mRNA_H-elongata_contig71380.14800.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71380.14800.1
Unique NamemRNA_H-elongata_contig71380.14800.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71380.14800.1 vs. uniprot
Match: A0A6H5L662_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L662_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.400e-18
Identity = 39/72 (54.17%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:   22 AWEAYLEGTDEATILADGEVASPSESTVYEIDLEEPLVQVLVDIVDEGAYALFIEHGSDEVSVVVTSPEGVV 237
            AW+AY  G ++AT+LA GE A+PS   VY++ LE+PLV V V++   GAYA+F+EHG++EV +V+ SP GVV
Sbjct:   92 AWDAYTSGAEDATVLAPGEPATPSTVVVYQVALEDPLVLVQVEVTIAGAYAVFLEHGAEEVGIVLASPSGVV 163
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BLAST of mRNA_H-elongata_contig71380.14800.1 vs. uniprot
Match: A0A6H5KN39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN39_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.640e-15
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   22 AWEAYLEGTDEATILADGEVASPSESTVYEIDLEEPLVQVLVDIVDEGAYALFIEHGSDEVSVVVTSPEGVVLIAGAEEGGED 270
            AW+A+++G ++AT+LA GE A P  + VY+  L+E +V V  ++ D GAYAL +EHG  EVS  + SP G  + A   EG E+
Sbjct:   93 AWDAFMDGEEDATVLAFGETAIPDATVVYQTTLDESIVVVPAEVTDAGAYALLLEHGGGEVSTALVSPSGTAVAASVSEGMEE 175
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BLAST of mRNA_H-elongata_contig71380.14800.1 vs. uniprot
Match: D7FLW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLW4_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.720e-14
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   22 AWEAYLEGTDEATILADGEVASPSESTVYEIDLEEPLVQVLVDIVDEGAYALFIEHGSDE 201
            AW+ Y  G ++AT+LA GE A+PS   VY++ LE+PLV V VD+   GAYA+F+EHGSDE
Sbjct:   98 AWDEYTSGAEDATVLASGESATPSADVVYQVTLEDPLVLVPVDVTAAGAYAVFLEHGSDE 157
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BLAST of mRNA_H-elongata_contig71380.14800.1 vs. uniprot
Match: D7FRW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW4_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 6.890e-14
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:   22 AWEAYLEGTDEATILADGEVASPSESTVYEIDLEEPLVQVLVDIVDEGAYALFIEHGSDEVSVVVTSPEGVVLIAGAEEGGEDDED 279
            AW+A+++G ++AT+LA GE   P  + VY+  L+E ++ V  ++ D GAYAL +EHG  EVS  + SP G  + A   E  +++E+
Sbjct:  105 AWDAFMDGEEDATVLASGETVIPDATVVYQTTLDESIIVVPAEVTDAGAYALLLEHGGGEVSTALISPLGTAVAASVSEFMDEEEE 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71380.14800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L662_9PHAE8.400e-1854.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN39_9PHAE1.640e-1544.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLW4_ECTSI2.720e-1456.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRW4_ECTSI6.890e-1439.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71380contigH-elongata_contig71380:2239..2574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D7FRW4
EggNOG free text desc.cellular zinc ion homeostasis
EggNOG OGsCOG0428@1,KOG2693@2759
Ec32 ortholog descriptionZinc/iron permease
Ec32 orthologEc-26_001450.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931114.2777672-CDS-H-elongata_contig71380:2238..25741622931114.2777672-CDS-H-elongata_contig71380:2238..2574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71380 2239..2574 -
1691679703.979544-CDS-H-elongata_contig71380:2238..25741691679703.979544-CDS-H-elongata_contig71380:2238..2574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71380 2239..2574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71380.14800.1prot_H-elongata_contig71380.14800.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71380 2239..2574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71380.14800.1

>prot_H-elongata_contig71380.14800.1 ID=prot_H-elongata_contig71380.14800.1|Name=mRNA_H-elongata_contig71380.14800.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
LFRLPPTAWEAYLEGTDEATILADGEVASPSESTVYEIDLEEPLVQVLVD
IVDEGAYALFIEHGSDEVSVVVTSPEGVVLIAGAEEGGEDDEDHDDEDHD
DEDHDDHDDEDE
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mRNA from alignment at H-elongata_contig71380:2239..2574-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71380.14800.1 ID=mRNA_H-elongata_contig71380.14800.1|Name=mRNA_H-elongata_contig71380.14800.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig71380:2239..2574- (Himanthalia elongata Himel1 dioecious)
CTCTTCCGTTTACCCCCGACAGCGTGGGAGGCCTACCTGGAAGGCACGGA
TGAAGCCACCATCCTGGCCGATGGCGAAGTGGCGTCACCCTCAGAATCGA
CGGTGTACGAGATTGATCTCGAGGAGCCCCTCGTCCAAGTACTCGTGGAC
ATTGTTGACGAGGGCGCTTACGCCCTCTTTATCGAGCACGGGTCGGACGA
GGTGTCCGTGGTGGTCACCTCTCCAGAAGGCGTCGTGCTTATTGCTGGAG
CAGAGGAAGGGGGCGAGGACGACGAAGACCACGACGACGAAGACCACGAT
GACGAAGATCACGACGATCACGACGATGAGGATGAG
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Coding sequence (CDS) from alignment at H-elongata_contig71380:2239..2574-

>mRNA_H-elongata_contig71380.14800.1 ID=mRNA_H-elongata_contig71380.14800.1|Name=mRNA_H-elongata_contig71380.14800.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig71380:2239..2574- (Himanthalia elongata Himel1 dioecious)
CTCTTCCGTTTACCCCCGACAGCGTGGGAGGCCTACCTGGAAGGCACGGA
TGAAGCCACCATCCTGGCCGATGGCGAAGTGGCGTCACCCTCAGAATCGA
CGGTGTACGAGATTGATCTCGAGGAGCCCCTCGTCCAAGTACTCGTGGAC
ATTGTTGACGAGGGCGCTTACGCCCTCTTTATCGAGCACGGGTCGGACGA
GGTGTCCGTGGTGGTCACCTCTCCAGAAGGCGTCGTGCTTATTGCTGGAG
CAGAGGAAGGGGGCGAGGACGACGAAGACCACGACGACGAAGACCACGAT
GACGAAGATCACGACGATCACGACGATGAGGATGAGCTCTTCCGTTTACC
CCCGACAGCGTGGGAGGCCTACCTGGAAGGCACGGATGAAGCCACCATCC
TGGCCGATGGCGAAGTGGCGTCACCCTCAGAATCGACGGTGTACGAGATT
GATCTCGAGGAGCCCCTCGTCCAAGTACTCGTGGACATTGTTGACGAGGG
CGCTTACGCCCTCTTTATCGAGCACGGGTCGGACGAGGTGTCCGTGGTGG
TCACCTCTCCAGAAGGCGTCGTGCTTATTGCTGGAGCAGAGGAAGGGGGC
GAGGACGACGAAGACCACGACGACGAAGACCACGATGACGAAGATCACGA
CGATCACGACGATGAGGATGAG
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