mRNA_H-elongata_contig70911.14748.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70911.14748.1
Unique NamemRNA_H-elongata_contig70911.14748.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70911.14748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70911contigH-elongata_contig70911:1719..2157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size323
Cds size171
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70911.14748.1prot_H-elongata_contig70911.14748.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70911 1719..2006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931107.6656713-CDS-H-elongata_contig70911:1718..17951622931107.6656713-CDS-H-elongata_contig70911:1718..1795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70911 1719..1795 +
1691679701.2692497-CDS-H-elongata_contig70911:1718..17951691679701.2692497-CDS-H-elongata_contig70911:1718..1795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70911 1719..1795 +
1622931107.6869488-CDS-H-elongata_contig70911:1912..20061622931107.6869488-CDS-H-elongata_contig70911:1912..2006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70911 1913..2006 +
1691679701.277388-CDS-H-elongata_contig70911:1912..20061691679701.277388-CDS-H-elongata_contig70911:1912..2006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70911 1913..2006 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931107.7051303-UTR-H-elongata_contig70911:2006..21571622931107.7051303-UTR-H-elongata_contig70911:2006..2157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70911 2007..2157 +
1691679701.285304-UTR-H-elongata_contig70911:2006..21571691679701.285304-UTR-H-elongata_contig70911:2006..2157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70911 2007..2157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70911.14748.1

>prot_H-elongata_contig70911.14748.1 ID=prot_H-elongata_contig70911.14748.1|Name=mRNA_H-elongata_contig70911.14748.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
IRARPSPLVERKTVKNQCCCCCWGGGLDYNSGPSITLGNERNRSIDQSSP
LIVFGR*
back to top

mRNA from alignment at H-elongata_contig70911:1719..2157+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70911.14748.1 ID=mRNA_H-elongata_contig70911.14748.1|Name=mRNA_H-elongata_contig70911.14748.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=439bp|location=Sequence derived from alignment at H-elongata_contig70911:1719..2157+ (Himanthalia elongata Himel1 dioecious)
ATTCGGGCCCGCCCATCACCCTTGGTTGAAAGGAAAACCGTCAAAAACCA
GTGTTGTTGTTGTTGTTGGGGGGGGGGGTAGATTAAAATTCGGGCCCTCC
CACCCCCCTTGGTAGCGAACGGACCCGACCGCGTGATCAAGCAGCCNNNN
NNNNNNGTGTAAGACGAGGGTGGTTGGGTTTGTGGGGGGGTGAGGTTAGA
TTATAATTCGGGCCCGTCCATCACCCTTGGTAACGAACGGAATCGATCGA
TCGATCAATCGAGCCCTCTCATTGTTTTTGGGCGCTGACGGGTGTCTGTG
AAGAGCGAAGTCCCCCCCCACCTCCCGGCCCCATCTCCTACGACTCGAAA
AAACATATATACCAGAGGGGGGGGGGCTGCCTTATCTAGTTATCTCACAC
GTACCGGTCCGCCGGACTGCTTCCCCCGACAGTCTTCCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig70911:1719..2157+

>mRNA_H-elongata_contig70911.14748.1 ID=mRNA_H-elongata_contig70911.14748.1|Name=mRNA_H-elongata_contig70911.14748.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig70911:1719..2157+ (Himanthalia elongata Himel1 dioecious)
ATTCGGGCCCGCCCATCACCCTTGGTTGAAAGGAAAACCGTCAAAAACCA
GTGTTGTTGTTGTTGTTGGGGGGGGGGATTCGGGCCCGCCCATCACCCTT
GGTTGAAAGGAAAACCGTCAAAAACCAGTGTTGTTGTTGTTGTTGGGGGG
GGGGGTTAGATTATAATTCGGGCCCGTCCATCACCCTTGGTAACGAACGG
AATCGATCGATCGATCAATCGAGCCCTCTCATTGTTTTTGGGCGCTGAGT
TAGATTATAATTCGGGCCCGTCCATCACCCTTGGTAACGAACGGAATCGA
TCGATCGATCAATCGAGCCCTCTCATTGTTTTTGGGCGCTGA
back to top