mRNA_H-elongata_contig71273.14791.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71273.14791.1
Unique NamemRNA_H-elongata_contig71273.14791.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig71273.14791.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 1.480e-69
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAGDKK+ NKR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_H-elongata_contig71273.14791.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 196 bits (499), Expect = 6.100e-63
Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAGDK K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_H-elongata_contig71273.14791.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 193 bits (490), Expect = 9.440e-62
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGD-KKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA D KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_H-elongata_contig71273.14791.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 192 bits (487), Expect = 2.790e-61
Identity = 102/118 (86.44%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKANK--RIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKK G+K K  K  RIESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_H-elongata_contig71273.14791.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 191 bits (486), Expect = 3.380e-61
Identity = 99/116 (85.34%), Postives = 111/116 (95.69%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKKAG K+  NKR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_H-elongata_contig71273.14791.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 193 bits (490), Expect = 6.400e-60
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGD-KKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA D KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_H-elongata_contig71273.14791.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 187 bits (474), Expect = 2.430e-59
Identity = 98/116 (84.48%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+SAKAPKKA    K+ KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_H-elongata_contig71273.14791.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 9.550e-58
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+A APKKAG K+ + KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_H-elongata_contig71273.14791.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 182 bits (462), Expect = 1.870e-57
Identity = 100/120 (83.33%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKAPKKA--GDKKK-ANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK++ AKA KKA  GDKKK + KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
[Close]
BLAST of mRNA_H-elongata_contig71273.14791.1 vs. uniprot
Match: W7TEP7_9STRA (Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEP7_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.390e-56
Identity = 94/116 (81.03%), Postives = 104/116 (89.66%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAG   K   R+ESY SYIYKVLKQVHPDTGISKRG+SI+NSFI D+F+R+A E+GKL RY KK+TLSSRE+QTAVRL LPGELAKHAVSEGTKAVTK+TSS
Sbjct:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71273.14791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI1.480e-6997.41Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA6.100e-6387.93Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA9.440e-6288.89Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA2.790e-6186.44Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
H2B_OLILU3.380e-6185.34Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A836CJT3_9STRA6.400e-6088.89Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
B7FWR8_PHATC2.430e-5984.48Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA9.550e-5884.48Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B8BX20_THAPS1.870e-5783.33Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
W7TEP7_9STRA1.390e-5681.03Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71273contigH-elongata_contig71273:2205..2555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.9
Seed ortholog evalue2e-53
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931113.0383494-CDS-H-elongata_contig71273:2204..25551622931113.0383494-CDS-H-elongata_contig71273:2204..2555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71273 2205..2555 +
1691679703.4342947-CDS-H-elongata_contig71273:2204..25551691679703.4342947-CDS-H-elongata_contig71273:2204..2555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71273 2205..2555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71273.14791.1prot_H-elongata_contig71273.14791.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71273 2205..2555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71273.14791.1

>prot_H-elongata_contig71273.14791.1 ID=prot_H-elongata_contig71273.14791.1|Name=mRNA_H-elongata_contig71273.14791.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
back to top

mRNA from alignment at H-elongata_contig71273:2205..2555+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71273.14791.1 ID=mRNA_H-elongata_contig71273.14791.1|Name=mRNA_H-elongata_contig71273.14791.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig71273:2205..2555+ (Himanthalia elongata Himel1 dioecious)
ATGGCTAAGACTCCCTCCAAGAAGTCCGCTAAGGCACCCAAGAAGGCCGG
CGACAAGAAAAAGGCAAATAAGAGAATCGAGTCGTACTCTTCGTACATCT
ACAAGGTGCTCAAGCAAGTCCACCCGGACACCGGCATCTCAAAGCGTGGC
ATGTCCATCATGAACTCGTTTATCAACGACGTGTTCGAGCGCGTTGCCGG
AGAATCTGGCAAGCTTACTCGCTACAACAAAAAGGCTACCCTTTCTTCAC
GCGAGGTACAGACCGCTGTCCGACTTATGCTCCCTGGAGAGCTCGCCAAG
CACGCCGTATCCGAAGGTACGAAAGCCGTGACAAAGTTCACCTCATCCTG
A
back to top

Coding sequence (CDS) from alignment at H-elongata_contig71273:2205..2555+

>mRNA_H-elongata_contig71273.14791.1 ID=mRNA_H-elongata_contig71273.14791.1|Name=mRNA_H-elongata_contig71273.14791.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig71273:2205..2555+ (Himanthalia elongata Himel1 dioecious)
ATGGCTAAGACTCCCTCCAAGAAGTCCGCTAAGGCACCCAAGAAGGCCGG
CGACAAGAAAAAGGCAAATAAGAGAATCGAGTCGTACTCTTCGTACATCT
ACAAGGTGCTCAAGCAAGTCCACCCGGACACCGGCATCTCAAAGCGTGGC
ATGTCCATCATGAACTCGTTTATCAACGACGTGTTCGAGCGCGTTGCCGG
AGAATCTGGCAAGCTTACTCGCTACAACAAAAAGGCTACCCTTTCTTCAC
GCGAGGTACAGACCGCTGTCCGACTTATGCTCCCTGGAGAGCTCGCCAAG
CACGCCGTATCCGAAGGTACGAAAGCCGTGACAAAGTTCACCTCATCCTG
AATGGCTAAGACTCCCTCCAAGAAGTCCGCTAAGGCACCCAAGAAGGCCG
GCGACAAGAAAAAGGCAAATAAGAGAATCGAGTCGTACTCTTCGTACATC
TACAAGGTGCTCAAGCAAGTCCACCCGGACACCGGCATCTCAAAGCGTGG
CATGTCCATCATGAACTCGTTTATCAACGACGTGTTCGAGCGCGTTGCCG
GAGAATCTGGCAAGCTTACTCGCTACAACAAAAAGGCTACCCTTTCTTCA
CGCGAGGTACAGACCGCTGTCCGACTTATGCTCCCTGGAGAGCTCGCCAA
GCACGCCGTATCCGAAGGTACGAAAGCCGTGACAAAGTTCACCTCATCCT
GA
back to top