mRNA_H-elongata_contig71565.14826.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A6H5KQK5_9PHAE (PSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQK5_9PHAE) HSP 1 Score: 324 bits (830), Expect = 9.450e-104 Identity = 209/258 (81.01%), Postives = 225/258 (87.21%), Query Frame = 1
Query: 1 KVEHVVDNEAVLENAEMDQAYVQEFRQIFERFAKIADEASGAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEE---GVGPRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
+VE+V DN +VL+ AEMD A ++EF+QIFER XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G GPRLSRK RKLK+RLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPF+LP+FIAMTGIDK+RAA+EEADS KKAKQKQRERV PKMGKIDIDYQVLHDAFFK+QTKPPLT PGDLYYEGKEFEA+N+EHKPG IS +LRE
Sbjct: 123 QVEYVADNTSVLDGAEMDAASLEEFKQIFERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGPRLSRKARKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSQKKAKQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISSDLRE 380
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A836CFT2_9STRA (Proline-rich spliceosome-associated family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT2_9STRA) HSP 1 Score: 269 bits (687), Expect = 2.190e-83 Identity = 185/255 (72.55%), Postives = 210/255 (82.35%), Query Frame = 1
Query: 1 KVEHVVDNEA-VLENAEMDQAYVQEFRQIFERFAKIADEASGAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVGPRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELR 762
+VE+V + + ++E + MD +EF++IFERF+KI A D AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XX +LSRK RKLK+RL+VAELKQLVQRPDVVEAHDVTAADPRMLV LKSYRNTVPVPRHWC KRKYLQGKRGIEK PF+LP+FIAMTGI K+R V+EAD K+AKQ+ RERVQPKMGKIDIDYQVLHDAFFK+QTKP +T GDLY+EGKEFE R +E KPG +S ELR
Sbjct: 55 EVEYVAPSASDLVEGSGMDDEVAKEFKEIFERFSKIGR----AEEDIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEXXXXXGAGKLSRKARKLKSRLTVAELKQLVQRPDVVEAHDVTAADPRMLVHLKSYRNTVPVPRHWCHKRKYLQGKRGIEKKPFELPEFIAMTGISKLRDNVDEADG-KRAKQRSRERVQPKMGKIDIDYQVLHDAFFKWQTKPHMTSVGDLYFEGKEFEVRLREKKPGQLSEELR 304
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A7S3XPZ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPZ4_HETAK) HSP 1 Score: 263 bits (673), Expect = 9.860e-83 Identity = 132/169 (78.11%), Postives = 148/169 (87.57%), Query Frame = 1
Query: 259 PRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
PRLSRKQRK +RLSVAELKQLVQRP+VVEAHDVTAADPR+LV LK+YR TVPVPRHWC KRKYLQGKRG+EK P+QLPDFIA TGI K+R A EE D++K+AKQKQRERVQPKMGKIDIDYQVLHDAFFK+QTKP +T G+LYYEGKEFE R ++ PG +S LRE
Sbjct: 17 PRLSRKQRKKLHRLSVAELKQLVQRPEVVEAHDVTAADPRLLVHLKAYRGTVPVPRHWCHKRKYLQGKRGVEKQPWQLPDFIAQTGISKLRGAQEELDAMKRAKQKQRERVQPKMGKIDIDYQVLHDAFFKWQTKPRMTTHGELYYEGKEFEVRLRDKMPGALSQPLRE 185
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A7S2W121_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W121_9STRA) HSP 1 Score: 260 bits (665), Expect = 1.600e-80 Identity = 151/237 (63.71%), Postives = 176/237 (74.26%), Query Frame = 1
Query: 52 DQAYVQEFRQIFERFAKIADEASGAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVGPRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELR 762
D + +F+ IFE+FA A+E +G +A AA XXXXXXXXX EEG +LSRK RK ++RLSVAELKQLV RPDVVEAHD+TAADPR+LVFLK YRNTVPVPRHWC KRKYLQGKRGIEK PFQLP+FIA TGI+K+R A+ E ++L AKQK R RVQPKMGKIDIDYQVLHDAFFKYQ KP LT GD+YYEGKEFE + +E KPG ++ +L+
Sbjct: 52 DDPLMSQFKGIFEKFAS-AEELTGESAVAAANGAEAEEXXXXXXXXXTADAAGQDAE-------EEGGEVKLSRKARKKQSRLSVAELKQLVGRPDVVEAHDITAADPRLLVFLKGYRNTVPVPRHWCHKRKYLQGKRGIEKPPFQLPEFIASTGIEKIRTAIMEQEALASAKQKGRGRVQPKMGKIDIDYQVLHDAFFKYQNKPSLTLHGDIYYEGKEFEVKLREKKPGLLTEQLK 280
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A833QN24_9POAL (Proline-rich spliceosome-associated family protein isoform 2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QN24_9POAL) HSP 1 Score: 252 bits (643), Expect = 1.950e-80 Identity = 167/255 (65.49%), Postives = 201/255 (78.82%), Query Frame = 1
Query: 1 KVEHVVDNEAVLENAEMDQAYVQEFRQIFERFAKIADEASGAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVGPRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
KV+ V+ E V E AE+D +++++F+ +FE+F+ + A + DA XXXXXXXXXXXXXXXXXXXXXXXXXXXXX +S K+RKL+ R+ +AELKQ+ +PDVVE DVTA+DP++LV LKSYRNTVPVPRHWCQKRK+LQGKRGIEK PFQLPDFIA TGI+K+R A E + KK KQKQRER+QPKMGK+DIDYQVLHDAFFKYQTKP LT GDLYYEGKEFE + +E KPG +S EL+E
Sbjct: 17 KVDLSVEVEYVPEKAEVDASFLEDFKSVFEKFS-FKETAPISEEDAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-----------VSNKKRKLQRRMKIAELKQICSKPDVVEVWDVTASDPKLLVSLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERIQPKMGKMDIDYQVLHDAFFKYQTKPKLTTHGDLYYEGKEFEVKLREMKPGMLSKELKE 259
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A7S2Y464_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y464_9STRA) HSP 1 Score: 255 bits (651), Expect = 7.510e-79 Identity = 127/167 (76.05%), Postives = 145/167 (86.83%), Query Frame = 1
Query: 262 RLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELR 762
+LSRK RK NRLSVAELKQLVQRPDVVEAHDVTAADPR+LVFLK++RNTV VPRHW KRKYLQGKRGI+K PF LPDFIA TGI+K+R +VEE D++K+AKQ+ RERV PKMGKIDIDYQVLHDAFFK+QTKP LTR GDLYYEGKEFE E +PG ++ +L+
Sbjct: 184 KLSRKARKRLNRLSVAELKQLVQRPDVVEAHDVTAADPRLLVFLKAHRNTVAVPRHWSHKRKYLQGKRGIDKKPFALPDFIAQTGIEKIRNSVEELDAMKRAKQRMRERVNPKMGKIDIDYQVLHDAFFKWQTKPSLTRHGDLYYEGKEFEVNYAEKRPGVLTDDLK 350
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A7I8K3I0_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K3I0_SPIIN) HSP 1 Score: 256 bits (654), Expect = 2.060e-78 Identity = 140/255 (54.90%), Postives = 176/255 (69.02%), Query Frame = 1
Query: 1 KVEHVVDNEAVLENAEMDQAYVQEFRQIFERFAKIADEASGAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVGPRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
KVE ++ E V E AE++ ++++F+++FE+F+ +D GA +A E+GV S K++KL+ R+ +AELKQ+ +PDVVE D TAADP++LVFLKSYRNTVPVPRHWCQKRK+LQGKRGIEK PFQLPDFIA TGI+K+R A E + KK KQKQRER+QPKMGK+DIDYQVLHDAFFKYQTKP LT GDLY+EGKEFE + +E KPG +S EL+E
Sbjct: 81 KVEEKIEVEYVPEKAEIEDTFLEDFKKVFEKFS-FSDSVPGAEDNAKNVEAANAVARQEAKSDSDEEEQDNQMK-------EKGV----SNKKKKLQRRMKIAELKQISSKPDVVEIWDATAADPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTHGDLYHEGKEFEVKLREMKPGTLSHELKE 323
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: UPI0018AF00F4 (splicing factor 3B subunit 2 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AF00F4) HSP 1 Score: 255 bits (651), Expect = 4.770e-78 Identity = 158/255 (61.96%), Postives = 189/255 (74.12%), Query Frame = 1
Query: 1 KVEHVVDNEAVLENAEMDQAYVQEFRQIFERFAKIADEASGAAADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGVGPRLSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
+VE V+ E V E AE+D +++EF+ + E+F I+ +AS A D A XXXXXXXXXXXXXXXX ++G+ S K++KL R+ +A+LKQ+ RPDVVE D TAADPR+LVFLKSYRNTVPVPRHW QKRK+LQGKRGIEK PFQLPDFIA TGI+K+R A E + KK KQKQRER+QPKMGK+DIDYQVLHDAFFKYQTKP LT GDLYYEGKEFE + +E KPG +S EL+E
Sbjct: 66 EVEVAVEIEYVPEKAEIDDDFLEEFKHVLEKF--ISKDASAGAEDDAKKDEAAENTGQKKXXXXXXXXXXXXXXXXK----DKGI----SNKKKKLLRRMKIADLKQICSRPDVVEVWDATAADPRLLVFLKSYRNTVPVPRHWSQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTHGDLYYEGKEFEVKLREMKPGMLSKELKE 310
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A2P2L7W2_RHIMU (Pliceosome associated family protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2L7W2_RHIMU) HSP 1 Score: 248 bits (633), Expect = 6.100e-78 Identity = 123/167 (73.65%), Postives = 141/167 (84.43%), Query Frame = 1
Query: 265 LSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
LS K++KL R+ +AELKQ+ RPDVVE D TAADP++LVFLKSYRNTVPVPRHWCQKRK+LQGKRGIEK PFQLPDFIA TGI+K+R A E + KK KQKQRER+QPKMGK+DIDYQVLHDAFFKYQTKP LT GDLY+EGKEFE + +E KPG +S EL+E
Sbjct: 160 LSNKKKKLLRRMKIAELKQICSRPDVVEVWDATAADPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTLGDLYHEGKEFEVKLREMKPGSLSHELKE 326
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Match: A0A803LLD4_CHEQI (PSP domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LLD4_CHEQI) HSP 1 Score: 250 bits (638), Expect = 1.080e-77 Identity = 123/167 (73.65%), Postives = 142/167 (85.03%), Query Frame = 1
Query: 265 LSRKQRKLKNRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFQLPDFIAMTGIDKVRAAVEEADSLKKAKQKQRERVQPKMGKIDIDYQVLHDAFFKYQTKPPLTRPGDLYYEGKEFEARNKEHKPGFISPELRE 765
+S K++KL+ R+ +AELKQ+ +RPDVVE D TA DP++LVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEK PFQLPDFIA TGI+K+R A E + KK KQKQRER+QPKMGK+DIDYQVLHDAFFKYQTKP LT GDLYYEGKEFE + +E KPG +S EL+E
Sbjct: 93 ISNKKKKLQRRMKIAELKQICRRPDVVEIWDATAHDPKLLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSYGDLYYEGKEFEVKLREMKPGTLSKELKE 259 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71565.14826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71565.14826.1 >prot_H-elongata_contig71565.14826.1 ID=prot_H-elongata_contig71565.14826.1|Name=mRNA_H-elongata_contig71565.14826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp KVEHVVDNEAVLENAEMDQAYVQEFRQIFERFAKIADEASGAAADAAEAEback to top mRNA from alignment at H-elongata_contig71565:417..2616- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71565.14826.1 ID=mRNA_H-elongata_contig71565.14826.1|Name=mRNA_H-elongata_contig71565.14826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2200bp|location=Sequence derived from alignment at H-elongata_contig71565:417..2616- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71565:417..2616- >mRNA_H-elongata_contig71565.14826.1 ID=mRNA_H-elongata_contig71565.14826.1|Name=mRNA_H-elongata_contig71565.14826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig71565:417..2616- (Himanthalia elongata Himel1 dioecious)back to top |