mRNA_H-elongata_contig7124.14784.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7124.14784.1
Unique NamemRNA_H-elongata_contig7124.14784.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7124.14784.1 vs. uniprot
Match: D7FQ99_ECTSI (Trafficking protein particle complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ99_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 8.340e-48
Identity = 81/96 (84.38%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:    1 AHSVQVAPVPSSGIEKLETDTFKLQSFQTLTGAKFVITAEAGTPDLGAVLHEIYELYTDYVLKACTNPFYELEMPIRCELFTHHLEKLIERHTASG 288
            A + QVAPVPSSGIEKLETDTFKLQSFQTLTG KFVITAEAGTPDLG VL EIYELYTDYVLK   NPFYELEMPIRCELFT +LE+LIERH+ +G
Sbjct:   44 AIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGGVLQEIYELYTDYVLK---NPFYELEMPIRCELFTLYLEELIERHSNAG 136
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BLAST of mRNA_H-elongata_contig7124.14784.1 vs. uniprot
Match: A0A835ZDL6_9STRA (Trafficking protein particle complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL6_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.380e-38
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:    1 AHSVQVAPVPSSGIEKLETDTFKLQSFQTLTGAKFVITAEAGTPDLGAVLHEIYELYTDYVLKACTNPFYELEMPIRCELFTHHLEKLIERHTAS 285
            A + QVAP+ SSGIEKLET T++L+  QTLTGAKFVITA+  TP+L  VL  IYELYTDYVLK   NPFYELEMPIRCELFT HLEKL+ER+ A+
Sbjct:   44 AIAAQVAPIASSGIEKLETATYRLRCLQTLTGAKFVITAQPNTPELEVVLQGIYELYTDYVLK---NPFYELEMPIRCELFTQHLEKLVERYNAA 135
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BLAST of mRNA_H-elongata_contig7124.14784.1 vs. uniprot
Match: K8Z5G7_NANGC (Trafficking protein particle complex subunit (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z5G7_NANGC)

HSP 1 Score: 123 bits (308), Expect = 6.510e-34
Identity = 63/94 (67.02%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:    4 HSV--QVAPVPSSGIEKLETDTFKLQSFQTLTGAKFVITAEAGTPDLGAVLHEIYELYTDYVLKACTNPFYELEMPIRCELFTHHLEKLIERHT 279
            HS+  QVAP+ SSGIEKLE D  KLQ FQ+ TG KFV+TAE GTPDL  VLH IYELY DYVLK   NPFYE++MPIRC+LF   +E+LIER++
Sbjct:   46 HSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLK---NPFYEMDMPIRCDLFQQGVERLIERNS 136
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BLAST of mRNA_H-elongata_contig7124.14784.1 vs. uniprot
Match: A0A7S2RJT7_9STRA (Trafficking protein particle complex subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJT7_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.700e-32
Identity = 63/98 (64.29%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:   13 QVAPVPSSGIEKLETDTFKLQSFQTLTGAKFVITAEAGTPDLGAVLHEIYELYTDYVLKACTNPFYELEMPIRCELFTHHLEKLIERHTASGTPGAKG 306
            Q+APV SSGIEKLETD+F L+ FQ  TG KFVITAEAGT DL  VL  +Y+ YTDYVLK   NPFYELEMPIRCELFT  + ++I+ H   G+   KG
Sbjct:   48 QIAPVVSSGIEKLETDSFVLRCFQPPTGIKFVITAEAGTQDLEVVLQRVYQAYTDYVLK---NPFYELEMPIRCELFTEAIARVIQSH---GSQTGKG 139
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BLAST of mRNA_H-elongata_contig7124.14784.1 vs. uniprot
Match: K3WRL1_GLOUD (Trafficking protein particle complex subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRL1_GLOUD)

HSP 1 Score: 114 bits (284), Expect = 2.940e-30
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    1 AHSVQVAPVPSSGIEKLETDTFKLQSFQTLTGAKFVITAEAGTPDLGAVLHEIYELYTDYVLKACTNPFYELEMPIRCELFTHHLEKLIERHTASGT 291
            A +V  +PV S GIE LETDTF+LQ FQT TG KF +TA  GTPDL AVL  +YELY DYVLK   NPFYELEMPIRC LF   L+  +++  A  +
Sbjct:   44 AIAVLASPVASGGIETLETDTFRLQCFQTPTGLKFFLTAALGTPDLDAVLRTVYELYVDYVLK---NPFYELEMPIRCSLFNSGLKTFVDKFNADSS 137
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BLAST of mRNA_H-elongata_contig7124.14784.1 vs. uniprot
Match: A0A2D4CAE8_PYTIN (Trafficking protein particle complex subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CAE8_PYTIN)

HSP 1 Score: 112 bits (280), Expect = 1.190e-29
Identity = 59/94 (62.77%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 AHSVQVAPVPSSGIEKLETDTFKLQSFQTLTGAKFVITAEAGTPDLGAVLHEIYELYTDYVLKACTNPFYELEMPIRCELFTHHLEKLIERHTA 282
            A +V  APV S GIE LETDTF+LQ FQT TG KF ITA  GTPDL   L  IYELY DYVLK   NPFYELEMPIRC LF   L+  +++  A
Sbjct:   44 AIAVLAAPVASGGIESLETDTFRLQCFQTPTGIKFFITAALGTPDLDHALRTIYELYVDYVLK---NPFYELEMPIRCSLFNAGLKSFVDKFNA 134
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BLAST of mRNA_H-elongata_contig7124.14784.1 vs. uniprot
Match: F0WDB3_9STRA (Trafficking protein particle complex subunit n=3 Tax=Albugo TaxID=65356 RepID=F0WDB3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.990e-27
Identity = 54/85 (63.53%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:   19 APVPSSGIEKLETDTFKLQSFQTLTGAKFVITAEAGTPDLGAVLHEIYELYTDYVLKACTNPFYELEMPIRCELFTHHLEKLIER 273
            APV S GI  LETDTF+LQ FQTLTG KF ITA+ GT D+   L  IYELY DYVLK   NPFYELEMPIRC LF   L+  +++
Sbjct:   50 APVASGGINSLETDTFRLQCFQTLTGIKFFITAQLGTLDIDNALKTIYELYVDYVLK---NPFYELEMPIRCTLFNAGLKLFVDK 131
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BLAST of mRNA_H-elongata_contig7124.14784.1 vs. uniprot
Match: A0A1S3DR24_DIACI (Trafficking protein particle complex subunit n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A1S3DR24_DIACI)

HSP 1 Score: 105 bits (262), Expect = 9.280e-27
Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:   13 QVAPVP-SSGIEKLETDTFKLQSFQTLTGAKFVITAEAGTPDLGAVLHEIYELYTDYVLKACTNPFYELEMPIRCELFTHHLEKLIERHTASG 288
            Q++P P SSGIE LE DTFKL  +QTLTG KF+I  +     L  +L +IYELY DY LK   NPFY LEMPIRCELF  HL+ L+++H  +G
Sbjct:   68 QLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALK---NPFYSLEMPIRCELFDTHLQNLLQQHEKTG 157
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BLAST of mRNA_H-elongata_contig7124.14784.1 vs. uniprot
Match: A0A1E3QCW2_LIPST (Trafficking protein particle complex subunit n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3QCW2_LIPST)

HSP 1 Score: 103 bits (257), Expect = 2.600e-26
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   13 QVAPVPSS-GIEKLETDTFKLQSFQTLTGAKFVITAEAGTPDLGAVLHEIYELYTDYVLKACTNPFYELEMPIRCELFTHHLEKLI 267
            Q++PVPSS GIE LET+TF+LQ FQTLTG KF++ +E    +  AVL  IYELY DYV+K   NPFY++EMP+RCELF  HL   I
Sbjct:   49 QISPVPSSSGIEVLETETFRLQCFQTLTGTKFLLISEPRQQNTDAVLRRIYELYADYVIK---NPFYQIEMPVRCELFDRHLATYI 131
[Close]
BLAST of mRNA_H-elongata_contig7124.14784.1 vs. uniprot
Match: A0A1S3DFX5_DIACI (Trafficking protein particle complex subunit n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A1S3DFX5_DIACI)

HSP 1 Score: 105 bits (262), Expect = 3.830e-26
Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:   13 QVAPVP-SSGIEKLETDTFKLQSFQTLTGAKFVITAEAGTPDLGAVLHEIYELYTDYVLKACTNPFYELEMPIRCELFTHHLEKLIERHTASG 288
            Q++P P SSGIE LE DTFKL  +QTLTG KF+I  +     L  +L +IYELY DY LK   NPFY LEMPIRCELF  HL+ L+++H  +G
Sbjct:  124 QLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALK---NPFYSLEMPIRCELFDTHLQNLLQQHEKTG 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7124.14784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ99_ECTSI8.340e-4884.38Trafficking protein particle complex subunit n=2 T... [more]
A0A835ZDL6_9STRA1.380e-3871.58Trafficking protein particle complex subunit n=1 T... [more]
K8Z5G7_NANGC6.510e-3467.02Trafficking protein particle complex subunit (Frag... [more]
A0A7S2RJT7_9STRA1.700e-3264.29Trafficking protein particle complex subunit n=1 T... [more]
K3WRL1_GLOUD2.940e-3059.79Trafficking protein particle complex subunit n=1 T... [more]
A0A2D4CAE8_PYTIN1.190e-2962.77Trafficking protein particle complex subunit n=2 T... [more]
F0WDB3_9STRA5.990e-2763.53Trafficking protein particle complex subunit n=3 T... [more]
A0A1S3DR24_DIACI9.280e-2756.99Trafficking protein particle complex subunit n=1 T... [more]
A0A1E3QCW2_LIPST2.600e-2660.47Trafficking protein particle complex subunit n=1 T... [more]
A0A1S3DFX5_DIACI3.830e-2656.99Trafficking protein particle complex subunit n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7124contigH-elongata_contig7124:9344..9947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue1.1e-36
Seed eggNOG ortholog2880.D7FQ99
Preferred nameTRAPPC4
KEGG koko:K20303
GOsGO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005793,GO:0005794,GO:0005795,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007275,GO:0007399,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016358,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022008,GO:0022607,GO:0030008,GO:0030030,GO:0030133,GO:0030154,GO:0030182,GO:0030425,GO:0031175,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032800,GO:0032991,GO:0033036,GO:0034613,GO:0036477,GO:0042886,GO:0042995,GO:0043005,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045184,GO:0045202,GO:0045212,GO:0045213,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048468,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051020,GO:0051179,GO:0051234,GO:0051276,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0070382,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0090114,GO:0097447,GO:0097458,GO:0097708,GO:0098772,GO:0098791,GO:0098793,GO:0099023,GO:0099503,GO:0120025,GO:0120036,GO:0120038,GO:1901576,GO:1990070,GO:1990071,GO:1990072
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5122@1,KOG3369@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSybindin-like protein
Ec32 orthologEc-01_006940.1
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931112.1248891-CDS-H-elongata_contig7124:9343..94541622931112.1248891-CDS-H-elongata_contig7124:9343..9454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7124 9344..9454 -
1691679703.10733-CDS-H-elongata_contig7124:9343..94541691679703.10733-CDS-H-elongata_contig7124:9343..9454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7124 9344..9454 -
1622931112.1482348-CDS-H-elongata_contig7124:9749..99471622931112.1482348-CDS-H-elongata_contig7124:9749..9947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7124 9750..9947 -
1691679703.1223414-CDS-H-elongata_contig7124:9749..99471691679703.1223414-CDS-H-elongata_contig7124:9749..9947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7124 9750..9947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7124.14784.1prot_H-elongata_contig7124.14784.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7124 9344..9947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7124.14784.1

>prot_H-elongata_contig7124.14784.1 ID=prot_H-elongata_contig7124.14784.1|Name=mRNA_H-elongata_contig7124.14784.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
AHSVQVAPVPSSGIEKLETDTFKLQSFQTLTGAKFVITAEAGTPDLGAVL
HEIYELYTDYVLKACTNPFYELEMPIRCELFTHHLEKLIERHTASGTPGA
KG*
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mRNA from alignment at H-elongata_contig7124:9344..9947-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7124.14784.1 ID=mRNA_H-elongata_contig7124.14784.1|Name=mRNA_H-elongata_contig7124.14784.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=604bp|location=Sequence derived from alignment at H-elongata_contig7124:9344..9947- (Himanthalia elongata Himel1 dioecious)
GCCCACTCTGTGCAGGTTGCGCCCGTACCCTCGTCCGGCATCGAAAAGCT
CGAAACAGACACTTTCAAGTTGCAGAGCTTCCAGACGTTAACGGGAGCCA
AGTTCGTCATCACTGCAGAGGCCGGAACCCCCGATCTAGGCGCGGTACTC
CATGAAATCTACGAGCTCTACACGGATTACGTGCTCAAGGCATGTACCGT
TTGATATTGTAGTAGTATGTTTTATATTGTATCCAGGCAGGAACCCATAA
GAAACATCGATACTTGCCGAAACTCTTAAGCACACCACGATGATGGCAAT
CACTTCGTTAGAATCCAGTTGATCCTTACTCTGCTATATGTGAATACCAA
ACACTTCGCTCTGGAGCTCTTCAATTGTGTTTGATATTTTCCACTCCATC
CCCCCCCCCCTCCCCCCAACTTTCGTGGCCTTCCTATATTTTGATGTCCT
ATCTTGAATGAACCGGGGTGATTACTCTGACCGGACAACGCAGAACCCGT
TCTACGAGTTGGAGATGCCGATTCGATGCGAGCTCTTCACACACCACCTC
GAGAAGCTGATCGAGCGGCATACTGCGTCAGGGACACCAGGGGCAAAGGG
TTAG
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Coding sequence (CDS) from alignment at H-elongata_contig7124:9344..9947-

>mRNA_H-elongata_contig7124.14784.1 ID=mRNA_H-elongata_contig7124.14784.1|Name=mRNA_H-elongata_contig7124.14784.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig7124:9344..9947- (Himanthalia elongata Himel1 dioecious)
GCCCACTCTGTGCAGGTTGCGCCCGTACCCTCGTCCGGCATCGAAAAGCT
CGAAACAGACACTTTCAAGTTGCAGAGCTTCCAGACGTTAACGGGAGCCA
AGTTCGTCATCACTGCAGAGGCCGGAACCCCCGATCTAGGCGCGGTACTC
CATGAAATCTACGAGCTCTACACGGATTACGTGCTCAAGGCATGTACCGC
CCACTCTGTGCAGGTTGCGCCCGTACCCTCGTCCGGCATCGAAAAGCTCG
AAACAGACACTTTCAAGTTGCAGAGCTTCCAGACGTTAACGGGAGCCAAG
TTCGTCATCACTGCAGAGGCCGGAACCCCCGATCTAGGCGCGGTACTCCA
TGAAATCTACGAGCTCTACACGGATTACGTGCTCAAGGCATGTACCAACC
CGTTCTACGAGTTGGAGATGCCGATTCGATGCGAGCTCTTCACACACCAC
CTCGAGAAGCTGATCGAGCGGCATACTGCGTCAGGGACACCAGGGGCAAA
GGGTTAGAACCCGTTCTACGAGTTGGAGATGCCGATTCGATGCGAGCTCT
TCACACACCACCTCGAGAAGCTGATCGAGCGGCATACTGCGTCAGGGACA
CCAGGGGCAAAGGGTTAG
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