mRNA_H-elongata_contig71498.14812.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71498.14812.1
Unique NamemRNA_H-elongata_contig71498.14812.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71498.14812.1 vs. uniprot
Match: D7G3J7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J7_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.120e-37
Identity = 63/106 (59.43%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:   10 QRPHGCLDKTCESDCRRGFRCYTNQXXXXXVHPDLCHSNRGTVTCRCK-DGKIGNGHKCPGETPKIYKDANGNLLPLGLDASTVCGCQEPVLDLCHDVTCGKHASC 324
            +RP+GC DKTC  DCRR FRCYT+Q     V+PD C S+RG VTC C+ + ++GNGH CPGETP++  DA+G  L   LD S VCGCQ P +DLCHDV+CG+HA+C
Sbjct:  184 KRPNGCRDKTCSHDCRRDFRCYTDQCEGKCVYPDSCKSSRGMVTCACQNESEVGNGHVCPGETPEVLTDASGAFLA-DLDPSKVCGCQVPKVDLCHDVSCGQHATC 288
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71498.14812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3J7_ECTSI1.120e-3759.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71498contigH-elongata_contig71498:217..2374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.8e-32
Seed eggNOG ortholog2880.D7G3J7
EggNOG free text desc.EGF domain, unclasssified subfamily
EggNOG OGs2A3HA@1,2RY5A@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size324
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71498.14812.1prot_H-elongata_contig71498.14812.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71498 217..2374 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931115.8156884-CDS-H-elongata_contig71498:216..3301622931115.8156884-CDS-H-elongata_contig71498:216..330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71498 217..330 -
1691679704.6619694-CDS-H-elongata_contig71498:216..3301691679704.6619694-CDS-H-elongata_contig71498:216..330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71498 217..330 -
1622931115.827347-CDS-H-elongata_contig71498:1035..11201622931115.827347-CDS-H-elongata_contig71498:1035..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71498 1036..1120 -
1691679704.6730602-CDS-H-elongata_contig71498:1035..11201691679704.6730602-CDS-H-elongata_contig71498:1035..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71498 1036..1120 -
1622931115.840076-CDS-H-elongata_contig71498:2249..23741622931115.840076-CDS-H-elongata_contig71498:2249..2374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71498 2250..2374 -
1691679704.6856825-CDS-H-elongata_contig71498:2249..23741691679704.6856825-CDS-H-elongata_contig71498:2249..2374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71498 2250..2374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71498.14812.1

>prot_H-elongata_contig71498.14812.1 ID=prot_H-elongata_contig71498.14812.1|Name=mRNA_H-elongata_contig71498.14812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MLRQRPHGCLDKTCESDCRRGFRCYTNQCEGKCVHPDLCHSNRGTVTCRC
KDGKIGNGHKCPGETPKIYKDANGNLLPLGLDASTVCGCQEPVLDLCHDV
TCGKHASC
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mRNA from alignment at H-elongata_contig71498:217..2374-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71498.14812.1 ID=mRNA_H-elongata_contig71498.14812.1|Name=mRNA_H-elongata_contig71498.14812.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2158bp|location=Sequence derived from alignment at H-elongata_contig71498:217..2374- (Himanthalia elongata Himel1 dioecious)
ATGTTACGGCAGAGGCCTCATGGATGCCTCGATAAGACGTGCGAAAGCGA
TTGCCGCAGAGGATTCCGGTGCTACACCAACCAATGCGAGGGGAAGTGTG
TTCACCCGGATCTCTGCCACAGCAAGTGAGGCCTTTTCCTTTTTCCATAT
TTTTTCTCTTGTATGTATATAGGTCTATGTATCAAGTGAGTTCTTTTCCA
TTTTTATATATATTATTCATACCAAGTATTGTTTTTCTCGTATATATATA
TATATATATATATATGTAAATATTGATGTATATATATATAGTATATATTT
ATTTCTCTTCATTTTTTCTCTCTTTCTTTTATGTTTTTGTTTTCTTTTTT
CCTCTCCTTTCTCCCCATGTTTCTCTGTTTTTAGTTTTGTTTTTGGTAAT
TGTGATTATATTATATTATATATATTATCTTTACATACCGATCACCTTTC
GAAATTGACGAATCGTCTTGGAGATGGTACCGATCACTATCCCCTATCCC
ACCCCCCTGCCTCGCAGGAAATAAGCTTATCAGGGTAGATTAAGCCGTAT
GGAGACCACGTGTCATCATCCTAACAATGCCGAGACGGAGCGATATAGTG
CCGGGTTTTCGCCGACCAGGCTGGCTGCGTTTCACAAGGATTATACTAGC
CAACCTTTAGTCAATCATGTCATCATCCTTAGGTTTGCTGCGCCAAATCG
GACATGACATGGGTTCATTGGACACTATTAGACACTATTATAGACACTCG
ACACACCGGGTATATACTATATATATATTATACTATGCTCTAGTCAAATG
GTGCACATTTAGCGGGCGCGACTATATATTTTCTAGTATATATTTTGACC
CGTTTGAGTGGTGAAATATTTGAACGGTGGGGTATAATGATTATGTTTGG
GGCTAATGTACTCGAAAGAATCACCCGACTTGCCCTTGCCTTAGTTATGT
AGTGAAAACCAGTCGGCAGCCAAGAGCCATCTACTCTACTGATGAAACTA
TTTTGCTCTCCCTTCCTCTTCTCTCCCCTTGTGAGATATCCCACTCTCTA
GAATAAAATCTCTCTATCTCCGTTCCCTCTTCCCTTGTGAAACATCCCAC
TCTCCAGAAGCATTTTTTTAAATCTTTCTCCGTCCCTCTCCCCACATACC
TCCCCTTATGAAGCATCCCACTCTCAAGAAGACAAAACCCTCCCTTTCTT
TCCGCCCTCCTCTCCCCCTCCCTCTTCACCCTTGCGAAAACATGCCTCCG
CCAGTCGAGGGACAGTGACTTGCCGCTGCAAGGACGGGAAGATTGGGAAC
GGTCACAAGTGTCCCGGGGAGACGCCCAAGATCTACAAGGTGATAAGGCC
TGATCCGTTGATTTCCGTTTCCTTCTTTTGAGACCATTCTAATGGGGCGG
GATTGCTGATGAACACCTGACACGTCTAACTCTGTGCCTGCCCTTGAGTT
CTTCAGCAGCGAAGACAGTGTGAATCAATCAACCAATCAAAATCGATATG
TGGGGTGGGGTGGCGGGAGGGGAGAGGGAAGAAGAAAGAAGGGGAAGGAC
AAACGAAAATAGAAGTCTTTTAAGAAGCGATACCTGGTAGCGTCCGAGAA
TCCCGACACGGCCACCAGCATTTTCGATTGCGCTCTGATTGCTTGCCTGA
TGTGTGTGGGTACGCGTCGCCATTTCTAAAAGTTTTTTTTCTTCTTGTTT
TTTTGGGGAGGGGTTCCGTACCGCCGCTACTGTCGCCGTCAGGAGTCCAA
TTGGTTTAGTTTTAGTGGAAGTCGGGCCGCTGCCTCTACTTTAGAGCGCT
TTGTTTTGGCTGAGTCGTGGCGTTACTCGACTCGCTTCTGCCTTTCTTTT
TTCCATGCCTTTTTCTTACACATATATTTTCATGCAATTTTTCGTCGCCT
TTTTCTCTCGTTTCCTCTTTTGTCCTTTTTTCCCTTCCGTTCTTTTTTTC
TCCTTTTTTCTTTTTCTCCCCTTTTTCATCCGTTCGTCTCGTTTCGTTTC
GTTTCGTTTCGTATTTCTTCACCGAAACCGTTACACGACACCAGGACGCG
AACGGTAACCTACTACCTCTGGGCTTGGACGCCTCTACTGTGTGTGGATG
CCAAGAGCCCGTCCTGGACTTATGCCATGACGTCACCTGCGGAAAACACG
CCTCGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig71498:217..2374-

>mRNA_H-elongata_contig71498.14812.1 ID=mRNA_H-elongata_contig71498.14812.1|Name=mRNA_H-elongata_contig71498.14812.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig71498:217..2374- (Himanthalia elongata Himel1 dioecious)
ATGTTACGGCAGAGGCCTCATGGATGCCTCGATAAGACGTGCGAAAGCGA
TTGCCGCAGAGGATTCCGGTGCTACACCAACCAATGCGAGGGGAAGTGTG
TTCACCCGGATCTCTGCCACAGCAAATGTTACGGCAGAGGCCTCATGGAT
GCCTCGATAAGACGTGCGAAAGCGATTGCCGCAGAGGATTCCGGTGCTAC
ACCAACCAATGCGAGGGGAAGTGTGTTCACCCGGATCTCTGCCACAGCAA
TCGAGGGACAGTGACTTGCCGCTGCAAGGACGGGAAGATTGGGAACGGTC
ACAAGTGTCCCGGGGAGACGCCCAAGATCTACAAGTCGAGGGACAGTGAC
TTGCCGCTGCAAGGACGGGAAGATTGGGAACGGTCACAAGTGTCCCGGGG
AGACGCCCAAGATCTACAAGGACGCGAACGGTAACCTACTACCTCTGGGC
TTGGACGCCTCTACTGTGTGTGGATGCCAAGAGCCCGTCCTGGACTTATG
CCATGACGTCACCTGCGGAAAACACGCCTCGTGCGACGCGAACGGTAACC
TACTACCTCTGGGCTTGGACGCCTCTACTGTGTGTGGATGCCAAGAGCCC
GTCCTGGACTTATGCCATGACGTCACCTGCGGAAAACACGCCTCGTGC
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