mRNA_H-elongata_contig71268.14789.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71268.14789.1
Unique NamemRNA_H-elongata_contig71268.14789.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: D8LQF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF5_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.070e-59
Identity = 92/138 (66.67%), Postives = 106/138 (76.81%), Query Frame = 1
Query:    1 DLKGRERLDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPKGRYATVSEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLHDTDGAYEPGAIDYWKKLRESFGAEQTLA 414
            DLKGRERL+KFL DC L+GP RFV +TD  ILE VGSFDNLRY DLPKGRYATVSEG+ FECHLN DK+K+  +       GS      DL+ITRFLDE+G TLLS MLH  DGAYEPGA DYW KLR++FG +Q++A
Sbjct:   73 DLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGRYATVSEGKGFECHLNCDKVKSIKMVTKQSPGGSF-----DLYITRFLDEEGNTLLSAMLHGVDGAYEPGAADYWDKLRKTFGEDQSVA 205          
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: A0A835YGN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGN4_9STRA)

HSP 1 Score: 160 bits (406), Expect = 9.460e-48
Identity = 82/139 (58.99%), Postives = 98/139 (70.50%), Query Frame = 1
Query:    1 DLKGRERLDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPKGRYATVS-EGRDFECHLNTDKIKASDVCNGTLSQGSAAKD-DQDLFITRFLDEKGETLLSTMLHDTDGAYEPGAIDYWKKLRESFGAEQTL 411
            DLKG+ERL K+L DCEL+GPVRFV M D  ILE VGSF+NLR+NDL KG YAT+S +   FECHLN D++      NG       AKD   DL+ITRF+D +G+T+LS ML    G YE GA+ YW KLRE+FGAEQ L
Sbjct:   46 DLKGKERLQKYLKDCELLGPVRFVSMNDGAILEAVGSFENLRFNDLEKGTYATLSGDDEGFECHLNIDRV------NGITMLTKPAKDASHDLYITRFVDAEGKTVLSAMLQAEGGQYEEGAVAYWTKLREAFGAEQKL 178          
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: A0A6U1NZN9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NZN9_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.720e-34
Identity = 64/138 (46.38%), Postives = 94/138 (68.12%), Query Frame = 1
Query:    4 LKGRERLDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPKGRYATVSEG-RDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLH-DTDGAYEPGAIDYWKKLRESFGAEQTL 411
            L+G  RL+KF  D  L+G VRFV +TD  ILETVGS++N++ NDL KG++AT     + FECH+N D+     V   T+S  +A + D+ L+ITRF D   + +LS+MLH + +G YE G++++W++LRE FG +Q L
Sbjct:   66 LEGIPRLEKFFQDSSLLGAVRFVVVTDGAILETVGSYENMKINDLDKGKFATFKNSDKSFECHVNMDE-----VAKITMSTKNAKQGDRILYITRFYDNADKLILSSMLHPEEEGNYEDGSVEWWEQLREVFGEDQRL 198          
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: I2CRE5_NANGC (Heme utilization protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRE5_NANGC)

HSP 1 Score: 117 bits (294), Expect = 1.060e-30
Identity = 61/139 (43.88%), Postives = 86/139 (61.87%), Query Frame = 1
Query:    1 DLKGRERLDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLP-KGRYAT-VSEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLHDTDGAYEPGAIDYWKKLRESFGAEQTL 411
            DL G+ERL +FL D   +GP+RFVCM D  ILE VGSF+N+   D+P +G  AT  S+ + FE HLN D +   +     + Q  A + D D +I RF+  +G+TLLS+MLH  + AY+  A+ +W KL+  FG  Q +
Sbjct:   54 DLVGKERLKRFLEDASFLGPIRFVCMNDGGILEAVGSFENMVSKDVPGRGELATFASDDKTFEAHLNLDMVSRVE-----MRQAVAKRGDHDNYIIRFISGEGKTLLSSMLHREEEAYDEDALAWWGKLKGVFGETQEM 187          
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: A0A7S3RZZ8_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RZZ8_EMIHU)

HSP 1 Score: 103 bits (256), Expect = 5.630e-25
Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   31 FLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPKGRYATVSEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLHDTDGAYEPGAIDYWKKLRESFGA 399
            FL+D E +GP RFV   +  ILE VG+F+ LR ++ PKG  ATVS G  FECH+   ++ ++   +     G A      L I R LD++G  LLS +LH     YE GA+ ++++LRE FGA
Sbjct:   60 FLSDLEFLGPCRFVVQGEGAILEAVGAFEELRVSETPKGALATVSVGDSFECHVRLKEVASASFVSKEKPDGKA------LHIVRLLDKEGGPLLSAILHAGPDGYEDGAVSFFERLREKFGA 176          
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: R1D395_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D395_EMIHU)

HSP 1 Score: 97.8 bits (242), Expect = 2.340e-23
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   19 RLDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPKGRYATVSEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLHDTDGAYEPGAIDYWKKLRESFGA 399
            R   F    E +GP RFV   +  ILE VG+F+ LR ++ PKG  ATVS G  FECH+   ++ ++   +     G A      L I R LD++G  LLS +LH     YE GA+ ++++LRE FGA
Sbjct:   13 RASFFSPHLEFLGPCRFVVQGEGAILEAVGAFEELRVSETPKGALATVSVGDSFECHVRLKEVASASFVSKEKPDGKA------LHIVRLLDKEGGPLLSAILHAGPDGYEDGAVSFFERLREKFGA 133          
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: A0A150GY36_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GY36_GONPE)

HSP 1 Score: 92.0 bits (227), Expect = 7.080e-21
Identity = 45/122 (36.89%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   52 MGPVRFVCMTDATILETVGSFDNLRYNDLP-KGRYATV-SEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLHDTDGAYEPGAIDYWKKLRESFGAEQTL 411
            +G VRF+ + D  ILE+V  + ++RYN++P +G  AT+ S  + FECH+   K+K         ++  A   D D++ TRF  E G+ +LST+LH + GAY+P A+  W  L   +G   T 
Sbjct:   49 LGKVRFIVLGDGAILESVNDWGSVRYNEVPNRGLLATIASADKSFECHITLSKVKEV-----RFAKSKAKAGDYDIYATRFYGEDGKVMLSTILHGSQGAYDPAAVQAWTSLASKYGDSVTF 165          
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Match: UPI001C403172 (heme utilization protein HuvX n=1 Tax=Anthocerotibacter panamensis TaxID=2857077 RepID=UPI001C403172)

HSP 1 Score: 58.5 bits (140), Expect = 3.710e-8
Identity = 44/129 (34.11%), Postives = 62/129 (48.06%), Query Frame = 1
Query:   22 LDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPK-GRYATVSEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEKGETLLSTMLH-DTDGAYEPGAIDYWKKLRESFGAE 402
            L  FLADCE +G +R +   +  +LE  G  +NL Y  +P+   YA +     FE HLN   I+          QG+         I  F  E  +  LS  L     GAYEPG ++ + +LRE++GAE
Sbjct:    5 LKDFLADCESLGTLRIIVTNNTAVLEARGRMENLFY--VPRVPTYANMHNDH-FEFHLNMADIQRVKFEELPAKQGNFTT----YCIRLFKPEAEKASLSLFLQWGKPGAYEPGQVEAFIRLRETYGAE 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71268.14789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LQF5_ECTSI1.070e-5966.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGN4_9STRA9.460e-4858.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1NZN9_9STRA1.720e-3446.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
I2CRE5_NANGC1.060e-3043.88Heme utilization protein n=1 Tax=Nannochloropsis g... [more]
A0A7S3RZZ8_EMIHU5.630e-2542.28Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1D395_EMIHU2.340e-2340.16Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A150GY36_GONPE7.080e-2136.89Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
UPI001C4031723.710e-834.11heme utilization protein HuvX n=1 Tax=Anthocerotib... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71268contigH-elongata_contig71268:2016..2895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2.8e-46
Seed eggNOG ortholog2880.D8LQF5
EggNOG OGs28J5U@1,2SDH4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_005430.1
Exons3
Model size417
Cds size417
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71268.14789.1prot_H-elongata_contig71268.14789.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71268 2016..2895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931112.7216406-CDS-H-elongata_contig71268:2015..21811622931112.7216406-CDS-H-elongata_contig71268:2015..2181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71268 2016..2181 -
1691679703.269755-CDS-H-elongata_contig71268:2015..21811691679703.269755-CDS-H-elongata_contig71268:2015..2181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71268 2016..2181 -
1622931112.7450938-CDS-H-elongata_contig71268:2365..24671622931112.7450938-CDS-H-elongata_contig71268:2365..2467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71268 2366..2467 -
1691679703.279305-CDS-H-elongata_contig71268:2365..24671691679703.279305-CDS-H-elongata_contig71268:2365..2467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71268 2366..2467 -
1622931112.7658799-CDS-H-elongata_contig71268:2746..28951622931112.7658799-CDS-H-elongata_contig71268:2746..2895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71268 2747..2895 -
1691679703.2914217-CDS-H-elongata_contig71268:2746..28951691679703.2914217-CDS-H-elongata_contig71268:2746..2895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71268 2747..2895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71268.14789.1

>prot_H-elongata_contig71268.14789.1 ID=prot_H-elongata_contig71268.14789.1|Name=mRNA_H-elongata_contig71268.14789.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
DLKGRERLDKFLADCELMGPVRFVCMTDATILETVGSFDNLRYNDLPKGR
YATVSEGRDFECHLNTDKIKASDVCNGTLSQGSAAKDDQDLFITRFLDEK
GETLLSTMLHDTDGAYEPGAIDYWKKLRESFGAEQTLA*
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mRNA from alignment at H-elongata_contig71268:2016..2895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71268.14789.1 ID=mRNA_H-elongata_contig71268.14789.1|Name=mRNA_H-elongata_contig71268.14789.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=880bp|location=Sequence derived from alignment at H-elongata_contig71268:2016..2895- (Himanthalia elongata Himel1 dioecious)
GACTTGAAAGGAAGGGAGCGTCTCGATAAGTTCCTCGCCGACTGCGAGCT CATGGGCCCCGTCCGCTTCGTGTGCATGACGGACGCTACTATACTTGAGA CCGTCGGGTCTTTCGATAACCTTCGTTACAACGACCTTCCCAAGGGAAGG TAGGGCGACAACCGAGCTCTAGAGCAGGTCTTTCTTCGAGGAGTACTACT GACTCACCGAAGCGTGACAGACGCGGGGCATGACACCCTAATCGTTCGTA CTGCTTGGAAATTATAACAGTTTCTTGCTGATTCGCGATCGCCACGGGGT ATTCTTCGGTTAGTGACGAGTTTCTATGGACCTGCGTATGCGCTTTTGAT CTAACACAGGGGGGGGCATCGTCGCGAAAACTCCACTGTTTTGTTCATGA CGCCTTCACGATTTTCCGTTTCCCATAGGTACGCCACGGTTTCAGAGGGA CGAGATTTCGAATGTCACCTCAATACGGACAAAATAAAGGCAAGCGATGT CTGCAACGGGACTTTGAGTCAAGGATCCGCGTCTGCAGCCTAACGCTGCC GCACAACGAAAACAAAACGAGACATTCTTTTTTTTTGTCTGGGCTGTTAC CCTGGACTGAGGTGNNNNNNNNNNCCCCTCCCCTCCCCCCCCCCTAAAAA AAAAACTCCGCTCCGGTGTGATTTCGTTGAAACCCCAGAGCATCCATATG GTGACGAAGCGTAGCGCTAAGGATGATCAGGACCTCTTCATAACTCGCTT CCTGGACGAGAAAGGCGAGACTTTGCTCTCGACGATGCTGCACGATACGG ACGGGGCTTACGAGCCGGGAGCGATCGACTACTGGAAAAAATTGCGGGAA AGTTTTGGTGCCGAACAAACACTTGCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig71268:2016..2895-

>mRNA_H-elongata_contig71268.14789.1 ID=mRNA_H-elongata_contig71268.14789.1|Name=mRNA_H-elongata_contig71268.14789.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig71268:2016..2895- (Himanthalia elongata Himel1 dioecious)
GACTTGAAAGGAAGGGAGCGTCTCGATAAGTTCCTCGCCGACTGCGAGCT
CATGGGCCCCGTCCGCTTCGTGTGCATGACGGACGCTACTATACTTGAGA
CCGTCGGGTCTTTCGATAACCTTCGTTACAACGACCTTCCCAAGGGAAGG
ACTTGAAAGGAAGGGAGCGTCTCGATAAGTTCCTCGCCGACTGCGAGCTC
ATGGGCCCCGTCCGCTTCGTGTGCATGACGGACGCTACTATACTTGAGAC
CGTCGGGTCTTTCGATAACCTTCGTTACAACGACCTTCCCAAGGGAAGGT
ACGCCACGGTTTCAGAGGGACGAGATTTCGAATGTCACCTCAATACGGAC
AAAATAAAGGCAAGCGATGTCTGCAACGGGACTTTGAGTCAAGGATCCGC
GTACGCCACGGTTTCAGAGGGACGAGATTTCGAATGTCACCTCAATACGG
ACAAAATAAAGGCAAGCGATGTCTGCAACGGGACTTTGAGTCAAGGATCC
GCCGCTAAGGATGATCAGGACCTCTTCATAACTCGCTTCCTGGACGAGAA
AGGCGAGACTTTGCTCTCGACGATGCTGCACGATACGGACGGGGCTTACG
AGCCGGGAGCGATCGACTACTGGAAAAAATTGCGGGAAAGTTTTGGTGCC
GAACAAACACTTGCGTAACGCTAAGGATGATCAGGACCTCTTCATAACTC
GCTTCCTGGACGAGAAAGGCGAGACTTTGCTCTCGACGATGCTGCACGAT
ACGGACGGGGCTTACGAGCCGGGAGCGATCGACTACTGGAAAAAATTGCG
GGAAAGTTTTGGTGCCGAACAAACACTTGCGTAA
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