mRNA_H-elongata_contig7156.14825.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7156.14825.1
Unique NamemRNA_H-elongata_contig7156.14825.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7156.14825.1 vs. uniprot
Match: D8LEY3_ECTSI (Serine/threonine-protein phosphatase 6 regulatory subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY3_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 2.260e-21
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    4 QKILTVLLKHKCGPMTSFVNAGGLDLFRKMVRHLGNFSIMQVAKLLLLPKYAAFQ 168
            +K+LTVLLKH+CG  T+FVN  GLDLFR+MVRHLGNFS+MQVAKLLLLPKYAA Q
Sbjct:  127 EKVLTVLLKHRCGATTAFVNERGLDLFRRMVRHLGNFSVMQVAKLLLLPKYAALQ 181
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BLAST of mRNA_H-elongata_contig7156.14825.1 vs. uniprot
Match: A0A6H5LCR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCR6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.330e-14
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:   37 CGPMTSFVNAGGLDLFRKMVRHLGNFSIMQVAKLLLLPKYAAFQ 168
            CG  T+FVN  GLDLFR+MVRHLGN+S+MQVAKLLLLPKYAA Q
Sbjct:   95 CGATTAFVNERGLDLFRRMVRHLGNYSVMQVAKLLLLPKYAALQ 138
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BLAST of mRNA_H-elongata_contig7156.14825.1 vs. uniprot
Match: A0A7S3YK30_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK30_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 6.270e-12
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 FQKILTVLLKHKCGPMTSFVNAGGLDLFRKMVRHLGNFSIMQVAKLLLLPKYAAFQGE 174
            F+K+L+ LL+H+C  + +++NA G  LF    RH GN+S+ Q+ K LLLPKYA  + E
Sbjct:   24 FEKVLSTLLRHRCLALAAYLNARGPPLFAAFARHAGNYSVAQLLKRLLLPKYACVESE 81
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BLAST of mRNA_H-elongata_contig7156.14825.1 vs. uniprot
Match: W7TD98_9STRA (Sit4 phosphatase-associated family protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD98_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.890e-9
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 FQKILTVLLKHKCGPMTSFVNAGGLDLFRKMVRHLGNFSIMQVAKLLLL 147
            F+K++ VLL+ +C  + +F+NAGGL LFRK VRHL N+SIMQV + L L
Sbjct:  136 FEKVVFVLLRLRCVQLMAFLNAGGLPLFRKFVRHLDNYSIMQVVEKLFL 184
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BLAST of mRNA_H-elongata_contig7156.14825.1 vs. uniprot
Match: A0A7S1BSS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BSS7_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 7.440e-5
Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 FQKILTVLLKHKCGPMTSFVNAGGLDLFRKMVRHLGNFSIMQVAKLLLLP 150
            F++++  L + +   +T+F+ AG L L R  +RH+GN+SI+QV + LLLP
Sbjct:  229 FERVVLHLAQCRTLALTTFLRAGSLPLLRNFLRHIGNYSILQVLQRLLLP 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7156.14825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LEY3_ECTSI2.260e-2180.00Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A6H5LCR6_9PHAE1.330e-1479.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YK30_HETAK6.270e-1246.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TD98_9STRA1.890e-957.14Sit4 phosphatase-associated family protein n=3 Tax... [more]
A0A7S1BSS7_9STRA7.440e-542.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7156contigH-elongata_contig7156:893..1075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue9.1e-18
Seed eggNOG ortholog2880.D8LEY3
KEGG koko:K15501
GOsGO:0000226,GO:0000235,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005818,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007275,GO:0008150,GO:0009790,GO:0009987,GO:0015630,GO:0016043,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0030029,GO:0030036,GO:0030588,GO:0030590,GO:0030865,GO:0030866,GO:0032501,GO:0032502,GO:0040001,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051293,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0071840,GO:0071944,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1902850,GO:1903047
EggNOG free text desc.protein phosphatase binding
EggNOG OGsKOG2073@1,KOG2073@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931116.7663357-CDS-H-elongata_contig7156:892..10751622931116.7663357-CDS-H-elongata_contig7156:892..1075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7156 893..1075 +
1691679705.1026018-CDS-H-elongata_contig7156:892..10751691679705.1026018-CDS-H-elongata_contig7156:892..1075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7156 893..1075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7156.14825.1prot_H-elongata_contig7156.14825.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7156 893..1075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7156.14825.1

>prot_H-elongata_contig7156.14825.1 ID=prot_H-elongata_contig7156.14825.1|Name=mRNA_H-elongata_contig7156.14825.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
FQKILTVLLKHKCGPMTSFVNAGGLDLFRKMVRHLGNFSIMQVAKLLLLP
KYAAFQGEKI*
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mRNA from alignment at H-elongata_contig7156:893..1075+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7156.14825.1 ID=mRNA_H-elongata_contig7156.14825.1|Name=mRNA_H-elongata_contig7156.14825.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig7156:893..1075+ (Himanthalia elongata Himel1 dioecious)
TTTCAAAAGATTTTAACGGTGCTCCTTAAGCATAAGTGCGGACCAATGAC
GTCATTCGTCAACGCGGGGGGCTTAGACCTCTTCCGGAAGATGGTGCGGC
ATCTTGGGAATTTTTCCATTATGCAAGTGGCCAAGCTGTTGCTGCTGCCC
AAGTATGCCGCCTTCCAAGGTGAGAAGATATGA
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Coding sequence (CDS) from alignment at H-elongata_contig7156:893..1075+

>mRNA_H-elongata_contig7156.14825.1 ID=mRNA_H-elongata_contig7156.14825.1|Name=mRNA_H-elongata_contig7156.14825.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig7156:893..1075+ (Himanthalia elongata Himel1 dioecious)
TTTCAAAAGATTTTAACGGTGCTCCTTAAGCATAAGTGCGGACCAATGAC
GTCATTCGTCAACGCGGGGGGCTTAGACCTCTTCCGGAAGATGGTGCGGC
ATCTTGGGAATTTTTCCATTATGCAAGTGGCCAAGCTGTTGCTGCTGCCC
AAGTATGCCGCCTTCCAAGGTGAGAAGATATGATTTCAAAAGATTTTAAC
GGTGCTCCTTAAGCATAAGTGCGGACCAATGACGTCATTCGTCAACGCGG
GGGGCTTAGACCTCTTCCGGAAGATGGTGCGGCATCTTGGGAATTTTTCC
ATTATGCAAGTGGCCAAGCTGTTGCTGCTGCCCAAGTATGCCGCCTTCCA
AGGTGAGAAGATATGA
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