mRNA_H-elongata_contig71522.14816.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71522.14816.1
Unique NamemRNA_H-elongata_contig71522.14816.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71522.14816.1 vs. uniprot
Match: A0A8H3LT90_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3LT90_9GLOM)

HSP 1 Score: 68.6 bits (166), Expect = 1.180e-12
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   88 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKDRNRLSIERLELLMRISL 243
            FPN+ KL+++   +P SSVECERGFS QN+IK+KDRN L+   L++LMR+SL
Sbjct:   86 FPNIIKLIQIVYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMRVSL 137
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BLAST of mRNA_H-elongata_contig71522.14816.1 vs. uniprot
Match: UPI001C155DC1 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C155DC1)

HSP 1 Score: 66.2 bits (160), Expect = 5.050e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   88 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKDRNRLSIERLELLMRISL 243
            FPN+ KL++L   +P SSVECERGFS QN+IK+K RN L+ + L+ LMRISL
Sbjct:   56 FPNIIKLIQLVYCIPFSSVECERGFSRQNQIKTKSRNSLTTDTLDRLMRISL 107
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BLAST of mRNA_H-elongata_contig71522.14816.1 vs. uniprot
Match: C3Z810_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z810_BRAFL)

HSP 1 Score: 66.6 bits (161), Expect = 5.520e-11
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    1 LTREDRSEILQKLWVHFWRTVHGNPGGAHFPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKDRNRLSIERLELLMRISL 243
            L RED +     +W    R VHG+     FPN+ KL  +  +LP  + +CERGFS QNRIK++ RN LS++RL++LMRI++
Sbjct:  289 LRREDDTLTTDTMWKELER-VHGSE---LFPNLLKLATVGRLLPMHTADCERGFSTQNRIKTRLRNALSVKRLDILMRIAI 365
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BLAST of mRNA_H-elongata_contig71522.14816.1 vs. uniprot
Match: A0A015J8B3_RHIIW (Uncharacterized protein n=13 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015J8B3_RHIIW)

HSP 1 Score: 65.5 bits (158), Expect = 1.360e-10
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   88 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKDRNRLSIERLELLMRISL 243
            FPN+ KL+++   +P SSVECERGFS QN+IK+KDRN L+   L++LM ISL
Sbjct:  544 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 595
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BLAST of mRNA_H-elongata_contig71522.14816.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353)

HSP 1 Score: 65.5 bits (158), Expect = 1.390e-10
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   88 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKDRNRLSIERLELLMRISL 243
            FPN+ KL+++   +P SSVECERGFS QN+IK+KDRN L+   L++LM ISL
Sbjct:  614 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 665
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BLAST of mRNA_H-elongata_contig71522.14816.1 vs. uniprot
Match: A0A3B1J4P0_ASTMX (TTF-type domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J4P0_ASTMX)

HSP 1 Score: 63.9 bits (154), Expect = 4.760e-10
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   16 RSEILQKLWVHFWRTVHGN-PGGAHFPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKDRNRLSIERLELLMRIS 240
            + + + K +   W  +    P  + F N++ L ++ +VLP S+ +CERGFSAQNRIKSK RN L++  +E L+RIS
Sbjct:  530 KGQFMDKSYSGLWEVMLSKEPYCSDFQNIFHLAEIMLVLPISAAQCERGFSAQNRIKSKVRNSLNVSTVEDLVRIS 605
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BLAST of mRNA_H-elongata_contig71522.14816.1 vs. uniprot
Match: A0A2Z6RJ54_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RJ54_9GLOM)

HSP 1 Score: 62.8 bits (151), Expect = 6.480e-10
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   88 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKDRNRLSIERLELLMRISL 243
            F N+ KL++L   +P SSVECERGFS QN+IK+K+RN L+ + L+ LMRISL
Sbjct:  171 FLNIIKLIQLIYCIPFSSVECERGFSRQNQIKTKNRNSLTTDTLDRLMRISL 222
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BLAST of mRNA_H-elongata_contig71522.14816.1 vs. uniprot
Match: A0A535FQV7_9CHLR (HAT transposon family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535FQV7_9CHLR)

HSP 1 Score: 57.4 bits (137), Expect = 6.030e-9
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  103 KLVKLYIVLPHSSVECERGFSAQNRIKSKDRNRLSIERLELLMRIS 240
            +L ++  VLP +SVECERGFS  NRIK+ DRNRL  E LE LMRIS
Sbjct:    8 RLCQMVAVLPATSVECERGFSNLNRIKTDDRNRLQPEHLEYLMRIS 53
[Close]
BLAST of mRNA_H-elongata_contig71522.14816.1 vs. uniprot
Match: A0A8H3QWN6_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3QWN6_9GLOM)

HSP 1 Score: 59.3 bits (142), Expect = 8.020e-9
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   88 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKDRNRLSIERLELLMRISL 243
            F N+ KL+++   +P SSVECE GFS QN+IK+KDRN L+   L+LLM + L
Sbjct:  128 FLNIIKLIQIVYCIPFSSVECEHGFSRQNKIKTKDRNSLATNMLDLLMHVFL 179
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BLAST of mRNA_H-elongata_contig71522.14816.1 vs. uniprot
Match: UPI0011C0D78D (zinc finger protein 862-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C0D78D)

HSP 1 Score: 57.4 bits (137), Expect = 1.200e-8
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   70 NPGGAHFPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKDRNRLSIERLELLMRISL 243
            +P    + N+ +LV + +VLP S+ +CERGFSAQNRIK+  R+ L++   E LMRISL
Sbjct:   31 DPYKTDYRNILELVMIMLVLPISAAQCERGFSAQNRIKTSTRSSLAVSTTEDLMRISL 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71522.14816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H3LT90_9GLOM1.180e-1259.62Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
UPI001C155DC15.050e-1261.54Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
C3Z810_BRAFL5.520e-1145.68Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
A0A015J8B3_RHIIW1.360e-1059.62Uncharacterized protein n=13 Tax=Rhizophagus irreg... [more]
UPI001C19C3531.390e-1059.62Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A3B1J4P0_ASTMX4.760e-1042.11TTF-type domain-containing protein n=1 Tax=Astyana... [more]
A0A2Z6RJ54_9GLOM6.480e-1059.62Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
A0A535FQV7_9CHLR6.030e-965.22HAT transposon family protein n=1 Tax=Chloroflexi ... [more]
A0A8H3QWN6_9GLOM8.020e-953.85Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
UPI0011C0D78D1.200e-850.00zinc finger protein 862-like n=1 Tax=Sparus aurata... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71522contigH-elongata_contig71522:1179..1421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.4
Seed ortholog evalue3.5e-09
Seed eggNOG ortholog7739.XP_002595312.1
Preferred nameNUP188
KEGG koko:K14311
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0001667,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006996,GO:0006997,GO:0006999,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0010631,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016032,GO:0016043,GO:0016477,GO:0017038,GO:0017056,GO:0031503,GO:0031967,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0040011,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044611,GO:0045184,GO:0046907,GO:0048870,GO:0050657,GO:0050658,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0090130,GO:0090132,GO:0090521
EggNOG free text desc.Nucleoporin NUP188 homolog
EggNOG OGs38ETV@33154,3BES7@33208,3CZUR@33213,483SU@7711,KOG4833@1,KOG4833@2759
COG Functional cat.Q
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931116.1135044-CDS-H-elongata_contig71522:1178..14211622931116.1135044-CDS-H-elongata_contig71522:1178..1421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71522 1179..1421 +
1691679704.8593776-CDS-H-elongata_contig71522:1178..14211691679704.8593776-CDS-H-elongata_contig71522:1178..1421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71522 1179..1421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71522.14816.1prot_H-elongata_contig71522.14816.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71522 1179..1421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71522.14816.1

>prot_H-elongata_contig71522.14816.1 ID=prot_H-elongata_contig71522.14816.1|Name=mRNA_H-elongata_contig71522.14816.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
LTREDRSEILQKLWVHFWRTVHGNPGGAHFPNVYKLVKLYIVLPHSSVEC
ERGFSAQNRIKSKDRNRLSIERLELLMRISL
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mRNA from alignment at H-elongata_contig71522:1179..1421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71522.14816.1 ID=mRNA_H-elongata_contig71522.14816.1|Name=mRNA_H-elongata_contig71522.14816.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig71522:1179..1421+ (Himanthalia elongata Himel1 dioecious)
TTGACACGAGAGGACAGGAGTGAGATCTTACAGAAGCTATGGGTGCACTT
TTGGCGTACCGTCCATGGTAATCCAGGAGGAGCGCACTTTCCCAACGTGT
ACAAGCTCGTAAAGCTCTACATCGTGCTCCCGCACTCTTCGGTTGAATGC
GAGCGGGGCTTCTCCGCGCAAAATCGCATCAAGTCGAAAGACCGGAACCG
GCTGTCAATTGAGAGACTGGAACTGCTCATGCGCATATCGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig71522:1179..1421+

>mRNA_H-elongata_contig71522.14816.1 ID=mRNA_H-elongata_contig71522.14816.1|Name=mRNA_H-elongata_contig71522.14816.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig71522:1179..1421+ (Himanthalia elongata Himel1 dioecious)
TTGACACGAGAGGACAGGAGTGAGATCTTACAGAAGCTATGGGTGCACTT
TTGGCGTACCGTCCATGGTAATCCAGGAGGAGCGCACTTTCCCAACGTGT
ACAAGCTCGTAAAGCTCTACATCGTGCTCCCGCACTCTTCGGTTGAATGC
GAGCGGGGCTTCTCCGCGCAAAATCGCATCAAGTCGAAAGACCGGAACCG
GCTGTCAATTGAGAGACTGGAACTGCTCATGCGCATATCGTTGTTGACAC
GAGAGGACAGGAGTGAGATCTTACAGAAGCTATGGGTGCACTTTTGGCGT
ACCGTCCATGGTAATCCAGGAGGAGCGCACTTTCCCAACGTGTACAAGCT
CGTAAAGCTCTACATCGTGCTCCCGCACTCTTCGGTTGAATGCGAGCGGG
GCTTCTCCGCGCAAAATCGCATCAAGTCGAAAGACCGGAACCGGCTGTCA
ATTGAGAGACTGGAACTGCTCATGCGCATATCGTTG
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