mRNA_H-elongata_contig70959.14757.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70959.14757.1
Unique NamemRNA_H-elongata_contig70959.14757.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70959.14757.1 vs. uniprot
Match: D7FKK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK5_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.420e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1
Query:    1 VMVAVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALRQ 159
            VMVAVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALRQ
Sbjct:  319 VMVAVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALRQ 371          
BLAST of mRNA_H-elongata_contig70959.14757.1 vs. uniprot
Match: A0A7S1UGU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGU7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.440e-18
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 VMVAVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAAL 153
            V+ +VQ +VY YEGSINKFLMDDKGSTL+A +GLPPV H DDP R VLAAL
Sbjct:   75 VLESVQRAVYRYEGSINKFLMDDKGSTLIACFGLPPVSHEDDPLRAVLAAL 125          
BLAST of mRNA_H-elongata_contig70959.14757.1 vs. uniprot
Match: X6MV46_RETFI (Guanylate cyclase domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MV46_RETFI)

HSP 1 Score: 79.0 bits (193), Expect = 3.430e-16
Identity = 33/51 (64.71%), Postives = 47/51 (92.16%), Query Frame = 1
Query:   13 VQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALRQEK 165
            +Q+ +Y+Y+GS+NKFL+DDKGST++AV+GLPPV H++DP+RGVLAAL  +K
Sbjct:  126 LQDVIYKYQGSLNKFLVDDKGSTVMAVFGLPPVAHSNDPSRGVLAALELQK 176          
BLAST of mRNA_H-elongata_contig70959.14757.1 vs. uniprot
Match: A0A5A8CC48_CAFRO (Phosphodiesterase n=7 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CC48_CAFRO)

HSP 1 Score: 80.9 bits (198), Expect = 4.220e-16
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 VMVAVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAAL 153
            V+  VQ +VY YEGS+NKFLMDDKGSTL+AV+GLPP+ H DD TR VLAAL
Sbjct:  308 VLRTVQSAVYRYEGSVNKFLMDDKGSTLIAVFGLPPISHHDDSTRAVLAAL 358          
BLAST of mRNA_H-elongata_contig70959.14757.1 vs. uniprot
Match: A0A7S2R6Q5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6Q5_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.730e-16
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1
Query:    1 VMVAVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALR 156
            V+  VQ++VY+YEGSINKFLMDDKGSTL+A +GL P GH DD  RGVLAALR
Sbjct:  254 VLEGVQKAVYQYEGSINKFLMDDKGSTLIACFGLTPNGHEDDAVRGVLAALR 305          
BLAST of mRNA_H-elongata_contig70959.14757.1 vs. uniprot
Match: A0A7S0H2E7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H2E7_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 1.070e-15
Identity = 33/52 (63.46%), Postives = 47/52 (90.38%), Query Frame = 1
Query:    1 VMVAVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALR 156
            +M  VQ++VY+YEGS+NKFLMDDKGSTL+AV+GLPP+ H +DP RG+L++++
Sbjct:  330 IMQTVQKAVYKYEGSLNKFLMDDKGSTLIAVFGLPPLAHENDPVRGLLSSIQ 381          
BLAST of mRNA_H-elongata_contig70959.14757.1 vs. uniprot
Match: F0XWN7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWN7_AURAN)

HSP 1 Score: 79.3 bits (194), Expect = 1.460e-15
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1
Query:   10 AVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAALR 156
            A Q++VYEYEGS+NKFL DDKGSTL+A +GLPP  H DDP R VLAALR
Sbjct:  869 AAQKAVYEYEGSVNKFLHDDKGSTLIACWGLPPTTHVDDPVRAVLAALR 917          
BLAST of mRNA_H-elongata_contig70959.14757.1 vs. uniprot
Match: A0A7S2C3L5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C3L5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.440e-15
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 VMVAVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAAL 153
            V+V VQ++VY+YEGS+NKFLMDDKGSTL+A +GL PV H DD  R  LA++
Sbjct:   49 VLVGVQKAVYKYEGSVNKFLMDDKGSTLLACFGLSPVSHIDDALRACLASI 99          
BLAST of mRNA_H-elongata_contig70959.14757.1 vs. uniprot
Match: X6NR00_RETFI (Guanylate cyclase domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NR00_RETFI)

HSP 1 Score: 76.6 bits (187), Expect = 8.300e-15
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   10 AVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAA--LRQEKVSVFISDYLQLWIRY 210
            A+QE VY Y+GS+NKFL+DDKGST++A++GLPPV H +DP R VL A  L+ E   +F + Y +  ++Y
Sbjct:  249 ALQEKVYLYQGSLNKFLVDDKGSTVMAIFGLPPVAHVNDPERAVLTAMELQTELSQLFTAHYKEDMLKY 317          
BLAST of mRNA_H-elongata_contig70959.14757.1 vs. uniprot
Match: A0A7R9YAC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAC5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.820e-15
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 VMVAVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAAL 153
            V+ + Q +VY YEGSINKFLMDDKGSTL+A +GLPPV H DD  R VLAA+
Sbjct:  142 VLTSAQRAVYRYEGSINKFLMDDKGSTLIACFGLPPVSHEDDSLRAVLAAI 192          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70959.14757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKK5_ECTSI1.420e-25100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UGU7_9STRA4.440e-1874.51Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
X6MV46_RETFI3.430e-1664.71Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A5A8CC48_CAFRO4.220e-1672.55Phosphodiesterase n=7 Tax=Cafeteria roenbergensis ... [more]
A0A7S2R6Q5_9STRA5.730e-1673.08Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0H2E7_9EUKA1.070e-1563.46Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
F0XWN7_AURAN1.460e-1573.47Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2C3L5_9STRA5.440e-1564.71Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
X6NR00_RETFI8.300e-1552.17Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A7R9YAC5_9STRA8.820e-1568.63Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70959contigH-elongata_contig70959:2687..2911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue3.7e-21
Seed eggNOG ortholog2880.D7FKK5
KEGG rclassRC00295
KEGG koko:K11265
KEGG ReactionR00089,R00434
KEGG Pathwayko00230,ko04024,ko04371,ko04713,ko04714,map00230,map04024,map04371,map04713,map04714
EggNOG free text desc.Adenylate cyclase
EggNOG OGs2QPPT@2759,COG2114@1
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-12_001750.2
EC4.6.1.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.6376777-CDS-H-elongata_contig70959:2686..29081622931108.6376777-CDS-H-elongata_contig70959:2686..2908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70959 2687..2908 -
1691679701.6332877-CDS-H-elongata_contig70959:2686..29081691679701.6332877-CDS-H-elongata_contig70959:2686..2908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70959 2687..2908 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.6534078-UTR-H-elongata_contig70959:2908..29111622931108.6534078-UTR-H-elongata_contig70959:2908..2911Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70959 2909..2911 -
1691679701.6455975-UTR-H-elongata_contig70959:2908..29111691679701.6455975-UTR-H-elongata_contig70959:2908..2911Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70959 2909..2911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70959.14757.1prot_H-elongata_contig70959.14757.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70959 2687..2908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70959.14757.1

>prot_H-elongata_contig70959.14757.1 ID=prot_H-elongata_contig70959.14757.1|Name=mRNA_H-elongata_contig70959.14757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MVAVQESVYEYEGSINKFLMDDKGSTLVAVYGLPPVGHADDPTRGVLAAL
RQEKVSVFISDYLQLWIRYTMYM*
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mRNA from alignment at H-elongata_contig70959:2687..2911-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70959.14757.1 ID=mRNA_H-elongata_contig70959.14757.1|Name=mRNA_H-elongata_contig70959.14757.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig70959:2687..2911- (Himanthalia elongata Himel1 dioecious)
GTTATGGTTGCAGTCCAAGAGTCCGTGTACGAGTACGAGGGCAGCATCAA CAAGTTTCTTATGGACGATAAGGGATCCACCCTCGTCGCCGTTTATGGGC TGCCTCCCGTGGGGCACGCAGACGACCCGACGAGGGGCGTGTTGGCCGCC CTCAGGCAAGAGAAAGTTTCCGTCTTTATTAGTGACTATTTACAACTGTG GATAAGGTATACCATGTATATGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig70959:2687..2911-

>mRNA_H-elongata_contig70959.14757.1 ID=mRNA_H-elongata_contig70959.14757.1|Name=mRNA_H-elongata_contig70959.14757.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig70959:2687..2911- (Himanthalia elongata Himel1 dioecious)
ATGGTTGCAGTCCAAGAGTCCGTGTACGAGTACGAGGGCAGCATCAACAA
GTTTCTTATGGACGATAAGGGATCCACCCTCGTCGCCGTTTATGGGCTGC
CTCCCGTGGGGCACGCAGACGACCCGACGAGGGGCGTGTTGGCCGCCCTC
AGGCAAGAGAAAGTTTCCGTCTTTATTAGTGACTATTTACAACTGTGGAT
AAGGTATACCATGTATATGTAAATGGTTGCAGTCCAAGAGTCCGTGTACG
AGTACGAGGGCAGCATCAACAAGTTTCTTATGGACGATAAGGGATCCACC
CTCGTCGCCGTTTATGGGCTGCCTCCCGTGGGGCACGCAGACGACCCGAC
GAGGGGCGTGTTGGCCGCCCTCAGGCAAGAGAAAGTTTCCGTCTTTATTA
GTGACTATTTACAACTGTGGATAAGGTATACCATGTATATGTAA
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