mRNA_H-elongata_contig71109.14775.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71109.14775.1
Unique NamemRNA_H-elongata_contig71109.14775.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71109.14775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71109contigH-elongata_contig71109:2520..3040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size185
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.1370234-CDS-H-elongata_contig71109:2519..26181622931111.1370234-CDS-H-elongata_contig71109:2519..2618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71109 2520..2618 +
1691679702.6257105-CDS-H-elongata_contig71109:2519..26181691679702.6257105-CDS-H-elongata_contig71109:2519..2618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71109 2520..2618 +
1622931111.158089-CDS-H-elongata_contig71109:2956..30401622931111.158089-CDS-H-elongata_contig71109:2956..3040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71109 2957..3040 +
1691679702.6384597-CDS-H-elongata_contig71109:2956..30401691679702.6384597-CDS-H-elongata_contig71109:2956..3040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71109 2957..3040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71109.14775.1prot_H-elongata_contig71109.14775.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71109 2520..3040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71109.14775.1

>prot_H-elongata_contig71109.14775.1 ID=prot_H-elongata_contig71109.14775.1|Name=mRNA_H-elongata_contig71109.14775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MREEIAVGSAKRVPVWARELVSRGGDGSRGQVGAPQDSAGDRSFFYGLGR
DREGGHLKRFR
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mRNA from alignment at H-elongata_contig71109:2520..3040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71109.14775.1 ID=mRNA_H-elongata_contig71109.14775.1|Name=mRNA_H-elongata_contig71109.14775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=521bp|location=Sequence derived from alignment at H-elongata_contig71109:2520..3040+ (Himanthalia elongata Himel1 dioecious)
ATGCGGGAAGAAATCGCCGTGGGATCCGCCAAGCGAGTTCCCGTCTGGGC
ACGAGAACTCGTCAGTCGCGGAGGGGACGGAAGCCGTGGCCAGGTCGGGG
TAAGAGAAGAATCGGCGGGCTCCCGCGGAACCGGTTACCGAGTACACTCA
AGCGCTTGTTCATGGTTTTATCGGGTGTTTTCACTGTGCACAGCGATGGA
TATGATTGCTTTCCCCCCTCCTTACCTTCAGTTATGGCGATTCAAGTGCA
CCACGCGATGGATCGGTCTAGCATCCCTACACGCCTCCTCTCAAGTGAAA
CCTCTTATATCTGCAAAACTAAGTTCGACGTAGGCCATCATGACCAGTCC
CATCGGCTACAGGTGTGAAAACAAACAAATGTGACACTATAGAACCGACA
TCCTGCGTATCCGACGCTGGACGTTTTCGACCGCCAGGCCCCTCAAGATT
CGGCAGGAGACCGATCCTTTTTCTATGGACTTGGACGTGACAGAGAAGGA
GGACACCTTAAAAGATTTAGA
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Coding sequence (CDS) from alignment at H-elongata_contig71109:2520..3040+

>mRNA_H-elongata_contig71109.14775.1 ID=mRNA_H-elongata_contig71109.14775.1|Name=mRNA_H-elongata_contig71109.14775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig71109:2520..3040+ (Himanthalia elongata Himel1 dioecious)
ATGCGGGAAGAAATCGCCGTGGGATCCGCCAAGCGAGTTCCCGTCTGGGC
ACGAGAACTCGTCAGTCGCGGAGGGGACGGAAGCCGTGGCCAGGTCGGGA
TGCGGGAAGAAATCGCCGTGGGATCCGCCAAGCGAGTTCCCGTCTGGGCA
CGAGAACTCGTCAGTCGCGGAGGGGACGGAAGCCGTGGCCAGGTCGGGGC
CCCTCAAGATTCGGCAGGAGACCGATCCTTTTTCTATGGACTTGGACGTG
ACAGAGAAGGAGGACACCTTAAAAGATTTAGAGCCCCTCAAGATTCGGCA
GGAGACCGATCCTTTTTCTATGGACTTGGACGTGACAGAGAAGGAGGACA
CCTTAAAAGATTTAGA
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