mRNA_H-elongata_contig71536.14823.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71536.14823.1
Unique NamemRNA_H-elongata_contig71536.14823.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71536.14823.1 vs. uniprot
Match: A0A6H5KQH0_9PHAE (Pep3_Vps18 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH0_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.580e-21
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:   25 SALLEFIARPSEERHFDPMYALRLCAQHGRSLAMVHLYSAMGLWEEAVDLAL 180
            S+LL FIARP EER FDPMYALRLC+QHGRSLA VHLYSAMGLWEEAVDLAL
Sbjct: 1045 SSLLAFIARPPEERFFDPMYALRLCSQHGRSLACVHLYSAMGLWEEAVDLAL 1096
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BLAST of mRNA_H-elongata_contig71536.14823.1 vs. uniprot
Match: A0A397UPW1_9GLOM (Pep3/Vps18/deep orange family-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UPW1_9GLOM)

HSP 1 Score: 66.6 bits (161), Expect = 2.280e-11
Identity = 30/58 (51.72%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    7 TSSKSRSALLEFIARPSEERHFDPMYALRLCAQHGRSLAMVHLYSAMGLWEEAVDLAL 180
            +S+   ++LL+F+AR  +E H++  YALR+C+Q+G++ + VH+YS MGL+EEAVDLAL
Sbjct:  705 SSNNDETSLLKFLAREGKEPHYNMDYALRICSQNGKTQSCVHIYSNMGLFEEAVDLAL 762
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BLAST of mRNA_H-elongata_contig71536.14823.1 vs. uniprot
Match: A0A836CAW5_9STRA (Pep3_Vps18 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW5_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.110e-11
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   31 LLEFIARPSEERHFDPMYALRLCAQHGRSLAMVHLYSAMGLWEEAVDLAL 180
            LL+ +ARP E+R FD  YALR+CAQ GR  A V +Y+AMGL+EEAVDLAL
Sbjct:  851 LLDLLARPPEKRFFDLTYALRVCAQLGRRRARVAIYAAMGLYEEAVDLAL 900
[Close]
BLAST of mRNA_H-elongata_contig71536.14823.1 vs. uniprot
Match: A0A1Y2XEG8_9PEZI (Pep3_Vps18 domain-containing protein n=9 Tax=Hypoxylaceae TaxID=2033035 RepID=A0A1Y2XEG8_9PEZI)

HSP 1 Score: 65.5 bits (158), Expect = 5.810e-11
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   13 SKSRSALLEFIARPSEERHFDPMYALRLCAQHGRSLAMVHLYSAMGLWEEAVDLAL 180
            SK  S LL ++    EE HFDP +ALRLC QH R+L+ VH+Y+ MG + +AVDLAL
Sbjct:  687 SKDESGLLAYLESQGEEPHFDPDFALRLCIQHKRTLSCVHIYTNMGQYVQAVDLAL 742
[Close]
BLAST of mRNA_H-elongata_contig71536.14823.1 vs. uniprot
Match: A0A1X2IBI1_9FUNG (Pep3/Vps18/deep orange family-domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IBI1_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 7.950e-11
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 AVTSSKSRSALLEFIARPSEERHFDPMYALRLCAQHGRSLAMVHLYSAMGLWEEAVDLAL 180
            A+ S++  +ALL F+     E H++  YALRLC+Q+GR  + VH+YS MGL+EEAV+LAL
Sbjct:  748 AIQSTRDETALLAFLKNEGREMHYNLDYALRLCSQNGRMQSCVHIYSQMGLYEEAVNLAL 807
[Close]
BLAST of mRNA_H-elongata_contig71536.14823.1 vs. uniprot
Match: A0A1V1TTX3_9FUNG (Pep3_Vps18 domain-containing protein n=3 Tax=Fungi TaxID=4751 RepID=A0A1V1TTX3_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 1.480e-10
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   13 SKSRSALLEFIARPSEERHFDPMYALRLCAQHGRSLAMVHLYSAMGLWEEAVDLAL 180
            SK+ S LL ++    +E HFDP +ALRLC QH R+L+ VH+Y+ MG + +AVDLAL
Sbjct:  686 SKAESGLLAYLESQGDEPHFDPDFALRLCIQHKRTLSCVHIYTNMGQYIQAVDLAL 741
[Close]
BLAST of mRNA_H-elongata_contig71536.14823.1 vs. uniprot
Match: A0A1Y2DIL4_9PEZI (Pep3/Vps18/deep orange family-domain-containing protein n=1 Tax=Pseudomassariella vexata TaxID=1141098 RepID=A0A1Y2DIL4_9PEZI)

HSP 1 Score: 64.3 bits (155), Expect = 1.480e-10
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   13 SKSRSALLEFIARPSEERHFDPMYALRLCAQHGRSLAMVHLYSAMGLWEEAVDLAL 180
            SK  SALL ++    EE  FDP +ALRLC QH R+L+ VH+Y+ MG + +AVDLAL
Sbjct:  688 SKDESALLSYLESQGEEPRFDPDFALRLCIQHKRTLSCVHIYTNMGQYVQAVDLAL 743
[Close]
BLAST of mRNA_H-elongata_contig71536.14823.1 vs. uniprot
Match: A0A0F4ZLD2_9PEZI (Pep3_Vps18 domain-containing protein n=1 Tax=Thielaviopsis punctulata TaxID=72032 RepID=A0A0F4ZLD2_9PEZI)

HSP 1 Score: 63.9 bits (154), Expect = 2.030e-10
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 AVTSSKSRSALLEFIARPSEERHFDPMYALRLCAQHGRSLAMVHLYSAMGLWEEAVDLAL 180
            A +SSK  SALL ++    EE  FDP +ALRLC +H R+L+ VH+Y+ MG + +AVDLAL
Sbjct:  690 ASSSSKDESALLAYLESQGEEPKFDPDFALRLCIEHHRTLSCVHIYTNMGQYLQAVDLAL 749
[Close]
BLAST of mRNA_H-elongata_contig71536.14823.1 vs. uniprot
Match: A0A168M3R9_ABSGL (Pep3_Vps18 domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168M3R9_ABSGL)

HSP 1 Score: 63.9 bits (154), Expect = 2.030e-10
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 AVTSSKSRSALLEFIARPSEERHFDPMYALRLCAQHGRSLAMVHLYSAMGLWEEAVDLAL 180
            A+ S+   +ALL F+     + H++  YALRLC+Q+GRS + VH+YS MGL+EEAV LAL
Sbjct:  769 AIQSTPDETALLAFLKNEGRDMHYNLDYALRLCSQNGRSQSCVHIYSQMGLYEEAVTLAL 828
[Close]
BLAST of mRNA_H-elongata_contig71536.14823.1 vs. uniprot
Match: A0A4Q4YUY2_9PEZI (Pep3_Vps18 domain-containing protein n=6 Tax=Monosporascus TaxID=155415 RepID=A0A4Q4YUY2_9PEZI)

HSP 1 Score: 63.5 bits (153), Expect = 2.770e-10
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   13 SKSRSALLEFIARPSEERHFDPMYALRLCAQHGRSLAMVHLYSAMGLWEEAVDLAL 180
            SK  SALL ++    +E  +DP +ALRLC QH R+L+ VH+Y++MG + +AVDLAL
Sbjct:  686 SKDESALLSYLESQGDEPRYDPDFALRLCIQHKRTLSCVHIYTSMGQYPQAVDLAL 741
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71536.14823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQH0_9PHAE1.580e-2188.46Pep3_Vps18 domain-containing protein n=1 Tax=Ectoc... [more]
A0A397UPW1_9GLOM2.280e-1151.72Pep3/Vps18/deep orange family-domain-containing pr... [more]
A0A836CAW5_9STRA3.110e-1166.00Pep3_Vps18 domain-containing protein n=1 Tax=Tribo... [more]
A0A1Y2XEG8_9PEZI5.810e-1155.36Pep3_Vps18 domain-containing protein n=9 Tax=Hypox... [more]
A0A1X2IBI1_9FUNG7.950e-1151.67Pep3/Vps18/deep orange family-domain-containing pr... [more]
A0A1V1TTX3_9FUNG1.480e-1053.57Pep3_Vps18 domain-containing protein n=3 Tax=Fungi... [more]
A0A1Y2DIL4_9PEZI1.480e-1055.36Pep3/Vps18/deep orange family-domain-containing pr... [more]
A0A0F4ZLD2_9PEZI2.030e-1053.33Pep3_Vps18 domain-containing protein n=1 Tax=Thiel... [more]
A0A168M3R9_ABSGL2.030e-1051.67Pep3_Vps18 domain-containing protein n=1 Tax=Absid... [more]
A0A4Q4YUY2_9PEZI2.770e-1051.79Pep3_Vps18 domain-containing protein n=6 Tax=Monos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71536contigH-elongata_contig71536:185..364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.1
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog588596.U9U1Q4
Preferred namePEP3
KEGG koko:K20181
KEGG Pathwayko04138,map04138
GOsGO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0006464,GO:0006807,GO:0006810,GO:0006887,GO:0006892,GO:0006895,GO:0006903,GO:0006904,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016482,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019898,GO:0022406,GO:0030674,GO:0030897,GO:0031090,GO:0031312,GO:0031338,GO:0031410,GO:0031982,GO:0032446,GO:0032879,GO:0032889,GO:0032940,GO:0032991,GO:0033043,GO:0033263,GO:0035542,GO:0036211,GO:0042144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043412,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045324,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0048193,GO:0048278,GO:0048284,GO:0050789,GO:0050794,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060090,GO:0060627,GO:0061024,GO:0061025,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0080171,GO:0097576,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0099022,GO:0099023,GO:0140029,GO:0140056,GO:0140096,GO:1901564,GO:1902500
EggNOG free text desc.vacuolar protein sorting protein
EggNOG OGs38C0J@33154,3NV4E@4751,KOG2034@1,KOG2034@2759
COG Functional cat.U
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931116.5910883-CDS-H-elongata_contig71536:184..3641622931116.5910883-CDS-H-elongata_contig71536:184..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71536 185..364 -
1691679705.0396273-CDS-H-elongata_contig71536:184..3641691679705.0396273-CDS-H-elongata_contig71536:184..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71536 185..364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71536.14823.1prot_H-elongata_contig71536.14823.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71536 185..364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71536.14823.1

>prot_H-elongata_contig71536.14823.1 ID=prot_H-elongata_contig71536.14823.1|Name=mRNA_H-elongata_contig71536.14823.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
AVTSSKSRSALLEFIARPSEERHFDPMYALRLCAQHGRSLAMVHLYSAMG
LWEEAVDLAL
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mRNA from alignment at H-elongata_contig71536:185..364-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71536.14823.1 ID=mRNA_H-elongata_contig71536.14823.1|Name=mRNA_H-elongata_contig71536.14823.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig71536:185..364- (Himanthalia elongata Himel1 dioecious)
GCAGTGACGTCATCGAAGTCGAGGTCGGCGCTGCTGGAGTTCATCGCGCG
GCCCTCCGAGGAGCGACACTTCGACCCCATGTACGCGCTGAGGCTGTGCG
CGCAGCACGGGCGTTCCCTGGCAATGGTGCACCTGTATTCTGCCATGGGG
CTGTGGGAGGAGGCGGTGGATCTCGCCCTT
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Coding sequence (CDS) from alignment at H-elongata_contig71536:185..364-

>mRNA_H-elongata_contig71536.14823.1 ID=mRNA_H-elongata_contig71536.14823.1|Name=mRNA_H-elongata_contig71536.14823.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig71536:185..364- (Himanthalia elongata Himel1 dioecious)
GCAGTGACGTCATCGAAGTCGAGGTCGGCGCTGCTGGAGTTCATCGCGCG
GCCCTCCGAGGAGCGACACTTCGACCCCATGTACGCGCTGAGGCTGTGCG
CGCAGCACGGGCGTTCCCTGGCAATGGTGCACCTGTATTCTGCCATGGGG
CTGTGGGAGGAGGCGGTGGATCTCGCCCTTGCAGTGACGTCATCGAAGTC
GAGGTCGGCGCTGCTGGAGTTCATCGCGCGGCCCTCCGAGGAGCGACACT
TCGACCCCATGTACGCGCTGAGGCTGTGCGCGCAGCACGGGCGTTCCCTG
GCAATGGTGCACCTGTATTCTGCCATGGGGCTGTGGGAGGAGGCGGTGGA
TCTCGCCCTT
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