mRNA_H-elongata_contig71245.14785.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71245.14785.1
Unique NamemRNA_H-elongata_contig71245.14785.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71245.14785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71245contigH-elongata_contig71245:2600..3067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size452
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71245.14785.1prot_H-elongata_contig71245.14785.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71245 2720..2966 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931112.1922562-UTR-H-elongata_contig71245:2599..27191622931112.1922562-UTR-H-elongata_contig71245:2599..2719Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71245 2600..2719 +
1691679703.1334465-UTR-H-elongata_contig71245:2599..27191691679703.1334465-UTR-H-elongata_contig71245:2599..2719Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71245 2600..2719 +
1622931112.365008-UTR-H-elongata_contig71245:2966..30671622931112.365008-UTR-H-elongata_contig71245:2966..3067Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71245 2967..3067 +
1691679703.1593254-UTR-H-elongata_contig71245:2966..30671691679703.1593254-UTR-H-elongata_contig71245:2966..3067Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig71245 2967..3067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931112.2057147-CDS-H-elongata_contig71245:2719..28071622931112.2057147-CDS-H-elongata_contig71245:2719..2807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71245 2720..2807 +
1691679703.1430614-CDS-H-elongata_contig71245:2719..28071691679703.1430614-CDS-H-elongata_contig71245:2719..2807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71245 2720..2807 +
1622931112.3011916-CDS-H-elongata_contig71245:2823..29661622931112.3011916-CDS-H-elongata_contig71245:2823..2966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71245 2824..2966 +
1691679703.1511188-CDS-H-elongata_contig71245:2823..29661691679703.1511188-CDS-H-elongata_contig71245:2823..2966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71245 2824..2966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71245.14785.1

>prot_H-elongata_contig71245.14785.1 ID=prot_H-elongata_contig71245.14785.1|Name=mRNA_H-elongata_contig71245.14785.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MSGTRNATQNKTKYPEIPTQACLNGERFRGPSRLAFLKQSPAARWTSMFV
LPPPSDCFVCLFVLSLSREAPAYEAK*
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mRNA from alignment at H-elongata_contig71245:2600..3067+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71245.14785.1 ID=mRNA_H-elongata_contig71245.14785.1|Name=mRNA_H-elongata_contig71245.14785.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=468bp|location=Sequence derived from alignment at H-elongata_contig71245:2600..3067+ (Himanthalia elongata Himel1 dioecious)
CGGCAAAGACAAGGAACCGAAAGGGGGCAGCAGGCAAAAGAGGTTGCCTA
ATGACAGCATTGGAGTTGACTGTGAGACTCCTTTAGTAGGGAATCTTCAT
GCGTCGTGTGGCTAGTGCAAATGAGCGGTACTCGCAACGCAACGCAAAAC
AAAACAAAATACCCTGAGATACCCACACAGGCGTGCCTGAACGGTGAACG
GTTCCGCGACGAACGCCCTTACGCGTCCCTCCAGGCTGGCTTTTCTCAAG
CAGTCGCCCGCCGCACGATGGACGAGCATGTTTGTTCTACCTCCGCCTTC
CGACTGTTTTGTTTGTTTGTTTGTTTTGTCATTATCACGGGAAGCACCGG
CGTACGAAGCAAAATAGTTTCTCGTGAGACAAAAAAGTCGCTCCTTTTGA
TGTGTTGCTATATAATAACGTCGCCTCTCGCCTCACGTACATCTACACTT
TGGGCTACTGTTGCACCC
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Coding sequence (CDS) from alignment at H-elongata_contig71245:2600..3067+

>mRNA_H-elongata_contig71245.14785.1 ID=mRNA_H-elongata_contig71245.14785.1|Name=mRNA_H-elongata_contig71245.14785.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig71245:2600..3067+ (Himanthalia elongata Himel1 dioecious)
ATGAGCGGTACTCGCAACGCAACGCAAAACAAAACAAAATACCCTGAGAT
ACCCACACAGGCGTGCCTGAACGGTGAACGGTTCCGCGATGAGCGGTACT
CGCAACGCAACGCAAAACAAAACAAAATACCCTGAGATACCCACACAGGC
GTGCCTGAACGGTGAACGGTTCCGCGGTCCCTCCAGGCTGGCTTTTCTCA
AGCAGTCGCCCGCCGCACGATGGACGAGCATGTTTGTTCTACCTCCGCCT
TCCGACTGTTTTGTTTGTTTGTTTGTTTTGTCATTATCACGGGAAGCACC
GGCGTACGAAGCAAAATAGGTCCCTCCAGGCTGGCTTTTCTCAAGCAGTC
GCCCGCCGCACGATGGACGAGCATGTTTGTTCTACCTCCGCCTTCCGACT
GTTTTGTTTGTTTGTTTGTTTTGTCATTATCACGGGAAGCACCGGCGTAC
GAAGCAAAATAG
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