mRNA_H-elongata_contig71595.14833.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: D8LI22_ECTSI (Importin subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI22_ECTSI) HSP 1 Score: 163 bits (413), Expect = 1.920e-44 Identity = 95/189 (50.26%), Postives = 110/189 (58.20%), Query Frame = 1
Query: 1 CITNIASSWSLHAQSILGATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGAT-------------------RDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEALVDSEGQ 510
C+TNIASS+S H ++I+GAT D R +LRANG L+P+FRLLQ PP IEIARTAAW ISNLARGD+TPG PF++A P +A+LRG V + RDE LRVEAAWILAFLTAKE ET + LV GMV ALVEALVDS GQ
Sbjct: 124 CLTNIASSYSRHTRTIVGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDFRRMLRANGALLPMFRLLQNPPLIEIARTAAWAISNLARGDETPGEPFVQAAPTFVASLRGGVRFSAAAXXXXXXXXXXXXXXXXAPPFVPPRDEALRVEAAWILAFLTAKEEETVTELVRVGMVTALVEALVDSGGQ 312
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A835YTV7_9STRA (Importin subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV7_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.180e-25 Identity = 75/172 (43.60%), Postives = 95/172 (55.23%), Query Frame = 1
Query: 1 CITNIASSWSLHAQS-ILGATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPP-------TIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEAL 492
CI NI S HA S +L A P LI+ L AP+PAL E +LWALGNIAGD SR++L A G + + R+L + +A AAW + NLARG+ PF G A L ++L G G R E EAAW LAFLTA+E+ L+ G+VPALV+ L
Sbjct: 134 CIANIGSG-DRHATSHVLDAAPALIALLHAPSPALVEDALWALGNIAGDVQTSRDVLSAQGAVPAITRVLAAQTRHAATRSSAPLAAVAAWALGNLARGEGASALPF--GASGAFAPLV-ALLGVAPGAG-ERGENAAAEAAWALAFLTAREDACVEQLLGLGVVPALVDLL 300
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A484EJF7_BRELC (Importin subunit alpha n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EJF7_BRELC) HSP 1 Score: 107 bits (267), Expect = 5.290e-24 Identity = 57/157 (36.31%), Postives = 89/157 (56.69%), Query Frame = 1
Query: 1 CITNIASSWSLHAQSILGATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMV 471
C+TNIAS H + +L A P+L+ FL P+L E + W +GNIA D + R+ L A G + PL LL+ + + + W +SNLARG +T TPF++A G++ S+L +G + +E AW+L+FL+A+E T L+ G++
Sbjct: 140 CLTNIASGQYEHTKVVLPAVPRLLQFLETSTPSLAENAAWVIGNIAADCDEFRQHLIAAGAVKPLVALLRPLIDTTLTQKSVWALSNLARGVETSSTPFVDA--GIV-----SILLNPQTIGKAFSDAFMIEVAWLLSFLSAREEATLQLLLTHGLI 289
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A6P5G4V3_ANACO (Importin subunit alpha n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5G4V3_ANACO) HSP 1 Score: 106 bits (264), Expect = 1.250e-23 Identity = 60/166 (36.14%), Postives = 94/166 (56.63%), Query Frame = 1
Query: 4 ITNIASSWSLHAQSIL--GATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEALV 495
+TNIAS + H + ++ GA P + LS+P+ ++EQ++WALGN+AGDS+ R+L+ NG L+PL + L + + + R A WT+SN RG P E V + AL + ST DE + +A W L++L+ N+ ++ AG+ P LVE L+
Sbjct: 136 LTNIASGTAEHTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSTRCRDLVLGNGGLIPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPA---FEQVKPALPALARLIHST--------DEEVLTDACWALSYLSDGSNDKIQAVIEAGVCPRLVELLL 290
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A6V7NTN9_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NTN9_ANACO) HSP 1 Score: 106 bits (264), Expect = 1.710e-23 Identity = 60/166 (36.14%), Postives = 94/166 (56.63%), Query Frame = 1
Query: 4 ITNIASSWSLHAQSIL--GATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEALV 495
+TNIAS + H + ++ GA P + LS+P+ ++EQ++WALGN+AGDS+ R+L+ NG L+PL + L + + + R A WT+SN RG P E V + AL + ST DE + +A W L++L+ N+ ++ AG+ P LVE L+
Sbjct: 355 LTNIASGTAEHTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSTRCRDLVLGNGGLIPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPA---FEQVKPALPALARLIHST--------DEEVLTDACWALSYLSDGSNDKIQAVIEAGVCPRLVELLL 509
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A8J5W961_ZIZPA (IBB domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5W961_ZIZPA) HSP 1 Score: 103 bits (257), Expect = 1.480e-22 Identity = 59/165 (35.76%), Postives = 96/165 (58.18%), Query Frame = 1
Query: 4 ITNIASSWSLHAQSIL--GATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEAL 492
+TNIAS S + + ++ GA P + LS+P+ ++EQ++WALGN+AGDS+D R+L+ A+G L PL + L + + + R A WT+SN RG P E V ++AL+ + S +DE + +A W L++L+ N+ ++ +G+ P LVE L
Sbjct: 143 LTNIASGTSENTKVVVEYGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSTDCRDLVLASGGLFPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPN---FEQVKPALSALQRLIHS--------QDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELL 296
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A7N0TFF3_KALFE (Importin subunit alpha n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TFF3_KALFE) HSP 1 Score: 102 bits (255), Expect = 2.200e-22 Identity = 59/166 (35.54%), Postives = 92/166 (55.42%), Query Frame = 1
Query: 4 ITNIASSWSLHAQSI--LGATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEALV 495
+TN+AS S H + + LGA P + LS+ ++EQ++WALGNIAGDS + R+L+ A+G LVPL L + + R A WT+SN RG P TPF + P + + L+ DE + +A W L++L+ N+ ++ AG+ P ++E L+
Sbjct: 144 LTNVASGTSEHTRVVIELGAVPHFVQLLSSATDDVREQAVWALGNIAGDSPNCRDLVLASGALVPLLGQLNDRSKLSMLRNATWTLSNFCRGK--PPTPFEQVKPALPVLQQLIHLN---------DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRIIELLL 298
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A7S2RHN7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RHN7_9STRA) HSP 1 Score: 102 bits (254), Expect = 3.450e-22 Identity = 64/161 (39.75%), Postives = 84/161 (52.17%), Query Frame = 1
Query: 1 CITNIASSWSLHAQSILGATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQ-QPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPAL 480
CITNIAS + + L A PQLI L+ + +QEQS WALGN+AG+ RE L G+L PL L+ +++I R A W +SNL RG T PF EA V L + P+ VE W L+FL+AKE E + LV G++ L
Sbjct: 133 CITNIASGSAYETSTTLCAAPQLIRLLNCGHQKIQEQSFWALGNMAGEDQKPREELLKMGILAPLMYTLRLDSSSVDIKRVATWCLSNLVRGSATSAIPFFEAK--VHETLLNMITHDVSS-------PVLVEVVWCLSFLSAKEVECSMCLVDLGILEIL 284
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A6A5B620_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5B620_NAEFO) HSP 1 Score: 101 bits (251), Expect = 4.290e-22 Identity = 59/167 (35.33%), Postives = 90/167 (53.89%), Query Frame = 1
Query: 4 ITNIASSWSLHAQSIL--GATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLE-AVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEALV 495
+TNIAS S H ++++ A P I L +PN ++EQS+WALGNIAGDS+ R+ + GV+VPL ++ + P + I R A WT+SNL RG P + A+P + L S DE + +A W +++L+ N ++ +V LVE L+
Sbjct: 39 LTNIASGTSEHTETVIRSNAVPVFIQLLGSPNEDVREQSIWALGNIAGDSARCRDYVLQMGVMVPLLNIIAEQPKVTILRNATWTVSNLCRGKPIPEFSLVAPALPTLSTLLYNS------------DEEVLTDACWAISYLSDGPNHRIQAVIEHNVVRRLVELLL 193
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A0J7K908_LASNI (Importin subunit alpha-7 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K908_LASNI) HSP 1 Score: 98.2 bits (243), Expect = 5.260e-22 Identity = 59/166 (35.54%), Postives = 91/166 (54.82%), Query Frame = 1
Query: 4 ITNIASSWSLHAQSIL--GATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEALV 495
+TNIAS S + ++ GA P IS L + +QEQ++WALGNIAGDS + R+ + ANG+L PL ++L + + + R A W +SNL RG K P F + P + +L+ T D + +A W L++L+ N+ ++ AG+ LVE L+
Sbjct: 77 LTNIASGTSQQTRIVIDAGAVPTFISLLGSEYEDVQEQAVWALGNIAGDSPECRDHVLANGILTPLLQVLSKATRLSMTRNAVWALSNLCRG-KNPAPAFAKVAP--CLPVLAHLLNHT-------DYDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLI 232 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71595.14833.1 >prot_H-elongata_contig71595.14833.1 ID=prot_H-elongata_contig71595.14833.1|Name=mRNA_H-elongata_contig71595.14833.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp CITNIASSWSLHAQSILGATPQLISFLSAPNPALQEQSLWALGNIAGDSSback to top mRNA from alignment at H-elongata_contig71595:2385..3044+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71595.14833.1 ID=mRNA_H-elongata_contig71595.14833.1|Name=mRNA_H-elongata_contig71595.14833.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig71595:2385..3044+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71595:2385..3044+ >mRNA_H-elongata_contig71595.14833.1 ID=mRNA_H-elongata_contig71595.14833.1|Name=mRNA_H-elongata_contig71595.14833.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig71595:2385..3044+ (Himanthalia elongata Himel1 dioecious)back to top |