mRNA_H-elongata_contig71633.14834.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71633.14834.1
Unique NamemRNA_H-elongata_contig71633.14834.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71633.14834.1 vs. uniprot
Match: D7FZW1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZW1_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 1.300e-114
Identity = 177/269 (65.80%), Postives = 213/269 (79.18%), Query Frame = 1 
Query:    1 SYYQARQTASTTVNLTATAYYLAGKTY-----NSLETRYVWPAPYDLDEEERQALETAAREGGDDCESVEDCVGGIIGWIGGVVGADTCVGVEVPCPDIDATNTLVEYEASQMSIDLFGNSTAI---AYNTTLAQTALDQATDAITELVRRINFASSIYVIYLAFLVVVTPPFIVYGARWKHRVVDLLANVNKPMWIALIVLVWYAQEFFKSIITSSLYSVLWANFLRDPCWADPDFLTNTSMVISNTCKDITSAQNLFNQASANYRYY 783
            +YY AR TAS  VN+TATAY+ A +TY     N+L   + WP+PYDL+EE+RQ LET AREGGDDCE VE+CVGG+ G+ G +VG  TCV  EVPCPDI++T  LVEY+ASQ ++DLFGN+       Y  TLAQ+ALD AT AI+ LVRRINFASSIYV+YL F V+V PPFIVYGA+W  R+ ++L+NVNKPMWIALIVLVWY  E F+SII SSLY+++W+NFL+DPCWADP+FL NTSMVIS TC +I SA NLFNQA ANYRYY
Sbjct:  107 NYYNARATASLAVNITATAYFKAAETYTGEGLNALGLAFEWPSPYDLNEEQRQELETEAREGGDDCEPVEECVGGVAGFFGDIVGETTCVETEVPCPDIESTELLVEYDASQQALDLFGNNITAYDEEYAETLAQSALDDATSAISVLVRRINFASSIYVLYLVFTVLVPPPFIVYGAKWNVRIFEVLSNVNKPMWIALIVLVWYGHELFQSIINSSLYNIIWSNFLQDPCWADPEFLVNTSMVISETCTEIISASNLFNQAGANYRYY 375
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BLAST of mRNA_H-elongata_contig71633.14834.1 vs. uniprot
Match: A0A7S4ILM4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ILM4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.270e-7
Identity = 31/130 (23.85%), Postives = 68/130 (52.31%), Query Frame = 1 
Query:  391 DQATDAITELVRRINFASSIYVIYLAFLVVVTPPFIVYGARWKHRVVDLLANVNKPMWIALIVLVWYAQEFFKSIITSSLYSVLWANFLRDPCWADPDFLTNTSMVISNTCKDITSAQN---LFNQASAN 771
            ++  + IT LVR+++ AS++YV+Y+   +    P  ++ + +      ++    K ++I ++++ W+  ++ +S   S  + +     L DPC+AD +FL N S  +   C ++   ++   L N A+ N
Sbjct:  136 EKGEEVITTLVRQVDIASTLYVVYVCVSLFFPSPVYIFRSNYVVAAKRIVFGAQKHVFILVVLVFWWGLKYLQSFRVSLEFQLYMQKLLSDPCYADAEFLANASKALDVACDELLPMESEWKLMNSATRN 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71633.14834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZW1_ECTSI1.300e-11465.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4ILM4_9STRA3.270e-723.85Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71633contigH-elongata_contig71633:436..3130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_003880.1
Hectar predicted targeting categoryother localisation
Exons5
Model size783
Cds size783
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71633.14834.1prot_H-elongata_contig71633.14834.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71633 436..3130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.4246936-CDS-H-elongata_contig71633:435..5051622931117.4246936-CDS-H-elongata_contig71633:435..505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71633 436..505 -
1691679705.3189633-CDS-H-elongata_contig71633:435..5051691679705.3189633-CDS-H-elongata_contig71633:435..505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71633 436..505 -
1622931117.4400365-CDS-H-elongata_contig71633:880..10871622931117.4400365-CDS-H-elongata_contig71633:880..1087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71633 881..1087 -
1691679705.3276544-CDS-H-elongata_contig71633:880..10871691679705.3276544-CDS-H-elongata_contig71633:880..1087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71633 881..1087 -
1622931117.464211-CDS-H-elongata_contig71633:1766..19481622931117.464211-CDS-H-elongata_contig71633:1766..1948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71633 1767..1948 -
1691679705.338928-CDS-H-elongata_contig71633:1766..19481691679705.338928-CDS-H-elongata_contig71633:1766..1948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71633 1767..1948 -
1622931117.4766703-CDS-H-elongata_contig71633:2242..24221622931117.4766703-CDS-H-elongata_contig71633:2242..2422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71633 2243..2422 -
1691679705.3606188-CDS-H-elongata_contig71633:2242..24221691679705.3606188-CDS-H-elongata_contig71633:2242..2422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71633 2243..2422 -
1622931117.4900334-CDS-H-elongata_contig71633:2986..31301622931117.4900334-CDS-H-elongata_contig71633:2986..3130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71633 2987..3130 -
1691679705.3703153-CDS-H-elongata_contig71633:2986..31301691679705.3703153-CDS-H-elongata_contig71633:2986..3130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71633 2987..3130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71633.14834.1

>prot_H-elongata_contig71633.14834.1 ID=prot_H-elongata_contig71633.14834.1|Name=mRNA_H-elongata_contig71633.14834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
SYYQARQTASTTVNLTATAYYLAGKTYNSLETRYVWPAPYDLDEEERQAL
ETAAREGGDDCESVEDCVGGIIGWIGGVVGADTCVGVEVPCPDIDATNTL
VEYEASQMSIDLFGNSTAIAYNTTLAQTALDQATDAITELVRRINFASSI
YVIYLAFLVVVTPPFIVYGARWKHRVVDLLANVNKPMWIALIVLVWYAQE
FFKSIITSSLYSVLWANFLRDPCWADPDFLTNTSMVISNTCKDITSAQNL
FNQASANYRYY
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mRNA from alignment at H-elongata_contig71633:436..3130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71633.14834.1 ID=mRNA_H-elongata_contig71633.14834.1|Name=mRNA_H-elongata_contig71633.14834.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2695bp|location=Sequence derived from alignment at H-elongata_contig71633:436..3130- (Himanthalia elongata Himel1 dioecious)
AGCTACTACCAGGCACGACAGACCGCGTCGACCACGGTGAACCTGACCGC
AACCGCGTACTACCTGGCGGGAAAGACGTACAACTCGTTAGAGACGCGTT
ACGTGTGGCCGGCCCCCTACGATCTCGACGAGGAAGAGCGTCAGGTTGTA
AATGACGTCCATTTTTTGGTTGAATCGTTGCTCAGGGTATACCACGATGA
TTATACAAGCTATGATATTGATATTGTTGGCGACCTAAGCCACTATCAGG
GTTGTCTCCACAGAGCGCGCCTCTAGGCACCCTTATTTCCGGTTTATAGT
CGCCGCACCTTGCTTGTCCTCTCTTCATCCCACCCCCCGCCCCGCCCCTC
TCCTACCTCGGCGGCTATCGCGGCGCGGAATCTGTAACCTAAGAGTCGAC
ACACCCGCGACCGCAGTAATTGAAGGTCTCTCTCTCTCTTTCTCTCTCTC
TCTCGCGTGCGCGCGCACTAATCCAGGGCGCCCCACACTATTGCGATAGT
CCTACGACATGTTTTACTCGGTAACGGTACTGTTTTATCAGTGGACGGTT
TCGCAACACGTTTTGATAGAAACGATGCGCGATGATGACTGTGGACAAGG
GGCTGAATTCTTAACAATCCAGTGATATTTTCCGTCGCTTGGTATCGGAT
ACACTCGCTCCCGCTGCCCAGAACACACAATCAACAATACTTACATACTC
ACTCACAGGCGCTGGAGACGGCGGCGAGAGAAGGTGGCGATGACTGCGAG
TCGGTTGAAGATTGTGTGGGCGGCATAATCGGGTGGATCGGGGGTGTCGT
GGGAGCGGATACGTGCGTTGGTGTCGAGGTGCCCTGCCCGGACATCGACG
CCACCAACACTCTCGTCGAGTACGAGGCGTCACAGATGGTGATTGAAATC
TAGGCGGCTTTGTTTGGGTGCATGCGGTTTGTAAAAGGCGTCAGACATAA
CTGTTTGATGTCACGTAGGAAAACGCGAAGCCACCTGGTTGTCGTAGATA
GAAGGAGCAGCCGAAAGCCTCGAGAGAGGATTTCTACGCGTTTACTAGGT
CGAATCGTGCTTGCGGACCAAGTCACCCAAGCCCAGTACACTCTAAGATC
CGCCCCCTTCTTTCCATTTTGACCTTGCCCCGAAGCGACGAGAGTAATTT
CTGGCCCTTTCCCGTTTGTCTATTCCCACAAGTCGATCGATCTTTTCGGC
AACTCGACCGCAATAGCGTATAACACGACCCTGGCGCAGACAGCCCTCGA
CCAAGCGACGGATGCGATCACCGAGCTCGTCAGGAGGATCAACTTCGCCA
GCTCCATCTATGTGATCTACCTCGCCTTCTTGGTGGTCGTAACGCCCCCG
TTCATCGTGTACGGGTGAAGAGACCGAATCGTGATATCTTCACATTTTTG
TCTTGGGATAAAGGATCGACGCTACTGCGTCTCTCCTGGTTCTGATGGCT
ATTGTAGCATGAAAGGGCGAGATTGAGCGGTTATGTGCAAGTTAATAAAT
ACACATACATACACGACCGATCCAAATATAAGTAGGGGAGGGGGCGTCAC
AAAAGTGTCGTAGATCTTGGGAGGGGAGGGTCAAATCCGTCCCCTTTCGA
GAATCCAATCCTCGTATCCCTTGTCGTTGCGCTTGATATGGGATACATGA
TTGCCGTATAAGTTACGATAGATACGTTTTGTCCCCGGAAGGAGACGAAT
TTTACCTGTCCCCTTGACAAATCGAGGGCGTTTGAGTAATTACCCTGCCC
CTATCGTTGGATTGGCCCTAAATACACACGGGAGGGAAGAAAAAGCTGGT
AAACATGCGCGCGGTCCGACTTGGCATGACCAGGCGAACAGCAAGGCAAC
TGATCTTCCCCCAGAGCACGCGCTTTACTAATGAAAATTCCTTTGGGGTG
GACTTGATGTGCTTTTCTTATTTTTTGCGGAAATAATTATAGACGAAAAA
CAACACAGAGTCCCGAAAGTAACTTATTAGAGGTTTATGCCCCTCCCCAC
CCCCTGTCCCCTCTCACTGCCAACCCTACCCCACATTTTTCAGGGCCAGG
TGGAAACACCGGGTCGTCGATTTACTGGCCAACGTCAACAAGCCTATGTG
GATCGCCCTGATCGTACTTGTCTGGTACGCCCAAGAGTTCTTCAAGAGTA
TTATCACTTCGAGTCTATACAGCGTACTCTGGGCAAATTTTCTCCGCGAC
CCCTGCTGGGCAGACCCAGACTTTCTGACGAACACATCCATGGTGATCAG
GTGGGGTAAATGAAGACGGAAGTTTAAAAACAAGAGCAGCACTGTTTTGC
GAAACGATTGCCAAGAGCCTTGGAGATGTACACACAAATAGCACAGGTGC
CGTCTCACGTTCCACATTCTACGCTATCGAAGGAAAGGGGAAAGAGAACC
GGAGGGGGTGGGTAGGATGATGCAGCACTCGAGTTTCCCCTGCAAAATAT
TTCTTACCGGATCAACATATGAATGAACGGCGGCGCGTTACTACCCCAGT
AATTCTTTGCCGGCATACTTAGGCCTAGTTTGTGCCGTTATGACGTTTGT
ATTGAGAGGTTCCGCCCGCCGCCGCCGTCCGCGCGTTGCCCCGTTCTTGT
CCCCCGGCACCTCCTCATATTCCAGTAACACATGCAAGGACATAACGTCC
GCACAAAACCTCTTCAACCAGGCTTCCGCTAACTATCGGTACTAC
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Coding sequence (CDS) from alignment at H-elongata_contig71633:436..3130-

>mRNA_H-elongata_contig71633.14834.1 ID=mRNA_H-elongata_contig71633.14834.1|Name=mRNA_H-elongata_contig71633.14834.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig71633:436..3130- (Himanthalia elongata Himel1 dioecious)
AGCTACTACCAGGCACGACAGACCGCGTCGACCACGGTGAACCTGACCGC
AACCGCGTACTACCTGGCGGGAAAGACGTACAACTCGTTAGAGACGCGTT
ACGTGTGGCCGGCCCCCTACGATCTCGACGAGGAAGAGCGTCAGAGCTAC
TACCAGGCACGACAGACCGCGTCGACCACGGTGAACCTGACCGCAACCGC
GTACTACCTGGCGGGAAAGACGTACAACTCGTTAGAGACGCGTTACGTGT
GGCCGGCCCCCTACGATCTCGACGAGGAAGAGCGTCAGGCGCTGGAGACG
GCGGCGAGAGAAGGTGGCGATGACTGCGAGTCGGTTGAAGATTGTGTGGG
CGGCATAATCGGGTGGATCGGGGGTGTCGTGGGAGCGGATACGTGCGTTG
GTGTCGAGGTGCCCTGCCCGGACATCGACGCCACCAACACTCTCGTCGAG
TACGAGGCGTCACAGATGGCGCTGGAGACGGCGGCGAGAGAAGGTGGCGA
TGACTGCGAGTCGGTTGAAGATTGTGTGGGCGGCATAATCGGGTGGATCG
GGGGTGTCGTGGGAGCGGATACGTGCGTTGGTGTCGAGGTGCCCTGCCCG
GACATCGACGCCACCAACACTCTCGTCGAGTACGAGGCGTCACAGATGTC
GATCGATCTTTTCGGCAACTCGACCGCAATAGCGTATAACACGACCCTGG
CGCAGACAGCCCTCGACCAAGCGACGGATGCGATCACCGAGCTCGTCAGG
AGGATCAACTTCGCCAGCTCCATCTATGTGATCTACCTCGCCTTCTTGGT
GGTCGTAACGCCCCCGTTCATCGTGTACGGTCGATCGATCTTTTCGGCAA
CTCGACCGCAATAGCGTATAACACGACCCTGGCGCAGACAGCCCTCGACC
AAGCGACGGATGCGATCACCGAGCTCGTCAGGAGGATCAACTTCGCCAGC
TCCATCTATGTGATCTACCTCGCCTTCTTGGTGGTCGTAACGCCCCCGTT
CATCGTGTACGGGGCCAGGTGGAAACACCGGGTCGTCGATTTACTGGCCA
ACGTCAACAAGCCTATGTGGATCGCCCTGATCGTACTTGTCTGGTACGCC
CAAGAGTTCTTCAAGAGTATTATCACTTCGAGTCTATACAGCGTACTCTG
GGCAAATTTTCTCCGCGACCCCTGCTGGGCAGACCCAGACTTTCTGACGA
ACACATCCATGGTGATCAGGGCCAGGTGGAAACACCGGGTCGTCGATTTA
CTGGCCAACGTCAACAAGCCTATGTGGATCGCCCTGATCGTACTTGTCTG
GTACGCCCAAGAGTTCTTCAAGAGTATTATCACTTCGAGTCTATACAGCG
TACTCTGGGCAAATTTTCTCCGCGACCCCTGCTGGGCAGACCCAGACTTT
CTGACGAACACATCCATGGTGATCAGTAACACATGCAAGGACATAACGTC
CGCACAAAACCTCTTCAACCAGGCTTCCGCTAACTATCGGTACTACTAAC
ACATGCAAGGACATAACGTCCGCACAAAACCTCTTCAACCAGGCTTCCGC
TAACTATCGGTACTAC
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