mRNA_H-elongata_contig7159.14830.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7159.14830.1
Unique NamemRNA_H-elongata_contig7159.14830.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7159.14830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7159contigH-elongata_contig7159:3768..4357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size590
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7159.14830.1prot_H-elongata_contig7159.14830.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7159 3882..4280 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.1659212-UTR-H-elongata_contig7159:3767..38811622931117.1659212-UTR-H-elongata_contig7159:3767..3881Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7159 3768..3881 -
1691679705.2270617-UTR-H-elongata_contig7159:3767..38811691679705.2270617-UTR-H-elongata_contig7159:3767..3881Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7159 3768..3881 -
1622931117.1991231-UTR-H-elongata_contig7159:4280..43571622931117.1991231-UTR-H-elongata_contig7159:4280..4357Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7159 4281..4357 -
1691679705.2565367-UTR-H-elongata_contig7159:4280..43571691679705.2565367-UTR-H-elongata_contig7159:4280..4357Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7159 4281..4357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931117.1812441-CDS-H-elongata_contig7159:3881..42801622931117.1812441-CDS-H-elongata_contig7159:3881..4280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7159 3882..4280 -
1691679705.2445703-CDS-H-elongata_contig7159:3881..42801691679705.2445703-CDS-H-elongata_contig7159:3881..4280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7159 3882..4280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7159.14830.1

>prot_H-elongata_contig7159.14830.1 ID=prot_H-elongata_contig7159.14830.1|Name=mRNA_H-elongata_contig7159.14830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MPSKQHENCSPGGQLLFLDCRCYVGALQQRRGKKVEGNRAKVAFTRRVWL
LRLFVYKLKPENHPEQAQCIHSRMKTSDKLRQNKIRNKYMVSQSRPPLLL
QYTKIEKTACMADCCSSTPKCKRAGQNMCPYT*
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mRNA from alignment at H-elongata_contig7159:3768..4357-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7159.14830.1 ID=mRNA_H-elongata_contig7159.14830.1|Name=mRNA_H-elongata_contig7159.14830.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=590bp|location=Sequence derived from alignment at H-elongata_contig7159:3768..4357- (Himanthalia elongata Himel1 dioecious)
GAGCAGCATCTCGTTCATTGCAACTCGCTATATTTTTTATTATAACATAT
GAACTCATTAGAACCCTCCGAACATCCATGCCTTCTAAGCAACATGAGAA
CTGTAGTCCAGGGGGTCAACTCCTCTTCCTCGACTGTAGATGTTATGTTG
GCGCACTTCAGCAAAGGCGTGGGAAGAAGGTCGAGGGAAACAGGGCGAAA
GTAGCTTTTACTAGACGTGTGTGGTTGCTACGGCTTTTTGTGTATAAATT
AAAGCCAGAAAACCACCCCGAGCAAGCACAGTGCATTCACAGCAGGATGA
AAACGAGTGATAAATTGCGACAAAACAAAATAAGAAATAAATACATGGTA
TCGCAGTCACGACCGCCACTGCTTCTACAGTACACCAAAATAGAAAAAAC
GGCATGCATGGCAGATTGTTGTTCCAGCACACCTAAATGCAAAAGAGCGG
GGCAGAACATGTGCCCCTATACGTAACATTGCCACTTCACTTGCACATTG
AAGCAAAAAACACCAACGTTTTCAGAAGCACGAAATAAACGATAAAAGGA
ACATATCCAAATTACCCCGTGCGGTACCGGGTAGTGAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig7159:3768..4357-

>mRNA_H-elongata_contig7159.14830.1 ID=mRNA_H-elongata_contig7159.14830.1|Name=mRNA_H-elongata_contig7159.14830.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig7159:3768..4357- (Himanthalia elongata Himel1 dioecious)
ATGCCTTCTAAGCAACATGAGAACTGTAGTCCAGGGGGTCAACTCCTCTT
CCTCGACTGTAGATGTTATGTTGGCGCACTTCAGCAAAGGCGTGGGAAGA
AGGTCGAGGGAAACAGGGCGAAAGTAGCTTTTACTAGACGTGTGTGGTTG
CTACGGCTTTTTGTGTATAAATTAAAGCCAGAAAACCACCCCGAGCAAGC
ACAGTGCATTCACAGCAGGATGAAAACGAGTGATAAATTGCGACAAAACA
AAATAAGAAATAAATACATGGTATCGCAGTCACGACCGCCACTGCTTCTA
CAGTACACCAAAATAGAAAAAACGGCATGCATGGCAGATTGTTGTTCCAG
CACACCTAAATGCAAAAGAGCGGGGCAGAACATGTGCCCCTATACGTAAA
TGCCTTCTAAGCAACATGAGAACTGTAGTCCAGGGGGTCAACTCCTCTTC
CTCGACTGTAGATGTTATGTTGGCGCACTTCAGCAAAGGCGTGGGAAGAA
GGTCGAGGGAAACAGGGCGAAAGTAGCTTTTACTAGACGTGTGTGGTTGC
TACGGCTTTTTGTGTATAAATTAAAGCCAGAAAACCACCCCGAGCAAGCA
CAGTGCATTCACAGCAGGATGAAAACGAGTGATAAATTGCGACAAAACAA
AATAAGAAATAAATACATGGTATCGCAGTCACGACCGCCACTGCTTCTAC
AGTACACCAAAATAGAAAAAACGGCATGCATGGCAGATTGTTGTTCCAGC
ACACCTAAATGCAAAAGAGCGGGGCAGAACATGTGCCCCTATACGTAA
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