mRNA_H-elongata_contig71656.14838.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71656.14838.1
Unique NamemRNA_H-elongata_contig71656.14838.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71656.14838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71656contigH-elongata_contig71656:30..2206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size227
Cds size123
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71656.14838.1prot_H-elongata_contig71656.14838.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71656 35..2107 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.7677991-UTR-H-elongata_contig71656:29..341622931117.7677991-UTR-H-elongata_contig71656:29..34Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71656 30..34 +
1691679705.5010111-UTR-H-elongata_contig71656:29..341691679705.5010111-UTR-H-elongata_contig71656:29..34Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71656 30..34 +
1622931117.821294-UTR-H-elongata_contig71656:2107..22061622931117.821294-UTR-H-elongata_contig71656:2107..2206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71656 2108..2206 +
1691679705.5267296-UTR-H-elongata_contig71656:2107..22061691679705.5267296-UTR-H-elongata_contig71656:2107..2206Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71656 2108..2206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.785155-CDS-H-elongata_contig71656:34..1011622931117.785155-CDS-H-elongata_contig71656:34..101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71656 35..101 +
1691679705.5100455-CDS-H-elongata_contig71656:34..1011691679705.5100455-CDS-H-elongata_contig71656:34..101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71656 35..101 +
1622931117.8023193-CDS-H-elongata_contig71656:2051..21071622931117.8023193-CDS-H-elongata_contig71656:2051..2107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71656 2052..2107 +
1691679705.5183196-CDS-H-elongata_contig71656:2051..21071691679705.5183196-CDS-H-elongata_contig71656:2051..2107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71656 2052..2107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71656.14838.1

>prot_H-elongata_contig71656.14838.1 ID=prot_H-elongata_contig71656.14838.1|Name=mRNA_H-elongata_contig71656.14838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MEREACVCDHGLEISDLCAEIITLDCTYGDKKVWMFGELE*
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mRNA from alignment at H-elongata_contig71656:30..2206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71656.14838.1 ID=mRNA_H-elongata_contig71656.14838.1|Name=mRNA_H-elongata_contig71656.14838.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2177bp|location=Sequence derived from alignment at H-elongata_contig71656:30..2206+ (Himanthalia elongata Himel1 dioecious)
ATGGTATGGAAAGGGAAGCCTGCGTCTGTGACCACGGGCTCGAGATATCG
GACTTATGTGCGGAAATAATAAGGCCCGTTTTAAACATGCCCTTTTTTTG
TCAAATAGTTTGAAAAATCAAACATTTGAACATACTAAACGAGGCGTTTG
TCACAATTTGGTGTCAAAAACTTGGGAGCAATTTACGGGCCAAAAGTGTG
AACGAGTTGCTTCTAATATTCTGATAGTTTTTCAAACATTTTGGCGCAGT
TTGTGAAAAAAAATGTCAAAATTTTCTACATTTTGTTTTATGTTTAAAAC
AGCCCCAATAATAATAATAATAATAATTTCAGAGAAAAACATTTGATTCG
ATTATCGAGGATCTGTAGAACATAGACTTGGCTGGTCTCTTTCCCCCCAA
CCCCAATTACTGCTGCTGCCTTGGCTTGGTCATGGGGGTCGATGAGGGTG
ACCGGAAGACTATTCGGGCTATTACGTATAGACAGTCCTTCCCGTATTAC
GATATCATAGATATTGCATTCTCACTTTTGATTGTACAGCAGCAGCAGCA
GCAGCAGTAGTGAAATAAAAATAACAGACAAACCTTAGTTGCGAGATGGC
GTAGTACGATCCCAGATACACCCATCGCCAGAAAGTAGGCCATGGAAAGT
ATTTTCCTGTGGCGTCGCAACGAAGTCTCGTCGCCCATTTTTGCAGTATC
AGAAGCGGTGCTGGCTTGTCGCGCAAGGGACGAGGTCGAAGCAGTACTCC
ATGCATCCGCTGCCTCAACAAGACTCACGTAGCCCCTACGGGTTTCTTCG
CGACTCATGTGTCGCGCTTGCTCTTGCCATGTGGTGAGCTCCTGCCGCTG
AACGATGAGTTATTACTCAACAACTTCCCCACGCTTGCTCCTCTGTCCAA
AACCCGCTAGCGCTACCGGTGCTACTTCTGCAGCAAGTAGCAGCACTTAA
AACGCCAAGCAGCAACAATAACCTTCAGTGAGGTTGATAATCATAAAGTG
CAGAAGAGGCTCTTCGATCGGCCGCCTAATTTGCTCCTTTGTTCTTCTAG
TGTGTTAGAAGCTACTGTTGACGGGCTGATGATCTCGAAAACTTTCAAGC
CCAGTCGTTATGCGTGATCGTATTCGTATCTGATGTGATCTCCGGAGCGT
ACTATATAAATATATATAAAATCACGTTGTTTTGATTCATAGGTAGCGAA
TGTATTGTCCATCAACCCGACCTTTTCCCTTTTGTATCAATTTGCATTAA
AGCGCACAATAATTTCCAAACAAAACCCCGAGAAAACGGGACGAGACTGT
CGAAATCATTATTTTGAAAAACATTAACTTCTTTCCATAAAATTTGCTTT
CTTGCCCAAGCTTGTTCCTGCGATTTCTACTTTATTAGTCGTGTTGCTAC
ACAGTACTTTTTCACAATTTTATTAGTTTGGATATCAGTTTTTCCGATAA
CCAATAATAGAGCCCTATATAGGTATTATTATCAATTTTACTTATCTTAG
GTACCAATGGTCTACTTTTCATAACACGCGAGGCATGAAAATTGCTTTTT
TGCCCGAGCTTGTTCCTGCGATTTCTACTTCATTCATATTAGTCGTGTTG
CTACACAGCACTTTTTCACAATTTTATTTAGTTTGGATAACGGGTCTGTG
TTGCTACACAGTAGTTTTCACAATTTTATTAGCTTGGATATTGGTTTTTC
CGATAACCAATGCAAGCTATACAATATATATATATATATATAATAGAGCC
CTACTATACAGATAATAACCCTAACGTAGCCTCTGTGAAACGGACTTATA
TACCTAAATATCTAACTATTTGATGAGCACCCACCTCCCCCCTGCTGATC
GACAATAAAATAAAGTCGTTTATAAATAATAATAATAATTTGTTCTATAC
AATAGAGCCCGAATTACATTTCAGCCCCTAATATAGTTACAGTATTAGTA
ACCCTAATAACATTAACATCATCATTATTATTACCATTGTTTATGCTCAT
TCCTACTTCCCGATAGTTGGTCCCCTGGATTGCACTTATGGTGACAAGAA
GGTGTGGATGTTCGGAGAGTTAGAATGAGTCCAAAGTCTTTTATAAATAA
AAATAATCTTACTTCACCTTTTTCATTCATGATCTTCGTCCCCACATGAC
CCGGCGACCTTACTATTTATACTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig71656:30..2206+

>mRNA_H-elongata_contig71656.14838.1 ID=mRNA_H-elongata_contig71656.14838.1|Name=mRNA_H-elongata_contig71656.14838.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig71656:30..2206+ (Himanthalia elongata Himel1 dioecious)
ATGGAAAGGGAAGCCTGCGTCTGTGACCACGGGCTCGAGATATCGGACTT
ATGTGCGGAAATAATAAATGGAAAGGGAAGCCTGCGTCTGTGACCACGGG
CTCGAGATATCGGACTTATGTGCGGAAATAATAACCCTGGATTGCACTTA
TGGTGACAAGAAGGTGTGGATGTTCGGAGAGTTAGAATGACCCTGGATTG
CACTTATGGTGACAAGAAGGTGTGGATGTTCGGAGAGTTAGAATGA
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