mRNA_H-elongata_contig71565.14826.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71565.14826.1
Unique NamemRNA_H-elongata_contig71565.14826.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A6H5KQK5_9PHAE (PSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQK5_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 9.450e-104
Identity = 209/258 (81.01%), Postives = 225/258 (87.21%), Query Frame = 1
Query:    1 KVEHVVDNEAVLENAEMDQAYVQEFRQIFERFAKIADEASGAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEE---GVGPRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
            +VE+V DN +VL+ AEMD A ++EF+QIFER                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     G GPRLSRK RKLK+RLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPF+LP+FIAMTGIDK+RAA+EEADS KKAKQKQRERV PKMGKIDIDYQVLHDAFFK+QTKPPLT PGDLYYEGKEFEA+N+EHKPG IS +LRE
Sbjct:  123 QVEYVADNTSVLDGAEMDAASLEEFKQIFERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGPRLSRKARKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSQKKAKQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISSDLRE 380          
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A836CFT2_9STRA (Proline-rich spliceosome-associated family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT2_9STRA)

HSP 1 Score: 269 bits (687), Expect = 2.190e-83
Identity = 185/255 (72.55%), Postives = 210/255 (82.35%), Query Frame = 1
Query:    1 KVEHVVDNEA-VLENAEMDQAYVQEFRQIFERFAKIADEASGAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVGPRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELR 762
            +VE+V  + + ++E + MD    +EF++IFERF+KI      A  D AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XX      +LSRK RKLK+RL+VAELKQLVQRPDVVEAHDVTAADPRMLV LKSYRNTVPVPRHWC KRKYLQGKRGIEK PF+LP+FIAMTGI K+R  V+EAD  K+AKQ+ RERVQPKMGKIDIDYQVLHDAFFK+QTKP +T  GDLY+EGKEFE R +E KPG +S ELR
Sbjct:   55 EVEYVAPSASDLVEGSGMDDEVAKEFKEIFERFSKIGR----AEEDIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEXXXXXGAGKLSRKARKLKSRLTVAELKQLVQRPDVVEAHDVTAADPRMLVHLKSYRNTVPVPRHWCHKRKYLQGKRGIEKKPFELPEFIAMTGISKLRDNVDEADG-KRAKQRSRERVQPKMGKIDIDYQVLHDAFFKWQTKPHMTSVGDLYFEGKEFEVRLREKKPGQLSEELR 304          
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A7S3XPZ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPZ4_HETAK)

HSP 1 Score: 263 bits (673), Expect = 9.860e-83
Identity = 132/169 (78.11%), Postives = 148/169 (87.57%), Query Frame = 1
Query:  259 PRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
            PRLSRKQRK  +RLSVAELKQLVQRP+VVEAHDVTAADPR+LV LK+YR TVPVPRHWC KRKYLQGKRG+EK P+QLPDFIA TGI K+R A EE D++K+AKQKQRERVQPKMGKIDIDYQVLHDAFFK+QTKP +T  G+LYYEGKEFE R ++  PG +S  LRE
Sbjct:   17 PRLSRKQRKKLHRLSVAELKQLVQRPEVVEAHDVTAADPRLLVHLKAYRGTVPVPRHWCHKRKYLQGKRGVEKQPWQLPDFIAQTGISKLRGAQEELDAMKRAKQKQRERVQPKMGKIDIDYQVLHDAFFKWQTKPRMTTHGELYYEGKEFEVRLRDKMPGALSQPLRE 185          
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A7S2W121_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W121_9STRA)

HSP 1 Score: 260 bits (665), Expect = 1.600e-80
Identity = 151/237 (63.71%), Postives = 176/237 (74.26%), Query Frame = 1
Query:   52 DQAYVQEFRQIFERFAKIADEASGAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVGPRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELR 762
            D   + +F+ IFE+FA  A+E +G +A AA        XXXXXXXXX                 EEG   +LSRK RK ++RLSVAELKQLV RPDVVEAHD+TAADPR+LVFLK YRNTVPVPRHWC KRKYLQGKRGIEK PFQLP+FIA TGI+K+R A+ E ++L  AKQK R RVQPKMGKIDIDYQVLHDAFFKYQ KP LT  GD+YYEGKEFE + +E KPG ++ +L+
Sbjct:   52 DDPLMSQFKGIFEKFAS-AEELTGESAVAAANGAEAEEXXXXXXXXXTADAAGQDAE-------EEGGEVKLSRKARKKQSRLSVAELKQLVGRPDVVEAHDITAADPRLLVFLKGYRNTVPVPRHWCHKRKYLQGKRGIEKPPFQLPEFIASTGIEKIRTAIMEQEALASAKQKGRGRVQPKMGKIDIDYQVLHDAFFKYQNKPSLTLHGDIYYEGKEFEVKLREKKPGLLTEQLK 280          
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A833QN24_9POAL (Proline-rich spliceosome-associated family protein isoform 2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QN24_9POAL)

HSP 1 Score: 252 bits (643), Expect = 1.950e-80
Identity = 167/255 (65.49%), Postives = 201/255 (78.82%), Query Frame = 1
Query:    1 KVEHVVDNEAVLENAEMDQAYVQEFRQIFERFAKIADEASGAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVGPRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
            KV+  V+ E V E AE+D +++++F+ +FE+F+   + A  +  DA XXXXXXXXXXXXXXXXXXXXXXXXXXXXX            +S K+RKL+ R+ +AELKQ+  +PDVVE  DVTA+DP++LV LKSYRNTVPVPRHWCQKRK+LQGKRGIEK PFQLPDFIA TGI+K+R A  E +  KK KQKQRER+QPKMGK+DIDYQVLHDAFFKYQTKP LT  GDLYYEGKEFE + +E KPG +S EL+E
Sbjct:   17 KVDLSVEVEYVPEKAEVDASFLEDFKSVFEKFS-FKETAPISEEDAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-----------VSNKKRKLQRRMKIAELKQICSKPDVVEVWDVTASDPKLLVSLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERIQPKMGKMDIDYQVLHDAFFKYQTKPKLTTHGDLYYEGKEFEVKLREMKPGMLSKELKE 259          
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A7S2Y464_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y464_9STRA)

HSP 1 Score: 255 bits (651), Expect = 7.510e-79
Identity = 127/167 (76.05%), Postives = 145/167 (86.83%), Query Frame = 1
Query:  262 RLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELR 762
            +LSRK RK  NRLSVAELKQLVQRPDVVEAHDVTAADPR+LVFLK++RNTV VPRHW  KRKYLQGKRGI+K PF LPDFIA TGI+K+R +VEE D++K+AKQ+ RERV PKMGKIDIDYQVLHDAFFK+QTKP LTR GDLYYEGKEFE    E +PG ++ +L+
Sbjct:  184 KLSRKARKRLNRLSVAELKQLVQRPDVVEAHDVTAADPRLLVFLKAHRNTVAVPRHWSHKRKYLQGKRGIDKKPFALPDFIAQTGIEKIRNSVEELDAMKRAKQRMRERVNPKMGKIDIDYQVLHDAFFKWQTKPSLTRHGDLYYEGKEFEVNYAEKRPGVLTDDLK 350          
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A7I8K3I0_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K3I0_SPIIN)

HSP 1 Score: 256 bits (654), Expect = 2.060e-78
Identity = 140/255 (54.90%), Postives = 176/255 (69.02%), Query Frame = 1
Query:    1 KVEHVVDNEAVLENAEMDQAYVQEFRQIFERFAKIADEASGAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVGPRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
            KVE  ++ E V E AE++  ++++F+++FE+F+  +D   GA  +A                                   E+GV    S K++KL+ R+ +AELKQ+  +PDVVE  D TAADP++LVFLKSYRNTVPVPRHWCQKRK+LQGKRGIEK PFQLPDFIA TGI+K+R A  E +  KK KQKQRER+QPKMGK+DIDYQVLHDAFFKYQTKP LT  GDLY+EGKEFE + +E KPG +S EL+E
Sbjct:   81 KVEEKIEVEYVPEKAEIEDTFLEDFKKVFEKFS-FSDSVPGAEDNAKNVEAANAVARQEAKSDSDEEEQDNQMK-------EKGV----SNKKKKLQRRMKIAELKQISSKPDVVEIWDATAADPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTHGDLYHEGKEFEVKLREMKPGTLSHELKE 323          
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: UPI0018AF00F4 (splicing factor 3B subunit 2 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AF00F4)

HSP 1 Score: 255 bits (651), Expect = 4.770e-78
Identity = 158/255 (61.96%), Postives = 189/255 (74.12%), Query Frame = 1
Query:    1 KVEHVVDNEAVLENAEMDQAYVQEFRQIFERFAKIADEASGAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVGPRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
            +VE  V+ E V E AE+D  +++EF+ + E+F  I+ +AS  A D A             XXXXXXXXXXXXXXXX     ++G+    S K++KL  R+ +A+LKQ+  RPDVVE  D TAADPR+LVFLKSYRNTVPVPRHW QKRK+LQGKRGIEK PFQLPDFIA TGI+K+R A  E +  KK KQKQRER+QPKMGK+DIDYQVLHDAFFKYQTKP LT  GDLYYEGKEFE + +E KPG +S EL+E
Sbjct:   66 EVEVAVEIEYVPEKAEIDDDFLEEFKHVLEKF--ISKDASAGAEDDAKKDEAAENTGQKKXXXXXXXXXXXXXXXXK----DKGI----SNKKKKLLRRMKIADLKQICSRPDVVEVWDATAADPRLLVFLKSYRNTVPVPRHWSQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTHGDLYYEGKEFEVKLREMKPGMLSKELKE 310          
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A2P2L7W2_RHIMU (Pliceosome associated family protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2L7W2_RHIMU)

HSP 1 Score: 248 bits (633), Expect = 6.100e-78
Identity = 123/167 (73.65%), Postives = 141/167 (84.43%), Query Frame = 1
Query:  265 LSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
            LS K++KL  R+ +AELKQ+  RPDVVE  D TAADP++LVFLKSYRNTVPVPRHWCQKRK+LQGKRGIEK PFQLPDFIA TGI+K+R A  E +  KK KQKQRER+QPKMGK+DIDYQVLHDAFFKYQTKP LT  GDLY+EGKEFE + +E KPG +S EL+E
Sbjct:  160 LSNKKKKLLRRMKIAELKQICSRPDVVEVWDATAADPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTLGDLYHEGKEFEVKLREMKPGSLSHELKE 326          
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A803LLD4_CHEQI (PSP domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LLD4_CHEQI)

HSP 1 Score: 250 bits (638), Expect = 1.080e-77
Identity = 123/167 (73.65%), Postives = 142/167 (85.03%), Query Frame = 1
Query:  265 LSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
            +S K++KL+ R+ +AELKQ+ +RPDVVE  D TA DP++LVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEK PFQLPDFIA TGI+K+R A  E +  KK KQKQRER+QPKMGK+DIDYQVLHDAFFKYQTKP LT  GDLYYEGKEFE + +E KPG +S EL+E
Sbjct:   93 ISNKKKKLQRRMKIAELKQICRRPDVVEIWDATAHDPKLLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSYGDLYYEGKEFEVKLREMKPGTLSKELKE 259          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQK5_9PHAE9.450e-10481.01PSP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CFT2_9STRA2.190e-8372.55Proline-rich spliceosome-associated family protein... [more]
A0A7S3XPZ4_HETAK9.860e-8378.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2W121_9STRA1.600e-8063.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A833QN24_9POAL1.950e-8065.49Proline-rich spliceosome-associated family protein... [more]
A0A7S2Y464_9STRA7.510e-7976.05Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7I8K3I0_SPIIN2.060e-7854.90Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
UPI0018AF00F44.770e-7861.96splicing factor 3B subunit 2 n=1 Tax=Dioscorea cay... [more]
A0A2P2L7W2_RHIMU6.100e-7873.65Pliceosome associated family protein n=1 Tax=Rhizo... [more]
A0A803LLD4_CHEQI1.080e-7773.65PSP domain-containing protein n=1 Tax=Chenopodium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71565contigH-elongata_contig71565:417..2616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.6
Seed ortholog evalue2.7e-87
Seed eggNOG ortholog2880.D7FNF6
Preferred nameSF3B2
KEGG koko:K12829,ko:K16061
KEGG Pathwayko03040,ko04120,ko04215,ko05145,ko05200,ko05222,map03040,map04120,map04215,map05145,map05200,map05222
KEGG ModuleM00352
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5182@1,KOG2330@2759
COG Functional cat.AV
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Exons4
Model size765
Cds size765
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71565.14826.1prot_H-elongata_contig71565.14826.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71565 417..2616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931116.809258-CDS-H-elongata_contig71565:416..5541622931116.809258-CDS-H-elongata_contig71565:416..554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71565 417..554 -
1691679705.1156504-CDS-H-elongata_contig71565:416..5541691679705.1156504-CDS-H-elongata_contig71565:416..554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71565 417..554 -
1622931116.8234885-CDS-H-elongata_contig71565:835..8981622931116.8234885-CDS-H-elongata_contig71565:835..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71565 836..898 -
1691679705.1285434-CDS-H-elongata_contig71565:835..8981691679705.1285434-CDS-H-elongata_contig71565:835..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71565 836..898 -
1622931116.8394213-CDS-H-elongata_contig71565:1234..14021622931116.8394213-CDS-H-elongata_contig71565:1234..1402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71565 1235..1402 -
1691679705.1363957-CDS-H-elongata_contig71565:1234..14021691679705.1363957-CDS-H-elongata_contig71565:1234..1402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71565 1235..1402 -
1622931116.8581781-CDS-H-elongata_contig71565:2220..26161622931116.8581781-CDS-H-elongata_contig71565:2220..2616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71565 2221..2616 -
1691679705.1446228-CDS-H-elongata_contig71565:2220..26161691679705.1446228-CDS-H-elongata_contig71565:2220..2616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71565 2221..2616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71565.14826.1

>prot_H-elongata_contig71565.14826.1 ID=prot_H-elongata_contig71565.14826.1|Name=mRNA_H-elongata_contig71565.14826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
KVEHVVDNEAVLENAEMDQAYVQEFRQIFERFAKIADEASGAAADAAEAE
AEAAAAAAAAAEAEAEAARKKAGAGADMDSDEEGVGPRLSRKQRKLKNRL
SVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKY
LQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPK
MGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFIS
PELRE
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mRNA from alignment at H-elongata_contig71565:417..2616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71565.14826.1 ID=mRNA_H-elongata_contig71565.14826.1|Name=mRNA_H-elongata_contig71565.14826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2200bp|location=Sequence derived from alignment at H-elongata_contig71565:417..2616- (Himanthalia elongata Himel1 dioecious)
AAGGTCGAGCATGTCGTGGATAACGAGGCCGTCCTCGAAAACGCTGAAAT GGACCAAGCCTACGTTCAAGAATTCAGACAGATTTTTGAGCGGTTCGCCA AGATTGCCGACGAGGCCAGCGGTGCAGCTGCGGATGCCGCGGAAGCGGAG GCGGAAGCAGCAGCAGCAGCAGCAGCGGCCGCCGAGGCGGAGGCGGAGGC GGCTAGAAAAAAAGCGGGGGCGGGGGCTGACATGGACTCGGACGAGGAAG GAGTGGGCCCACGATTATCGCGTAAGCAGCGAAAACTTAAAAACAGGCTC TCCGTGGCGGAGCTCAAGCAGCTCGTGCAGCGACCGGACGTGGTGGAGGC GCATGACGTTACGGCAGCAGATCCGCGAATGTTGGTTTTCCTAAAGGTGT GTTCTCTGTGCGGCATAATGTAGACATAGAAACTAAAAGAATATTACTAG TGTGAGAGGTTACCCACGAAACCTCAGGAAACTCGCTAGGTTTTGTCAGC AAAAATGTCGATTTGAATACGTAGGTCTCAAAATATTTTCCCCTAGGGCG TAAGTTTCGACGTTAGTGCTGTTTCCGCCGGCGAGGAAAAGAGAAAGGGG TATGATATAATTATGATTAACGCATGTCGTATCCTTATGGGCTTGGTCAC GTTTCCCATTAATGTTGGAACGGAGCGGTATATCGAGTTTTGGCCGGCCA GACTGTGTTTCACAAGGATGCTACCAGCTTTTAGTCATACCACCCTCGCG TTTGGTACGCCAAACAGGACACGTCATGGATTTATGGGGAGACACCGGGT AACGAAATGTTGCTCATCCAGCGGTCGCTATCGTTATCACTATACTATAC TATACTATAGTTTATTATGTCAACCACCACAAAAAGGCTTTGATCTCCGT GCGAGCGCGTAAGCGCCGCGCGTACACTATATACATATCGGTATATGAAT GATCCAATCATACTATAATCTACTCCTGACTATTTAAAACTATAACCTGC CGGAGTATTCTCAAAGCCTATGGTTGCTTTGGGGTTTTCCAACAATCCAT TTGTTCAAAAGACATCCTATAGAATAGGATATGTTTCATTCCTTTGAGGA GATATAAAGACTCTTTGACGGATATGTCTGAGCTCACAGGATACCCTCTG CATGTGAAGAATAGACGTTCCGACCATAACACCTCTGCCCCCTGTGCAAC ACCCATCCTCACAGTCTTACCGTAACACGGTGCCAGTACCGCGACATTGG TGCCAGAAGCGCAAGTACCTGCAGGGGAAGCGAGGTATTGAGAAGACCCC CTTCCAGCTGCCAGATTTCATTGCCATGACTGGTATCGACAAGGTTCGGG CGGCGGTCGAGGAGGCCGATAGCCTGAAGAAGGTGCGATGGCCGATGAAC GACCTCCAATCGAACATATGAATCGTTAGCAACCTTCCTGACCCGCGGCG AATAGGCGGGGGAGGGTCAAGGGCAAACCGCGGCGTGTGTCGTTATCGAT TCCCTCCGTGCTCATCGCCTTTTCGCTGATTTGGTGGGCACATTTCTCCA CGTCGTCAGCGACCAGTCCACGGAATTTCAAGGCGTTTATCGAAAGGGCC CTTCGCCGCTCTCGCGCTTTCGCGCCATACGCTGGTGGCTTGTCGAGCTC ATGATAATCCCCCCCCCCCTCATTCCCTGATGGCAATGGCAATGGCAATG ACACTTCTCGCGCGGCAGGCGAAGCAGAAGCAGAGGGAGCGTGTGCAGCC CAAGATGGGCAAGATCGATATCGACTATCAGGTGCAATCACAACTAAGTG AGGATTTTCCTCGACGGGGGCGGTCGAAGCACACGAAGCGCGGGTCGGCG TGAATCGTCGGCGTGAAAAACCGTGTTGGCGCAATGAGCTCATGTCGATA TAAATCTGACTCAAACCTCTTGCGTCTTTTGAAGAGCGCAAGGTTCGTCG CTTCAAATTGTTTTGGGGGTGCTTTGACGTCCCTTCGCGCCGGCCCGCAC TCTCCGACCAAGATGACGATATCCTTTCTCCCGTTGTCGGCGCCGGTGTC CCGCGAGCGCAGGTGCTGCATGACGCCTTCTTTAAGTATCAAACCAAGCC GCCCCTCACACGCCCGGGCGATCTTTACTACGAGGGGAAGGAATTCGAGG CAAGAAACAAGGAGCACAAGCCTGGGTTCATTAGCCCGGAGTTGCGAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig71565:417..2616-

>mRNA_H-elongata_contig71565.14826.1 ID=mRNA_H-elongata_contig71565.14826.1|Name=mRNA_H-elongata_contig71565.14826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig71565:417..2616- (Himanthalia elongata Himel1 dioecious)
AAGGTCGAGCATGTCGTGGATAACGAGGCCGTCCTCGAAAACGCTGAAAT
GGACCAAGCCTACGTTCAAGAATTCAGACAGATTTTTGAGCGGTTCGCCA
AGATTGCCGACGAGGCCAGCGGTGCAGCTGCGGATGCCGCGGAAGCGGAG
GCGGAAGCAGCAGCAGCAGCAGCAGCGGCCGCCGAGGCGGAGGCGGAGGC
GGCTAGAAAAAAAGCGGGGGCGGGGGCTGACATGGACTCGGACGAGGAAG
GAGTGGGCCCACGATTATCGCGTAAGCAGCGAAAACTTAAAAACAGGCTC
TCCGTGGCGGAGCTCAAGCAGCTCGTGCAGCGACCGGACGTGGTGGAGGC
GCATGACGTTACGGCAGCAGATCCGCGAATGTTGGTTTTCCTAAAGAAGG
TCGAGCATGTCGTGGATAACGAGGCCGTCCTCGAAAACGCTGAAATGGAC
CAAGCCTACGTTCAAGAATTCAGACAGATTTTTGAGCGGTTCGCCAAGAT
TGCCGACGAGGCCAGCGGTGCAGCTGCGGATGCCGCGGAAGCGGAGGCGG
AAGCAGCAGCAGCAGCAGCAGCGGCCGCCGAGGCGGAGGCGGAGGCGGCT
AGAAAAAAAGCGGGGGCGGGGGCTGACATGGACTCGGACGAGGAAGGAGT
GGGCCCACGATTATCGCGTAAGCAGCGAAAACTTAAAAACAGGCTCTCCG
TGGCGGAGCTCAAGCAGCTCGTGCAGCGACCGGACGTGGTGGAGGCGCAT
GACGTTACGGCAGCAGATCCGCGAATGTTGGTTTTCCTAAAGTCTTACCG
TAACACGGTGCCAGTACCGCGACATTGGTGCCAGAAGCGCAAGTACCTGC
AGGGGAAGCGAGGTATTGAGAAGACCCCCTTCCAGCTGCCAGATTTCATT
GCCATGACTGGTATCGACAAGGTTCGGGCGGCGGTCGAGGAGGCCGATAG
CCTGAAGAAGTCTTACCGTAACACGGTGCCAGTACCGCGACATTGGTGCC
AGAAGCGCAAGTACCTGCAGGGGAAGCGAGGTATTGAGAAGACCCCCTTC
CAGCTGCCAGATTTCATTGCCATGACTGGTATCGACAAGGTTCGGGCGGC
GGTCGAGGAGGCCGATAGCCTGAAGAAGGCGAAGCAGAAGCAGAGGGAGC
GTGTGCAGCCCAAGATGGGCAAGATCGATATCGACTATCAGGCGAAGCAG
AAGCAGAGGGAGCGTGTGCAGCCCAAGATGGGCAAGATCGATATCGACTA
TCAGGTGCTGCATGACGCCTTCTTTAAGTATCAAACCAAGCCGCCCCTCA
CACGCCCGGGCGATCTTTACTACGAGGGGAAGGAATTCGAGGCAAGAAAC
AAGGAGCACAAGCCTGGGTTCATTAGCCCGGAGTTGCGAGAGGTGCTGCA
TGACGCCTTCTTTAAGTATCAAACCAAGCCGCCCCTCACACGCCCGGGCG
ATCTTTACTACGAGGGGAAGGAATTCGAGGCAAGAAACAAGGAGCACAAG
CCTGGGTTCATTAGCCCGGAGTTGCGAGAG
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