST of mRNA_H-elongata_contig7169.14842.1 vs. uniprot
Match: A0A1E7F0Y3_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0Y3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.010e-11
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1

Query:    1 NEG-ELGAGGMADTRDPYEMDHEDPRKSISAAPTFEEYIKMRQS 129
            NEG E+GAGGMADTR+P   D+EDPRKSIS AP+FEEY+K R +
Sbjct:   32 NEGPEIGAGGMADTRNPDAADNEDPRKSISEAPSFEEYLKQRDA 75

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BLAST of mRNA_H-elongata_contig7169.14842.1 vs. uniprot
Match: A0A7S2JSU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSU5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.630e-11
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1

Query:   13 LGAGGMADTRDPYEMDHEDPRKSISAAPTFEEYIKMRQSS 132
            LGAGGMADTRDP E   +DPRKSISAAP+FEEY+K R  +
Sbjct:   31 LGAGGMADTRDPEEYSDDDPRKSISAAPSFEEYLKQRSGA 70

[Close]

BLAST of mRNA_H-elongata_contig7169.14842.1 vs. uniprot
Match: A0A7S1U0L3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0L3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.700e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1

Query:   13 LGAGGMADTRDPYEMDHEDPRKSISAAPTFEEYIKMRQ 126
            LGAGGMADTRDP   DH+DPR SIS APTFEEY+K  Q
Sbjct:   36 LGAGGMADTRDPDSFDHDDPRMSISRAPTFEEYMKKSQ 73

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig7169.14842.1 vs. uniprot

BLAST of mRNA_H-elongata_contig7169.14842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S4HPX0_9STRA	4.240e-13	79.49	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7R9ZBD2_9STRA	4.870e-13	77.50	Hypothetical protein (Fragment) n=1 Tax=Pseudictyo...	[more]
A0A835YTB4_9STRA	8.700e-13	68.18	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2MQH4_9STRA	1.490e-12	73.17	Hypothetical protein (Fragment) n=3 Tax=Helicothec...	[more]
A0A835YLE0_9STRA	1.750e-12	76.32	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S1Z902_9STRA	2.960e-12	70.73	Hypothetical protein (Fragment) n=3 Tax=Ditylum br...	[more]
A0A6U6EBV6_9STRA	4.870e-12	83.33	Hypothetical protein (Fragment) n=1 Tax=Odontella ...	[more]
A0A1E7F0Y3_9STRA	1.010e-11	70.45	Uncharacterized protein n=1 Tax=Fragilariopsis cyl...	[more]
A0A7S2JSU5_9STRA	1.630e-11	72.50	Hypothetical protein (Fragment) n=1 Tax=Leptocylin...	[more]
A0A7S1U0L3_9STRA	1.700e-11	76.32	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig7169	contig	H-elongata_contig7169:7292..7426 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	135
Cds size	108
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931118.0647912-CDS-H-elongata_contig7169:7291..7399	1622931118.0647912-CDS-H-elongata_contig7169:7291..7399	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig7169 7292..7399 -
1691679705.6268482-CDS-H-elongata_contig7169:7291..7399	1691679705.6268482-CDS-H-elongata_contig7169:7291..7399	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig7169 7292..7399 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931118.0808127-UTR-H-elongata_contig7169:7399..7426	1622931118.0808127-UTR-H-elongata_contig7169:7399..7426	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig7169 7400..7426 -
1691679705.6439118-UTR-H-elongata_contig7169:7399..7426	1691679705.6439118-UTR-H-elongata_contig7169:7399..7426	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig7169 7400..7426 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig7169.14842.1	prot_H-elongata_contig7169.14842.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig7169 7292..7399 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig7169:7292..7426-
coding sequence from alignment at H-elongata_contig7169:7292..7426-

protein sequence of mRNA_H-elongata_contig7169.14842.1

>prot_H-elongata_contig7169.14842.1 ID=prot_H-elongata_contig7169.14842.1|Name=mRNA_H-elongata_contig7169.14842.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MADTRDPYEMDHEDPRKSISAAPTFEEYIKMRQSS*

mRNA from alignment at H-elongata_contig7169:7292..7426-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig7169.14842.1 ID=mRNA_H-elongata_contig7169.14842.1|Name=mRNA_H-elongata_contig7169.14842.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig7169:7292..7426- (Himanthalia elongata Himel1 dioecious)
AATGAAGGGGAGCTTGGGGCAGGGGGCATGGCGGACACGCGTGATCCTTA
CGAGATGGATCACGAAGATCCGCGTAAGTCTATCTCGGCCGCTCCCACGT
TCGAGGAATATATCAAGATGAGACAAAGCTCGTGA

Coding sequence (CDS) from alignment at H-elongata_contig7169:7292..7426-

>mRNA_H-elongata_contig7169.14842.1 ID=mRNA_H-elongata_contig7169.14842.1|Name=mRNA_H-elongata_contig7169.14842.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig7169:7292..7426- (Himanthalia elongata Himel1 dioecious)
ATGGCGGACACGCGTGATCCTTACGAGATGGATCACGAAGATCCGCGTAA
GTCTATCTCGGCCGCTCCCACGTTCGAGGAATATATCAAGATGAGACAAA
GCTCGTGAATGGCGGACACGCGTGATCCTTACGAGATGGATCACGAAGAT
CCGCGTAAGTCTATCTCGGCCGCTCCCACGTTCGAGGAATATATCAAGAT
GAGACAAAGCTCGTGA