mRNA_H-elongata_contig70945.14752.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70945.14752.1
Unique NamemRNA_H-elongata_contig70945.14752.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70945.14752.1 vs. uniprot
Match: A0A1A7XNE6_9TELE (DNA helicase (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7XNE6_9TELE)

HSP 1 Score: 130 bits (326), Expect = 2.380e-31
Identity = 86/218 (39.45%), Postives = 119/218 (54.59%), Query Frame = 1
Query:    1 FNKSVAEEAQRHFPRNVECRTINSVAWKHVGGFRYKTDA-------SWNFTCTTKYVRYVDAKDVSDTMNRYWNSRDEDMTEKHI----------KTLIDPLS-EWVLQGARLAWARMKVLPKNLPSSQRLQMSHSGLLKLFQLAQKRCPTLKSEYDVIMLDEAQDSNDCIANVVTRQAANGCGVILVGDPHQMIYGFRGARDQITNTRGTKTLNLTQ 600
            FN SVA EA+R FP NV+C+T +S+A+  VG +RYK          S NF        Y+ AK V+ T++ +  S D  ++ +H+          +T+IDP + E   Q A+  W +MK +  N  S +   M+H G +KL+QL++ +   L   YDVI LDEAQD    I +V+  Q    CG ILVGDPHQ IY FRGA + +T    T    LTQ
Sbjct:  494 FNNSVASEARRRFPSNVDCKTAHSLAYYDVG-WRYKPKMTANLKPFSINFALPAGRGGYIKAKVVATTLSAFMASTDPTISTRHVPMDHITHRGQRTIIDPENQELFAQDAKAIWDKMKDI--NEKSKRAYYMTHDGYMKLWQLSKPK-RRLSDRYDVIFLDEAQDCTPAIMDVLLSQR---CGKILVGDPHQQIYTFRGAINALTTASHTHIFYLTQ 704          
BLAST of mRNA_H-elongata_contig70945.14752.1 vs. uniprot
Match: A0A1A8UCG5_NOTFU (DNA helicase (Fragment) n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A8UCG5_NOTFU)

HSP 1 Score: 126 bits (317), Expect = 1.500e-30
Identity = 82/218 (37.61%), Postives = 121/218 (55.50%), Query Frame = 1
Query:    1 FNKSVAEEAQRHFPRNVECRTINSVAWKHVGGFRYKTDA-------SWNFTCTTKYVRYVDAKDVSDTMNRYWNSRDEDMTEKHI----------KTLIDPLSEWVL-QGARLAWARMKVLPKNLPSSQRLQMSHSGLLKLFQLAQKRCPTLKSEYDVIMLDEAQDSNDCIANVVTRQAANGCGVILVGDPHQMIYGFRGARDQITNTRGTKTLNLTQ 600
            FN SVA EA+R FP NV+C+T++S+A++ VG +RYK          S NF        +V AK ++ T++ +  S D  ++ +H+          +T+ID  ++ +  Q A+  W +M  +  N  S +   M+H G +KL+QL++ +   L  +YDVI LDEAQD    I +V+  Q    CG ILVGDPHQ IY FRGA + +T    T    LTQ
Sbjct:  134 FNSSVASEARRRFPSNVDCKTVHSLAYRDVG-WRYKPKMTPNLYPFSINFALPAGRGGFVRAKVIATTLSAFMASADPTISTRHVPFDYVTHKGRRTVIDSENQQLFAQDAQTIWGKMTDI--NEKSKRAYYMTHDGYMKLWQLSKPK-RRLSDQYDVIFLDEAQDCTPAIMDVLLSQR---CGKILVGDPHQQIYTFRGAVNALTTASHTHIFYLTQ 344          
BLAST of mRNA_H-elongata_contig70945.14752.1 vs. uniprot
Match: UPI001FAD100B (F-box DNA helicase 1 isoform X1 n=3 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAD100B)

HSP 1 Score: 127 bits (319), Expect = 2.070e-30
Identity = 84/220 (38.18%), Postives = 117/220 (53.18%), Query Frame = 1
Query:    1 FNKSVAEEAQRHFPRNVECRTINSVAWKHVGGFRYKTDA---------SWNFTCTTKYVRYVDAKDVSDTMNRYWNSRDEDMTEKHI----------KTLIDPLSE-WVLQGARLAWARMKVLPKNLPSSQRLQMSHSGLLKLFQLAQKRCPTLKSEYDVIMLDEAQDSNDCIANVVTRQAANGCGVILVGDPHQMIYGFRGARDQITNTRGTKTLNLTQ 600
            FN SVA EA+R FP NV+CRT +S+A+  VG  RYK            S NF   T    +  AK V+  +N +  S D+ +  +H+          + +I+P  + + +Q A+  W +MK + +   S Q   M H G LKL+QL   + P L  +YD I +DEAQD    I +V+  Q   GCG ILVGDPHQ IY F+GA + + + R T    LTQ
Sbjct:  498 FNNSVACEARRRFPANVDCRTAHSLAYNDVGR-RYKVHKKLTFNVKPFSINFALPTGAAGFCRAKVVTTILNTFMASADQTIDSQHVPYDYVINKGCRKVIEPEEQKFFIQEAKAIWNKMKDVKEK--SKQAYYMPHDGYLKLWQLRNPK-PRLSDQYDAIFIDEAQDCTPAIMDVLLSQ---GCGKILVGDPHQQIYTFKGAVNALHSVRHTHIFYLTQ 710          
BLAST of mRNA_H-elongata_contig70945.14752.1 vs. uniprot
Match: A0A1A8URJ7_NOTFU (DNA helicase n=4 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8URJ7_NOTFU)

HSP 1 Score: 126 bits (317), Expect = 3.220e-30
Identity = 82/218 (37.61%), Postives = 121/218 (55.50%), Query Frame = 1
Query:    1 FNKSVAEEAQRHFPRNVECRTINSVAWKHVGGFRYKTDA-------SWNFTCTTKYVRYVDAKDVSDTMNRYWNSRDEDMTEKHI----------KTLIDPLSEWVL-QGARLAWARMKVLPKNLPSSQRLQMSHSGLLKLFQLAQKRCPTLKSEYDVIMLDEAQDSNDCIANVVTRQAANGCGVILVGDPHQMIYGFRGARDQITNTRGTKTLNLTQ 600
            FN SVA EA+R FP NV+C+T++S+A++ VG +RYK          S NF        +V AK ++ T++ +  S D  ++ +H+          +T+ID  ++ +  Q A+  W +M  +  N  S +   M+H G +KL+QL++ +   L  +YDVI LDEAQD    I +V+  Q    CG ILVGDPHQ IY FRGA + +T    T    LTQ
Sbjct:  134 FNSSVASEARRRFPSNVDCKTVHSLAYRDVG-WRYKPKMTPNLYPFSINFALPAGRGGFVRAKVIATTLSAFMASADPTISTRHVPFDYVTHKGRRTVIDSENQQLFAQDAQTIWGKMTDI--NEKSKRAYYMTHDGYMKLWQLSKPK-RRLSDQYDVIFLDEAQDCTPAIMDVLLSQR---CGKILVGDPHQQIYTFRGAVNALTTASHTHIFYLTQ 344          
BLAST of mRNA_H-elongata_contig70945.14752.1 vs. uniprot
Match: A0A1A8HT58_NOTKU (DNA helicase n=10 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8HT58_NOTKU)

HSP 1 Score: 126 bits (317), Expect = 3.830e-30
Identity = 82/218 (37.61%), Postives = 121/218 (55.50%), Query Frame = 1
Query:    1 FNKSVAEEAQRHFPRNVECRTINSVAWKHVGGFRYKTDA-------SWNFTCTTKYVRYVDAKDVSDTMNRYWNSRDEDMTEKHI----------KTLIDPLSEWVL-QGARLAWARMKVLPKNLPSSQRLQMSHSGLLKLFQLAQKRCPTLKSEYDVIMLDEAQDSNDCIANVVTRQAANGCGVILVGDPHQMIYGFRGARDQITNTRGTKTLNLTQ 600
            FN SVA EA+R FP NV+C+T++S+A++ VG +RYK          S NF        +V AK ++ T++ +  S D  ++ +H+          +T+ID  ++ +  Q A+  W +M  +  N  S +   M+H+G +KL+QL+  +   L  +YDVI LDEAQD    I +V+  Q    CG ILVGDPHQ IY FRGA + +T    T    LTQ
Sbjct:  492 FNSSVASEARRRFPSNVDCKTVHSLAYRDVG-WRYKPKMTPNLYPFSINFALPAGRGGFVRAKVIATTLSAFMASADPTISTRHVPFDYVTHKGRRTVIDSENQQLFAQDAQTIWGKMTDI--NEKSKRAYYMTHNGYMKLWQLSNPK-RRLSDQYDVIFLDEAQDCTPAIMDVLLSQR---CGKILVGDPHQQIYTFRGAVNALTTASHTHIFYLTQ 702          
BLAST of mRNA_H-elongata_contig70945.14752.1 vs. uniprot
Match: A0A3B4UQ30_SERDU (DNA helicase n=4 Tax=Seriola TaxID=8160 RepID=A0A3B4UQ30_SERDU)

HSP 1 Score: 125 bits (314), Expect = 9.610e-30
Identity = 82/219 (37.44%), Postives = 116/219 (52.97%), Query Frame = 1
Query:    1 FNKSVAEEAQRHFPRNVECRTINSVAWKHVGG-FRYKTDASWNFTCTTKYVRYVD-------AKDVSDTMNRYWNSRDEDMTEKHI-----------KTLIDPLSEWVLQGARLAWARMKVLPKNLPSSQRLQMSHSGLLKLFQLAQKRCPTLKSEYDVIMLDEAQDSNDCIANVVTRQAANGCGVILVGDPHQMIYGFRGARDQITNTRGTKTLNLTQ 600
            FNKSVA EA R FPRNV+C+T++S+A+K VG  + Y+   + N    T      D       AK V+ T+N +  S D+ +T +H+           K + D      +  A++ W +MK L  N  + +   M+H G LKL+QL   + P L  +YDV+ +DEAQD    I +V+  Q    CG ILVGDPHQ IY F+GA + +     T    LTQ
Sbjct:  447 FNKSVAFEAARRFPRNVDCKTVHSLAFKDVGKRYHYRKKLTANLKAFTINAVLPDGRGGFTKAKVVTTTLNTFMASADQTITTRHVPSTHVTNNGFRKDIDDGEKRLFVHDAQMIWNKMKDL--NETNKEAYSMTHDGYLKLWQLQNPK-PRLSDKYDVLFIDEAQDCTPAIMDVLLSQR---CGKILVGDPHQQIYTFKGAVNALQIVDHTHIFYLTQ 659          
BLAST of mRNA_H-elongata_contig70945.14752.1 vs. uniprot
Match: A0A6I9P370_9TELE (DNA helicase n=4 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9P370_9TELE)

HSP 1 Score: 125 bits (314), Expect = 9.660e-30
Identity = 87/218 (39.91%), Postives = 116/218 (53.21%), Query Frame = 1
Query:    1 FNKSVAEEAQRHFPRNVECRTINSVAWKHVGGFRYKTDASWN---FTCTTKYVR----YVDAKDVSDTMNRYWNSRDEDMTEKHI-----------KTLIDPLSEWVLQGARLAWARMKVLPKNLPSSQRLQMSHSGLLKLFQLAQKRCPTLKSEYDVIMLDEAQDSNDCIANVVTRQAANGCGVILVGDPHQMIYGFRGARDQITNTRGTKTLNLTQ 600
            FNKSVA EAQR FP NV C+T++S+A+  VG  RY+    +N   FT ++        +  AK V+ T+N +  S DE +   H+           K + D   E  +Q AR  W +MK L K    S  L M+H G LKL+QL +   P L  +YDV+ +DEAQD    I +V+  Q    CG ILVGDPHQ IY F+GA + +     T    LTQ
Sbjct:  491 FNKSVATEAQRRFPSNVACKTVHSLAFTDVGR-RYRQKLIFNMKPFTISSVLPPGRGGFAKAKVVTTTLNAFKASTDECINISHVPMSRMGKNGRRKIITDYERELFVQDARKIWIKMKDLTKT--KSDDLPMTHDGYLKLWQLQR---PCLSDQYDVLFIDEAQDCTPAIMDVLLSQR---CGKILVGDPHQQIYTFKGAVNALHIVDHTHIFYLTQ 699          
BLAST of mRNA_H-elongata_contig70945.14752.1 vs. uniprot
Match: A0A4W6F9Z3_LATCA (DNA helicase n=2 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6F9Z3_LATCA)

HSP 1 Score: 125 bits (314), Expect = 9.690e-30
Identity = 86/219 (39.27%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    1 FNKSVAEEAQRHFPRNVECRTINSVAWKHVG-GFRYKTDASWN---FTCTTKYVR----YVDAKDVSDTMNRYWNSRDEDMTEKHI------KT---LIDPLSEWVL--QGARLAWARMKVLPKNLPSSQRLQMSHSGLLKLFQLAQKRCPTLKSEYDVIMLDEAQDSNDCIANVVTRQAANGCGVILVGDPHQMIYGFRGARDQITNTRGTKTLNLTQ 600
            FNKSVA EAQR FPRNV+C+T++S+A++ +G  + ++   +WN   FT ++        +V AK V  T+N +  S DE +T +H+      KT   +   ++E  L  Q A++ W +MK L  N    +   M+H G LKL+QL + R P L  +YDVI +DE+QD    I +V+  Q    C  ILVGDPHQ IY F+GA + +     T    LTQ
Sbjct:  510 FNKSVACEAQRRFPRNVDCKTVHSLAYRDIGLKYHFRRKLTWNLKPFTISSVLPEGRGGFVKAKVVITTLNAFMASTDEHITIEHVPFAHVTKTGNRMGINIAERPLFVQDAQMIWNKMKDL--NETKIEAYHMTHDGYLKLWQLQEPR-PCLSDKYDVIFIDESQDCTPAIMDVLLSQR---CAKILVGDPHQQIYTFKGAVNALNVVDHTHIYYLTQ 722          
BLAST of mRNA_H-elongata_contig70945.14752.1 vs. uniprot
Match: A0A8C7EHL3_NOTPE (DNA helicase n=2 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C7EHL3_NOTPE)

HSP 1 Score: 125 bits (313), Expect = 1.310e-29
Identity = 82/223 (36.77%), Postives = 123/223 (55.16%), Query Frame = 1
Query:    1 FNKSVAEEAQRHFPRNVECRTINSVAWKHVGGFRYKTDASWNFTCTTKYV------------RYVDAKDVSDTMNRYWNSRDEDMTEKHIKT----------LIDPLSEWV-LQGARLAWARMKVLPKNLPSSQRLQMSHSGLLKLFQLAQKRCPTLKSEYDVIMLDEAQDSNDCIANVVTRQAANGCGVILVGDPHQMIYGFRGARDQITNTRGTKTLNLTQ 600
            FNK+VAE  +R FPRNV C+T +S+A++ VG  RYK     NF+  + +             +Y+  K V +T+  ++ S DE+++E+H+ T          L+ P  + + +Q A+  W  MK L  +  + +  ++++ G LKL+QL++   P L   YD I +DEAQD    I +VV  Q+   CGVILVGDPHQ IY FRGA + +     T    LTQ
Sbjct:  476 FNKAVAERGKRVFPRNVTCKTFHSLAYESVGK-RYKEKGKLNFSSLSAFSVSFLIQHREGQSQYIRGKTVKETLENFFASSDEEISEEHVPTWFKNTHGIRKLVSPEEKRINVQEAKEIWYHMKKLDGD--AEKNYKITYDGYLKLWQLSK---PQLTG-YDAIFVDEAQDCTPAIVDVVLSQS---CGVILVGDPHQQIYTFRGAVNTLYTVPHTHVYYLTQ 688          
BLAST of mRNA_H-elongata_contig70945.14752.1 vs. uniprot
Match: A0A3Q1HGC9_ANATE (DNA helicase n=2 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HGC9_ANATE)

HSP 1 Score: 124 bits (310), Expect = 3.320e-29
Identity = 83/218 (38.07%), Postives = 117/218 (53.67%), Query Frame = 1
Query:    1 FNKSVAEEAQRHFPRNVECRTINSVAWKHVGGFRYKTDASWN---FTCTTKYVR----YVDAKDVSDTMNRYWNSRDEDMTEKHIKTL----------IDPLSEWV-LQGARLAWARMKVLPKNLPSSQRLQMSHSGLLKLFQLAQKRCPTLKSEYDVIMLDEAQDSNDCIANVVTRQAANGCGVILVGDPHQMIYGFRGARDQITNTRGTKTLNLTQ 600
            FNKSVA EAQR FPRNV+C+T++S+A+  VG +RY+   ++N   FT  +        +  AK V+ T+N +  S D  +T +H+ +           ID   + + +  A+  W +MK L  N        ++H G LKL+QL Q   P L  +Y V+ +DEAQD    I NV+  Q    CG ILVGDPHQ IY F+GA + +     T    LTQ
Sbjct:  483 FNKSVANEAQRRFPRNVDCKTVHSLAYSSVG-WRYRKKLTFNLKPFTINSVLPEGRGGFTKAKVVTTTLNTFMASADPTITTRHVPSTHVSNSGNRQHIDECEKLLFVHDAQKIWNKMKDL--NETDEDAYHLTHDGYLKLWQLQQ---PCLSDQYHVLFIDEAQDCTPAIMNVMLSQR---CGKILVGDPHQQIYTFKGAVNALQIVDHTHIYYLTQ 691          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70945.14752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1A7XNE6_9TELE2.380e-3139.45DNA helicase (Fragment) n=1 Tax=Iconisemion striat... [more]
A0A1A8UCG5_NOTFU1.500e-3037.61DNA helicase (Fragment) n=1 Tax=Nothobranchius fur... [more]
UPI001FAD100B2.070e-3038.18F-box DNA helicase 1 isoform X1 n=3 Tax=Girardinic... [more]
A0A1A8URJ7_NOTFU3.220e-3037.61DNA helicase n=4 Tax=Nothobranchius TaxID=28779 Re... [more]
A0A1A8HT58_NOTKU3.830e-3037.61DNA helicase n=10 Tax=Nothobranchius TaxID=28779 R... [more]
A0A3B4UQ30_SERDU9.610e-3037.44DNA helicase n=4 Tax=Seriola TaxID=8160 RepID=A0A3... [more]
A0A6I9P370_9TELE9.660e-3039.91DNA helicase n=4 Tax=Notothenioidei TaxID=8205 Rep... [more]
A0A4W6F9Z3_LATCA9.690e-3039.27DNA helicase n=2 Tax=Lates calcarifer TaxID=8187 R... [more]
A0A8C7EHL3_NOTPE1.310e-2936.77DNA helicase n=2 Tax=Nothoprocta perdicaria TaxID=... [more]
A0A3Q1HGC9_ANATE3.320e-2938.07DNA helicase n=2 Tax=Anabas testudineus TaxID=6414... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70945contigH-elongata_contig70945:248..1212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score120.9
Seed ortholog evalue6.6e-25
Seed eggNOG ortholog69293.ENSGACP00000025348
Preferred nameFBXO18
KEGG koko:K10300
GOsGO:0000018,GO:0000151,GO:0000724,GO:0000725,GO:0000737,GO:0000785,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003824,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006282,GO:0006302,GO:0006308,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008094,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009607,GO:0009719,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010556,GO:0010558,GO:0010562,GO:0010569,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0015616,GO:0016043,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0023051,GO:0023056,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031461,GO:0032268,GO:0032270,GO:0032392,GO:0032446,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034655,GO:0035561,GO:0035562,GO:0036211,GO:0042325,GO:0042327,GO:0042623,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043138,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0045005,GO:0045738,GO:0045910,GO:0045934,GO:0045937,GO:0046483,GO:0046700,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070647,GO:0071103,GO:0071216,GO:0071495,GO:0071704,GO:0071840,GO:0072396,GO:0072402,GO:0072423,GO:0072429,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0140097,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1902229,GO:1902231,GO:1902494,GO:1902531,GO:1902533,GO:1990234,GO:2000042,GO:2000104,GO:2000112,GO:2000113,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.F-box protein, helicase, 18
EggNOG OGs396PD@33154,3BHJH@33208,3CTGZ@33213,487SK@7711,495MK@7742,49QYX@7898,COG0210@1,KOG2108@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size600
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.1478944-CDS-H-elongata_contig70945:247..7091622931108.1478944-CDS-H-elongata_contig70945:247..709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70945 248..709 -
1691679701.4514632-CDS-H-elongata_contig70945:247..7091691679701.4514632-CDS-H-elongata_contig70945:247..709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70945 248..709 -
1622931108.1876245-CDS-H-elongata_contig70945:1074..12121622931108.1876245-CDS-H-elongata_contig70945:1074..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70945 1075..1212 -
1691679701.4643457-CDS-H-elongata_contig70945:1074..12121691679701.4643457-CDS-H-elongata_contig70945:1074..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70945 1075..1212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70945.14752.1prot_H-elongata_contig70945.14752.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70945 248..1212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70945.14752.1

>prot_H-elongata_contig70945.14752.1 ID=prot_H-elongata_contig70945.14752.1|Name=mRNA_H-elongata_contig70945.14752.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
FNKSVAEEAQRHFPRNVECRTINSVAWKHVGGFRYKTDASWNFTCTTKYV
RYVDAKDVSDTMNRYWNSRDEDMTEKHIKTLIDPLSEWVLQGARLAWARM
KVLPKNLPSSQRLQMSHSGLLKLFQLAQKRCPTLKSEYDVIMLDEAQDSN
DCIANVVTRQAANGCGVILVGDPHQMIYGFRGARDQITNTRGTKTLNLTQ
back to top

mRNA from alignment at H-elongata_contig70945:248..1212-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70945.14752.1 ID=mRNA_H-elongata_contig70945.14752.1|Name=mRNA_H-elongata_contig70945.14752.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=965bp|location=Sequence derived from alignment at H-elongata_contig70945:248..1212- (Himanthalia elongata Himel1 dioecious)
TTCAACAAGTCGGTGGCCGAGGAGGCACAGAGGCATTTCCCCCGCAACGT TGAGTGCCGGACAATAAACTCGGTGGCATGGAAGCACGTCGGTGGTTTCC GCTACAAGACGGACGCGAGCTGGAACTTCACTTGCACAGTGCCGCAGCTC CGGAACTTTCTCAAGAGCAACCACCCGACGCCGACGCCCGTGAGACATCG ATCGCCAGGCTCATTATTTTCTTTCTTTCTTGAGTTCTGTAGGAAATCGA GCGAACGAGGCTAACCTTGCGTGCGTTGCCGTGAAGCGTAAACTCGGGGG CGACGTCGAGTCTCTACTCGATGGAGTATCACCCCACTGACCCCCCTACT CCTCCCCCCACTGTGTTTGTTCATTGTGCATTTGGCTGGAAGGCCACACA GTCTATATGATGTATACTGTGCATGTGATGGTCCGGTAGTGTTTGGGGGC GAACGTGTTTCTCTTGAAAACGCGATTTTGTTGTGTCCGCTTTTCCTTTC CAGACTAAGTACGTTCGCTACGTGGACGCTAAGGACGTCTCGGACACCAT GAACAGGTACTGGAACTCGAGGGACGAGGATATGACAGAAAAACATATCA AGACCTTGATCGACCCTTTGAGTGAGTGGGTGCTGCAAGGTGCGCGGCTC GCGTGGGCCAGAATGAAGGTGCTGCCGAAGAACCTTCCTAGCTCCCAGAG GCTGCAGATGTCTCACTCGGGCTTGCTGAAGCTGTTCCAGCTGGCCCAAA AGCGGTGCCCGACCCTGAAGAGCGAATATGACGTCATCATGCTCGACGAG GCCCAAGACAGCAACGACTGTATAGCCAACGTTGTGACGAGGCAGGCGGC CAACGGCTGCGGGGTGATCCTTGTGGGAGACCCGCACCAGATGATCTACG GTTTTCGTGGCGCGCGCGACCAAATCACGAACACGCGGGGAACCAAGACT CTCAATCTCACGCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig70945:248..1212-

>mRNA_H-elongata_contig70945.14752.1 ID=mRNA_H-elongata_contig70945.14752.1|Name=mRNA_H-elongata_contig70945.14752.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig70945:248..1212- (Himanthalia elongata Himel1 dioecious)
TTCAACAAGTCGGTGGCCGAGGAGGCACAGAGGCATTTCCCCCGCAACGT
TGAGTGCCGGACAATAAACTCGGTGGCATGGAAGCACGTCGGTGGTTTCC
GCTACAAGACGGACGCGAGCTGGAACTTCACTTGCACATTCAACAAGTCG
GTGGCCGAGGAGGCACAGAGGCATTTCCCCCGCAACGTTGAGTGCCGGAC
AATAAACTCGGTGGCATGGAAGCACGTCGGTGGTTTCCGCTACAAGACGG
ACGCGAGCTGGAACTTCACTTGCACAACTAAGTACGTTCGCTACGTGGAC
GCTAAGGACGTCTCGGACACCATGAACAGGTACTGGAACTCGAGGGACGA
GGATATGACAGAAAAACATATCAAGACCTTGATCGACCCTTTGAGTGAGT
GGGTGCTGCAAGGTGCGCGGCTCGCGTGGGCCAGAATGAAGGTGCTGCCG
AAGAACCTTCCTAGCTCCCAGAGGCTGCAGATGTCTCACTCGGGCTTGCT
GAAGCTGTTCCAGCTGGCCCAAAAGCGGTGCCCGACCCTGAAGAGCGAAT
ATGACGTCATCATGCTCGACGAGGCCCAAGACAGCAACGACTGTATAGCC
AACGTTGTGACGAGGCAGGCGGCCAACGGCTGCGGGGTGATCCTTGTGGG
AGACCCGCACCAGATGATCTACGGTTTTCGTGGCGCGCGCGACCAAATCA
CGAACACGCGGGGAACCAAGACTCTCAATCTCACGCAGACTAAGTACGTT
CGCTACGTGGACGCTAAGGACGTCTCGGACACCATGAACAGGTACTGGAA
CTCGAGGGACGAGGATATGACAGAAAAACATATCAAGACCTTGATCGACC
CTTTGAGTGAGTGGGTGCTGCAAGGTGCGCGGCTCGCGTGGGCCAGAATG
AAGGTGCTGCCGAAGAACCTTCCTAGCTCCCAGAGGCTGCAGATGTCTCA
CTCGGGCTTGCTGAAGCTGTTCCAGCTGGCCCAAAAGCGGTGCCCGACCC
TGAAGAGCGAATATGACGTCATCATGCTCGACGAGGCCCAAGACAGCAAC
GACTGTATAGCCAACGTTGTGACGAGGCAGGCGGCCAACGGCTGCGGGGT
GATCCTTGTGGGAGACCCGCACCAGATGATCTACGGTTTTCGTGGCGCGC
GCGACCAAATCACGAACACGCGGGGAACCAAGACTCTCAATCTCACGCAG
back to top