mRNA_H-elongata_contig71529.14819.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71529.14819.1
Unique NamemRNA_H-elongata_contig71529.14819.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71529.14819.1 vs. uniprot
Match: D8LES7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES7_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.660e-29
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 MDTFELMRSAYFTRGSTSLPDLHEPVPRIEENFYMWLACRKEQWRKHRTDKRASRQLTPEEDFP 192
            +DT ELMRSAYF RGS+SLPD+ EPVP+IE+NFYMWL+ RK+QWRKHR DKR  R+LTPEEDFP
Sbjct:   74 LDTIELMRSAYFARGSSSLPDVSEPVPKIEDNFYMWLSLRKQQWRKHRRDKRVGRKLTPEEDFP 137
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BLAST of mRNA_H-elongata_contig71529.14819.1 vs. uniprot
Match: A0A6H5KM78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM78_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.170e-25
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 MDTFELMRSAYFTRGSTSLPDLHEPVPRIEENFYMWLACRKEQWRKHRTDKRASRQLTPEE 183
            +DT ELMRSAYF RGS+SLPD+ EPVP+IE+NFYMWL+ RK+QWRKHR DKRA R+LTPEE
Sbjct:   74 LDTIELMRSAYFARGSSSLPDVSEPVPKIEDNFYMWLSLRKQQWRKHRRDKRAGRKLTPEE 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71529.14819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LES7_ECTSI1.660e-2976.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM78_9PHAE1.170e-2577.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71529contigH-elongata_contig71529:329..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_005420.1
Exons1
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931116.2836392-CDS-H-elongata_contig71529:328..5231622931116.2836392-CDS-H-elongata_contig71529:328..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71529 329..523 +
1691679704.912493-CDS-H-elongata_contig71529:328..5231691679704.912493-CDS-H-elongata_contig71529:328..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71529 329..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71529.14819.1prot_H-elongata_contig71529.14819.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71529 329..523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71529.14819.1

>prot_H-elongata_contig71529.14819.1 ID=prot_H-elongata_contig71529.14819.1|Name=mRNA_H-elongata_contig71529.14819.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MDTFELMRSAYFTRGSTSLPDLHEPVPRIEENFYMWLACRKEQWRKHRTD
KRASRQLTPEEDFPR
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mRNA from alignment at H-elongata_contig71529:329..523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71529.14819.1 ID=mRNA_H-elongata_contig71529.14819.1|Name=mRNA_H-elongata_contig71529.14819.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig71529:329..523+ (Himanthalia elongata Himel1 dioecious)
ATGGACACCTTCGAGCTCATGCGGTCGGCGTACTTCACGAGGGGCTCCAC
CAGCCTGCCCGACCTCCACGAGCCGGTGCCCCGAATAGAAGAAAATTTCT
ACATGTGGCTCGCCTGTCGCAAGGAGCAGTGGCGGAAGCACCGGACGGAC
AAACGGGCGAGTCGGCAGCTCACTCCAGAGGAAGATTTCCCAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig71529:329..523+

>mRNA_H-elongata_contig71529.14819.1 ID=mRNA_H-elongata_contig71529.14819.1|Name=mRNA_H-elongata_contig71529.14819.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig71529:329..523+ (Himanthalia elongata Himel1 dioecious)
ATGGACACCTTCGAGCTCATGCGGTCGGCGTACTTCACGAGGGGCTCCAC
CAGCCTGCCCGACCTCCACGAGCCGGTGCCCCGAATAGAAGAAAATTTCT
ACATGTGGCTCGCCTGTCGCAAGGAGCAGTGGCGGAAGCACCGGACGGAC
AAACGGGCGAGTCGGCAGCTCACTCCAGAGGAAGATTTCCCAAGGATGGA
CACCTTCGAGCTCATGCGGTCGGCGTACTTCACGAGGGGCTCCACCAGCC
TGCCCGACCTCCACGAGCCGGTGCCCCGAATAGAAGAAAATTTCTACATG
TGGCTCGCCTGTCGCAAGGAGCAGTGGCGGAAGCACCGGACGGACAAACG
GGCGAGTCGGCAGCTCACTCCAGAGGAAGATTTCCCAAGG
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