mRNA_H-elongata_contig7157.14827.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.760e-39 Identity = 96/264 (36.36%), Postives = 149/264 (56.44%), Query Frame = 1
Query: 7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTH-KKAVMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
Q+ YGL A R WN+ + ++GFE A DP V + + E E +V ++VD+++ + +A + A + +KF++KD+G AR+ +G I N + R L I Q+ Y ES+++TF + A P GV L+KAD+P+ ++K KM+ PYR VG+ +M+ A TRPD + V ++RF ENP H + ++YLL T D I Y GQ G ++AY +D+D+ + D RR V +LML + W S Q+ A
Sbjct: 253 QSLYGLKHASRVWNDTIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSVVGS-LMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAY-SDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 511
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA) HSP 1 Score: 150 bits (378), Expect = 3.230e-39 Identity = 96/264 (36.36%), Postives = 149/264 (56.44%), Query Frame = 1
Query: 7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
Q+ YGL QA R WN + ++GFE A DP V + + E E +V ++VDD++ + +A + A + +KF++KDMG AR+ +G I + + R L I Q+ Y ES+++ F + A P GV L+KAD+P+ ++K KM+ PYR VG+ +M+ A TRPD + V ++RF ENP H A + +++YLL T D I Y G G ++AY +D+D+ + D RR V +LM+ + W S Q+ A
Sbjct: 28 QSLYGLKQASRVWNETIDKHIKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQIEEDKAKMKSKPYRSLVGS-LMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAY-SDADWAGNRDDRRSVSGMLLMMCGAPVVWRSTFQKTVA 286
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA) HSP 1 Score: 150 bits (378), Expect = 5.750e-39 Identity = 95/264 (35.98%), Postives = 149/264 (56.44%), Query Frame = 1
Query: 7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASN--IPTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
Q+ YGL QA R WN + ++GFE A DP V + + E E +V ++VDD++ + +A + A + +KF++KD+G AR+ +G I + + R L I Q+ Y ES+++ F + A P GV L+KAD+P+ ++K KM+ PYR VG+ +M+ A TRPD + V ++RF ENP H A + +++YLL T D I Y G G ++AY +D+++ + D RR V +LML + W S Q+ A
Sbjct: 59 QSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGS-LMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAY-SDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 317
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3HKQ8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HKQ8_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.100e-38 Identity = 95/264 (35.98%), Postives = 147/264 (55.68%), Query Frame = 1
Query: 7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
Q+ YGL QA R WN + ++GFE A DP V + + E E +V ++VDD++ + + + A + +KF++KD+G AR+ +G I + + R L I Q+ Y ES+++ F + A P GV L+KAD+P+ + K KM+ PYR VG+ +M+ A TRPD + V ++RF ENP H A + +++YLL T D I Y G G ++AY +D+D+ + D RR V +LML + W S Q+ A
Sbjct: 59 QSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEVKAKMKSKPYRSLVGS-LMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAY-SDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 317
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA) HSP 1 Score: 147 bits (370), Expect = 2.980e-38 Identity = 96/264 (36.36%), Postives = 148/264 (56.06%), Query Frame = 1
Query: 7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVK--KASNIPTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
Q+ YGL QA R WN + ++GFE A DP V + + E E +V ++VDD++ + +A + A + +KF++KDMG AR+ + I + + R L I Q+ Y ES+++ F + K P GV L+KAD+P+ ++K KM+ PYR VG+ +M+ A TRPD + V ++RF ENP H A + +++YLL T D I Y G G ++AY +D+D+ + D RR V +LML + W S Q+ A
Sbjct: 4 QSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEDECIVRLYVDDMLIASRQKAVIASEKAGIAEKFRIKDMGRARFILSIEIDYDIERRTLGISQKAYTESIIKKFGQENTKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGS-LMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAY-SDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 262
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 152 bits (383), Expect = 4.100e-38 Identity = 97/264 (36.74%), Postives = 149/264 (56.44%), Query Frame = 1
Query: 7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
Q+ YGL QA R WN + ++GFE A DP V + + E E +V ++VDD++ + A + A + +KF++KDMG AR+ +G I + + R L I Q+ Y ES+++ F + A P GV L+KAD+P+ ++K KM+ PYR VG+ +M+ A TRPD + V ++RF ENP H A + +++YLL T D I Y G G ++AY +D+D+ + D RR V +LML + + W S Q+ A
Sbjct: 551 QSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGS-LMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAY-SDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVA 809
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3V7V5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V7V5_9STRA) HSP 1 Score: 145 bits (366), Expect = 4.620e-38 Identity = 95/264 (35.98%), Postives = 148/264 (56.06%), Query Frame = 1
Query: 7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
Q+ YGL QA R WN + ++GFE A DP V + D+ E +V ++VDD++ + +A + A + +KF++KD+G AR+ +G I + + R L I Q+ Y ES+++ F + A P GV L+KAD+P+ E+ KM+ PYR VG+ +M+ A TRPD + V ++RF ENP H A + +++YLL T D I Y G G ++AY +++D+ + D RR V +LML + W S Q+ A
Sbjct: 59 QSLYGLKQASRVWNEMINKHLKSMGFEPADADPCVYTRGEGDD-ECIVCLYVDDMLIASRQKAVIASVKARIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGRENAKPCLTPLEPGV-NLTKADEPQT--EEAKMKSKPYRSLVGS-LMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAY-SNADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 315
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA) HSP 1 Score: 150 bits (380), Expect = 4.630e-38 Identity = 96/264 (36.36%), Postives = 149/264 (56.44%), Query Frame = 1
Query: 7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
Q+ YGL QA R WN + ++GFE A DP V + + E E +V ++VDD++ + +A + A + +KF++KDMG AR+ +G I + + R L I Q+ Y ES+++ F + A P GV L+KAD+P+ ++K KM+ PYR VG+ +M+ + TRPD + V ++RF ENP H A + +++YLL T D I Y G G ++AY +D+D+ + D RR V +LML + W S Q+ A
Sbjct: 285 QSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGS-LMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAY-SDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVA 543
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6G0R8U1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0R8U1_9STRA) HSP 1 Score: 150 bits (378), Expect = 8.780e-38 Identity = 95/264 (35.98%), Postives = 148/264 (56.06%), Query Frame = 1
Query: 7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
Q+ YGL QA R WN + ++GFE A DP V + + E E +V ++VDD++ + + + A + +KF++KD+G AR+ +G I + + R L I Q+ Y ES+++ + + A P GV L+KAD+P+ ++K KM+ PYR VG +M+ A TRPD + V ++RF ENP H A + +++YLL T D RI Y G G ++AY +D+D+ + D RR V +LML + W S Q+ A
Sbjct: 302 QSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIVSRQKTVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKYGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGN-LMYLACGTRPDVSVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVRIVYDGL-LGTQLEAY-SDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 560
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 149 bits (376), Expect = 9.830e-38 Identity = 96/264 (36.36%), Postives = 147/264 (55.68%), Query Frame = 1
Query: 7 QAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVVIHVDDIIYHVKDQATMDRFSAELRQKFKLKDMGDARYYMGCHITRNRKARELKIDQQLYVESVVETFDVKKASNI--PTTSGVPTLSKADKPRNPKEKGKMRKFPYREAVGAFIMWRATMTRPDTASEVRAVARFCENPEPTHKKA-VMIMQYLLHTNDWRITYGGQGCGLCMKAYYTDSDFGASVDTRRLVEDAVLMLAKEVISWYSRVQEVTA 789
Q+ YGL QA R WN + + GFE A DP V + + E E +V ++VDD++ + +A + A + +KF++KD+G AR+ +G I + + R L I Q+ Y ES+++ F + A P GV L+KAD+P+ ++K KM+ PYR VG+ +M+ A TRPD + V ++RF ENP H A + +++YLL T D I Y G G +AY +D+D+ + D RR V +LML + W S Q+ A
Sbjct: 220 QSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGS-LMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAY-SDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVA 478 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7157.14827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7157.14827.1 >prot_H-elongata_contig7157.14827.1 ID=prot_H-elongata_contig7157.14827.1|Name=mRNA_H-elongata_contig7157.14827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=263bp VEQAFYGLVQAGRCWNNKFCDEMMAIGFEQAKTDPSVIRKVVDDEAEMVVback to top mRNA from alignment at H-elongata_contig7157:6080..6868- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7157.14827.1 ID=mRNA_H-elongata_contig7157.14827.1|Name=mRNA_H-elongata_contig7157.14827.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at H-elongata_contig7157:6080..6868- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7157:6080..6868- >mRNA_H-elongata_contig7157.14827.1 ID=mRNA_H-elongata_contig7157.14827.1|Name=mRNA_H-elongata_contig7157.14827.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at H-elongata_contig7157:6080..6868- (Himanthalia elongata Himel1 dioecious)back to top |