mRNA_H-elongata_contig71595.14833.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71595.14833.1
Unique NamemRNA_H-elongata_contig71595.14833.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: D8LI22_ECTSI (Importin subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI22_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.920e-44
Identity = 95/189 (50.26%), Postives = 110/189 (58.20%), Query Frame = 1
Query:    1 CITNIASSWSLHAQSILGATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGAT-------------------RDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEALVDSEGQ 510
            C+TNIASS+S H ++I+GAT                              D R +LRANG L+P+FRLLQ PP IEIARTAAW ISNLARGD+TPG PF++A P  +A+LRG V  +                          RDE LRVEAAWILAFLTAKE ET + LV  GMV ALVEALVDS GQ
Sbjct:  124 CLTNIASSYSRHTRTIVGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDFRRMLRANGALLPMFRLLQNPPLIEIARTAAWAISNLARGDETPGEPFVQAAPTFVASLRGGVRFSAAAXXXXXXXXXXXXXXXXAPPFVPPRDEALRVEAAWILAFLTAKEEETVTELVRVGMVTALVEALVDSGGQ 312          
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A835YTV7_9STRA (Importin subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.180e-25
Identity = 75/172 (43.60%), Postives = 95/172 (55.23%), Query Frame = 1
Query:    1 CITNIASSWSLHAQS-ILGATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPP-------TIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEAL 492
            CI NI S    HA S +L A P LI+ L AP+PAL E +LWALGNIAGD   SR++L A G +  + R+L           +  +A  AAW + NLARG+     PF     G  A L  ++L    G G  R E    EAAW LAFLTA+E+     L+  G+VPALV+ L
Sbjct:  134 CIANIGSG-DRHATSHVLDAAPALIALLHAPSPALVEDALWALGNIAGDVQTSRDVLSAQGAVPAITRVLAAQTRHAATRSSAPLAAVAAWALGNLARGEGASALPF--GASGAFAPLV-ALLGVAPGAG-ERGENAAAEAAWALAFLTAREDACVEQLLGLGVVPALVDLL 300          
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A484EJF7_BRELC (Importin subunit alpha n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EJF7_BRELC)

HSP 1 Score: 107 bits (267), Expect = 5.290e-24
Identity = 57/157 (36.31%), Postives = 89/157 (56.69%), Query Frame = 1
Query:    1 CITNIASSWSLHAQSILGATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMV 471
            C+TNIAS    H + +L A P+L+ FL    P+L E + W +GNIA D  + R+ L A G + PL  LL+      + + + W +SNLARG +T  TPF++A  G++     S+L     +G    +   +E AW+L+FL+A+E  T   L+  G++
Sbjct:  140 CLTNIASGQYEHTKVVLPAVPRLLQFLETSTPSLAENAAWVIGNIAADCDEFRQHLIAAGAVKPLVALLRPLIDTTLTQKSVWALSNLARGVETSSTPFVDA--GIV-----SILLNPQTIGKAFSDAFMIEVAWLLSFLSAREEATLQLLLTHGLI 289          
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A6P5G4V3_ANACO (Importin subunit alpha n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5G4V3_ANACO)

HSP 1 Score: 106 bits (264), Expect = 1.250e-23
Identity = 60/166 (36.14%), Postives = 94/166 (56.63%), Query Frame = 1
Query:    4 ITNIASSWSLHAQSIL--GATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEALV 495
            +TNIAS  + H + ++  GA P  +  LS+P+  ++EQ++WALGN+AGDS+  R+L+  NG L+PL + L +   + + R A WT+SN  RG   P     E V   + AL   + ST        DE +  +A W L++L+   N+    ++ AG+ P LVE L+
Sbjct:  136 LTNIASGTAEHTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSTRCRDLVLGNGGLIPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPA---FEQVKPALPALARLIHST--------DEEVLTDACWALSYLSDGSNDKIQAVIEAGVCPRLVELLL 290          
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A6V7NTN9_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NTN9_ANACO)

HSP 1 Score: 106 bits (264), Expect = 1.710e-23
Identity = 60/166 (36.14%), Postives = 94/166 (56.63%), Query Frame = 1
Query:    4 ITNIASSWSLHAQSIL--GATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEALV 495
            +TNIAS  + H + ++  GA P  +  LS+P+  ++EQ++WALGN+AGDS+  R+L+  NG L+PL + L +   + + R A WT+SN  RG   P     E V   + AL   + ST        DE +  +A W L++L+   N+    ++ AG+ P LVE L+
Sbjct:  355 LTNIASGTAEHTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSTRCRDLVLGNGGLIPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPA---FEQVKPALPALARLIHST--------DEEVLTDACWALSYLSDGSNDKIQAVIEAGVCPRLVELLL 509          
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A8J5W961_ZIZPA (IBB domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5W961_ZIZPA)

HSP 1 Score: 103 bits (257), Expect = 1.480e-22
Identity = 59/165 (35.76%), Postives = 96/165 (58.18%), Query Frame = 1
Query:    4 ITNIASSWSLHAQSIL--GATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEAL 492
            +TNIAS  S + + ++  GA P  +  LS+P+  ++EQ++WALGN+AGDS+D R+L+ A+G L PL + L +   + + R A WT+SN  RG   P     E V   ++AL+  + S        +DE +  +A W L++L+   N+    ++ +G+ P LVE L
Sbjct:  143 LTNIASGTSENTKVVVEYGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSTDCRDLVLASGGLFPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPN---FEQVKPALSALQRLIHS--------QDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELL 296          
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A7N0TFF3_KALFE (Importin subunit alpha n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TFF3_KALFE)

HSP 1 Score: 102 bits (255), Expect = 2.200e-22
Identity = 59/166 (35.54%), Postives = 92/166 (55.42%), Query Frame = 1
Query:    4 ITNIASSWSLHAQSI--LGATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEALV 495
            +TN+AS  S H + +  LGA P  +  LS+    ++EQ++WALGNIAGDS + R+L+ A+G LVPL   L     + + R A WT+SN  RG   P TPF +  P +    +   L+         DE +  +A W L++L+   N+    ++ AG+ P ++E L+
Sbjct:  144 LTNVASGTSEHTRVVIELGAVPHFVQLLSSATDDVREQAVWALGNIAGDSPNCRDLVLASGALVPLLGQLNDRSKLSMLRNATWTLSNFCRGK--PPTPFEQVKPALPVLQQLIHLN---------DEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRIIELLL 298          
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A7S2RHN7_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RHN7_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.450e-22
Identity = 64/161 (39.75%), Postives = 84/161 (52.17%), Query Frame = 1
Query:    1 CITNIASSWSLHAQSILGATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQ-QPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPAL 480
            CITNIAS  +    + L A PQLI  L+  +  +QEQS WALGN+AG+    RE L   G+L PL   L+    +++I R A W +SNL RG  T   PF EA   V   L   +             P+ VE  W L+FL+AKE E +  LV  G++  L
Sbjct:  133 CITNIASGSAYETSTTLCAAPQLIRLLNCGHQKIQEQSFWALGNMAGEDQKPREELLKMGILAPLMYTLRLDSSSVDIKRVATWCLSNLVRGSATSAIPFFEAK--VHETLLNMITHDVSS-------PVLVEVVWCLSFLSAKEVECSMCLVDLGILEIL 284          
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A6A5B620_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5B620_NAEFO)

HSP 1 Score: 101 bits (251), Expect = 4.290e-22
Identity = 59/167 (35.33%), Postives = 90/167 (53.89%), Query Frame = 1
Query:    4 ITNIASSWSLHAQSIL--GATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLE-AVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEALV 495
            +TNIAS  S H ++++   A P  I  L +PN  ++EQS+WALGNIAGDS+  R+ +   GV+VPL  ++ + P + I R A WT+SNL RG   P    +  A+P +   L  S            DE +  +A W +++L+   N     ++   +V  LVE L+
Sbjct:   39 LTNIASGTSEHTETVIRSNAVPVFIQLLGSPNEDVREQSIWALGNIAGDSARCRDYVLQMGVMVPLLNIIAEQPKVTILRNATWTVSNLCRGKPIPEFSLVAPALPTLSTLLYNS------------DEEVLTDACWAISYLSDGPNHRIQAVIEHNVVRRLVELLL 193          
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Match: A0A0J7K908_LASNI (Importin subunit alpha-7 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K908_LASNI)

HSP 1 Score: 98.2 bits (243), Expect = 5.260e-22
Identity = 59/166 (35.54%), Postives = 91/166 (54.82%), Query Frame = 1
Query:    4 ITNIASSWSLHAQSIL--GATPQLISFLSAPNPALQEQSLWALGNIAGDSSDSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFLEAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETASTLVAAGMVPALVEALV 495
            +TNIAS  S   + ++  GA P  IS L +    +QEQ++WALGNIAGDS + R+ + ANG+L PL ++L +   + + R A W +SNL RG K P   F +  P     +   +L+ T       D  +  +A W L++L+   N+    ++ AG+   LVE L+
Sbjct:   77 LTNIASGTSQQTRIVIDAGAVPTFISLLGSEYEDVQEQAVWALGNIAGDSPECRDHVLANGILTPLLQVLSKATRLSMTRNAVWALSNLCRG-KNPAPAFAKVAP--CLPVLAHLLNHT-------DYDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLI 232          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71595.14833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI22_ECTSI1.920e-4450.26Importin subunit alpha n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835YTV7_9STRA1.180e-2543.60Importin subunit alpha n=1 Tax=Tribonema minus Tax... [more]
A0A484EJF7_BRELC5.290e-2436.31Importin subunit alpha n=1 Tax=Bremia lactucae Tax... [more]
A0A6P5G4V3_ANACO1.250e-2336.14Importin subunit alpha n=2 Tax=Ananas comosus TaxI... [more]
A0A6V7NTN9_ANACO1.710e-2336.14Uncharacterized protein n=1 Tax=Ananas comosus var... [more]
A0A8J5W961_ZIZPA1.480e-2235.76IBB domain-containing protein n=1 Tax=Zizania palu... [more]
A0A7N0TFF3_KALFE2.200e-2235.54Importin subunit alpha n=2 Tax=Kalanchoe fedtschen... [more]
A0A7S2RHN7_9STRA3.450e-2239.75Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A6A5B620_NAEFO4.290e-2235.33Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
A0A0J7K908_LASNI5.260e-2235.54Importin subunit alpha-7 n=1 Tax=Lasius niger TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71595contigH-elongata_contig71595:2385..3044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue2.6e-38
Seed eggNOG ortholog2880.D8LI22
EggNOG free text desc.nuclear import signal receptor activity
EggNOG OGsCOG5064@1,KOG0166@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size510
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.3571281-CDS-H-elongata_contig71595:2384..26031622931117.3571281-CDS-H-elongata_contig71595:2384..2603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71595 2385..2603 +
1691679705.2990317-CDS-H-elongata_contig71595:2384..26031691679705.2990317-CDS-H-elongata_contig71595:2384..2603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71595 2385..2603 +
1622931117.3752046-CDS-H-elongata_contig71595:2753..30441622931117.3752046-CDS-H-elongata_contig71595:2753..3044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71595 2754..3044 +
1691679705.3107274-CDS-H-elongata_contig71595:2753..30441691679705.3107274-CDS-H-elongata_contig71595:2753..3044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71595 2754..3044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71595.14833.1prot_H-elongata_contig71595.14833.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71595 2385..3044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71595.14833.1

>prot_H-elongata_contig71595.14833.1 ID=prot_H-elongata_contig71595.14833.1|Name=mRNA_H-elongata_contig71595.14833.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
CITNIASSWSLHAQSILGATPQLISFLSAPNPALQEQSLWALGNIAGDSS
DSRELLRANGVLVPLFRLLQQPPTIEIARTAAWTISNLARGDKTPGTPFL
EAVPGVIAALRGSVLSTTGGVGATRDEPLRVEAAWILAFLTAKENETAST
LVAAGMVPALVEALVDSEGQ
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mRNA from alignment at H-elongata_contig71595:2385..3044+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71595.14833.1 ID=mRNA_H-elongata_contig71595.14833.1|Name=mRNA_H-elongata_contig71595.14833.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig71595:2385..3044+ (Himanthalia elongata Himel1 dioecious)
TGTATCACGAACATCGCAAGTAGCTGGAGCCTGCATGCCCAGTCGATACT CGGGGCGACGCCTCAGCTCATCAGCTTCCTGTCAGCTCCCAACCCCGCGC TCCAGGAGCAGTCACTCTGGGCGCTCGGCAATATAGCCGGGGACAGCAGC GATTCCAGGGAGCTGTTGCGCGCGAACGGAGTCCTCGTTCCGCTTTTTCG TCTGCTGCAGCAACCCCCGGTGAGCGCGCCAGCACCCGTCTGTATTTATT TTTGGTCGGGAGGCTTGAGGTTACGAAGACCGCTTACAATACTTACCCCC CGCCCTCCCGTCTCGCTTCATTTTCCATCCGACCACACCTTAACCCCATC TCAATCCCGCCCACCCAAGACGATCGAAATCGCTCGGACGGCTGCGTGGA CGATCTCGAACCTCGCCCGCGGGGACAAAACGCCGGGCACGCCCTTCCTT GAAGCTGTCCCCGGCGTGATTGCCGCGTTGAGGGGCAGCGTCCTCAGCAC GACCGGCGGCGTCGGCGCGACGCGCGACGAACCGCTTCGCGTGGAGGCCG CGTGGATCCTTGCGTTTCTGACCGCTAAGGAGAACGAAACGGCGTCGACG CTGGTTGCAGCGGGTATGGTGCCCGCTCTCGTGGAGGCGTTGGTGGACAG CGAAGGGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig71595:2385..3044+

>mRNA_H-elongata_contig71595.14833.1 ID=mRNA_H-elongata_contig71595.14833.1|Name=mRNA_H-elongata_contig71595.14833.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig71595:2385..3044+ (Himanthalia elongata Himel1 dioecious)
TGTATCACGAACATCGCAAGTAGCTGGAGCCTGCATGCCCAGTCGATACT
CGGGGCGACGCCTCAGCTCATCAGCTTCCTGTCAGCTCCCAACCCCGCGC
TCCAGGAGCAGTCACTCTGGGCGCTCGGCAATATAGCCGGGGACAGCAGC
GATTCCAGGGAGCTGTTGCGCGCGAACGGAGTCCTCGTTCCGCTTTTTCG
TCTGCTGCAGCAACCCCCGTGTATCACGAACATCGCAAGTAGCTGGAGCC
TGCATGCCCAGTCGATACTCGGGGCGACGCCTCAGCTCATCAGCTTCCTG
TCAGCTCCCAACCCCGCGCTCCAGGAGCAGTCACTCTGGGCGCTCGGCAA
TATAGCCGGGGACAGCAGCGATTCCAGGGAGCTGTTGCGCGCGAACGGAG
TCCTCGTTCCGCTTTTTCGTCTGCTGCAGCAACCCCCGACGATCGAAATC
GCTCGGACGGCTGCGTGGACGATCTCGAACCTCGCCCGCGGGGACAAAAC
GCCGGGCACGCCCTTCCTTGAAGCTGTCCCCGGCGTGATTGCCGCGTTGA
GGGGCAGCGTCCTCAGCACGACCGGCGGCGTCGGCGCGACGCGCGACGAA
CCGCTTCGCGTGGAGGCCGCGTGGATCCTTGCGTTTCTGACCGCTAAGGA
GAACGAAACGGCGTCGACGCTGGTTGCAGCGGGTATGGTGCCCGCTCTCG
TGGAGGCGTTGGTGGACAGCGAAGGGCAGACGATCGAAATCGCTCGGACG
GCTGCGTGGACGATCTCGAACCTCGCCCGCGGGGACAAAACGCCGGGCAC
GCCCTTCCTTGAAGCTGTCCCCGGCGTGATTGCCGCGTTGAGGGGCAGCG
TCCTCAGCACGACCGGCGGCGTCGGCGCGACGCGCGACGAACCGCTTCGC
GTGGAGGCCGCGTGGATCCTTGCGTTTCTGACCGCTAAGGAGAACGAAAC
GGCGTCGACGCTGGTTGCAGCGGGTATGGTGCCCGCTCTCGTGGAGGCGT
TGGTGGACAGCGAAGGGCAG
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