mRNA_H-elongata_contig7069.14735.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7069.14735.1
Unique NamemRNA_H-elongata_contig7069.14735.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7069.14735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7069contigH-elongata_contig7069:5626..7269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size621
Cds size441
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7069.14735.1prot_H-elongata_contig7069.14735.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7069 5626..6066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931106.2174213-CDS-H-elongata_contig7069:5625..60661622931106.2174213-CDS-H-elongata_contig7069:5625..6066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7069 5626..6066 -
1691679700.6125221-CDS-H-elongata_contig7069:5625..60661691679700.6125221-CDS-H-elongata_contig7069:5625..6066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7069 5626..6066 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931106.2343974-UTR-H-elongata_contig7069:6066..60781622931106.2343974-UTR-H-elongata_contig7069:6066..6078Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7069 6067..6078 -
1691679700.6217585-UTR-H-elongata_contig7069:6066..60781691679700.6217585-UTR-H-elongata_contig7069:6066..6078Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7069 6067..6078 -
1622931106.2533982-UTR-H-elongata_contig7069:6121..62431622931106.2533982-UTR-H-elongata_contig7069:6121..6243Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7069 6122..6243 -
1691679700.6317246-UTR-H-elongata_contig7069:6121..62431691679700.6317246-UTR-H-elongata_contig7069:6121..6243Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7069 6122..6243 -
1622931106.27024-UTR-H-elongata_contig7069:7223..72691622931106.27024-UTR-H-elongata_contig7069:7223..7269Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7069 7224..7269 -
1691679700.6421165-UTR-H-elongata_contig7069:7223..72691691679700.6421165-UTR-H-elongata_contig7069:7223..7269Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7069 7224..7269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7069.14735.1

>prot_H-elongata_contig7069.14735.1 ID=prot_H-elongata_contig7069.14735.1|Name=mRNA_H-elongata_contig7069.14735.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
MGGQGFASTSPVCSSDGAVNKKRSTGRAASKRRRRTRPLVEQRGVKAAEA
EREASSTIKGPPREGETDDADVDKRLEDPGLTGMGSVNCTEADASMSAPT
DTAVKIEQRGARTVRMRKFLPAKERHDRDRNNFSKKKSAGEVDVDEE
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mRNA from alignment at H-elongata_contig7069:5626..7269-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7069.14735.1 ID=mRNA_H-elongata_contig7069.14735.1|Name=mRNA_H-elongata_contig7069.14735.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1644bp|location=Sequence derived from alignment at H-elongata_contig7069:5626..7269- (Himanthalia elongata Himel1 dioecious)
GGGGATGACGAGCAGGGCGGGCGGGGCTATTAGGAGACCGACGGAGGTGC
GCGCGAAGCTCTAGTCGGTTCCGTCTGCGAGGGCGTCGGGGCTCGATTGC
GGTCTTTTTCGGAGATAAGACAGAGGCCTTAAAAACGCATTTTAATAGTT
TCTAGTTTGGTGTATACAGGTTTCGCGCCGCCGGTGGCCATCGTTGGGGG
TTAGGGTGTCTTAATGGTGGGCCTAAGGCCGCAGCCTTTCAAGCTTGAGT
GAGCTTTATCGCCTATCGTGGGGCCTCAGGCGGCGAGGCTCGACGACTCT
CGAAGCACGTCCATTTCTACTGTACCGATAACCCTTAGCGCTACGCACGG
GGCTGGTGATAGTCTCGGTATGGATTACGATGGCGACGGTCCTGGAAAGA
GTCGTAGAGCGGCTCTTGCTGTAATTGACGAAGTACAACTCGTCTTCGTT
TCCATCTTCAATTGCCAAAACGCGCAACAAGCAAGCAGGAATATATTCCT
TCCGGAGGGTAGACTAGAGCCTCTGGAGCGGGCAGTATCGGACGGTATTT
TCCGAACACTTGCCTTGCAGTATTCTCGAGATTTTTTGGGTGTGATTTTT
GTCACTTGCTTCTTCCTAGCTTAGCTGGCAGCTGGCGTGCATCCTCGTTT
GTGCTGCGGGCATTCGCACTTTCGACAATCTAACGAACAATCCGACGATG
ATGTTCTACTGGGACCAATCTGACGTAATGACAGAAAAGAGCAAGGAACC
AACATCTTATGCTTGGTATATGGTCTGCGGTATGTTGTATATGGTGTATC
GTATATGATTTACCGCAGGGACCGAAGGTGTCGAGTCGAGCGTCTATCCG
TAGAGCGTCCCATCAATTATGGCCATCGAGGGAGGAAGAGGGGATCCTCG
AACTACTGTAGTTTTAACTTATGTTCGTACTGATTCTGACCCGCCATCTC
CCCCCTAACAAATGATTTTAACGTATTTTACCCCCACGCGTACGTGGGGG
TCGCATCTCCGTTGCCTCTCGTCAAGTTCATGGATAGCTGTACGAGACTC
TGGGGGAGAGGCAACTTCTATGGCAATGGCAGAGATAGGGACAGGAGGCC
GTGTTTTCCCGGCGGTGGGCTGGAAAGGCGCGGATTCGTCTCCCATACCC
TCACGAGATACAAGAGGTGCGACAAAGCCAACAAAGCCAACATTCCGAGA
GAGATGGGCGGCCAGGGTTTCGCGTCGACCTCTCCCGTGTGCTCGTCTGA
CGGTGCGGTCAACAAGAAACGGTCGACCGGGAGGGCTGCCAGCAAGCGCA
GACGCCGAACCCGCCCCCTCGTTGAGCAGCGCGGAGTCAAGGCGGCCGAG
GCGGAAAGAGAGGCATCATCAACCATCAAGGGACCCCCTCGGGAGGGCGA
AACGGACGATGCCGACGTGGACAAGAGGTTAGAAGACCCTGGCCTCACAG
GGATGGGAAGCGTGAACTGCACCGAGGCCGACGCCTCCATGTCGGCGCCG
ACGGACACCGCCGTGAAGATCGAGCAGAGGGGCGCGAGGACCGTTCGTAT
GCGAAAGTTTTTACCGGCAAAAGAGCGCCACGATCGCGATCGCAATAATT
TTAGCAAAAAAAAATCGGCGGGCGAGGTTGATGTGGACGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig7069:5626..7269-

>mRNA_H-elongata_contig7069.14735.1 ID=mRNA_H-elongata_contig7069.14735.1|Name=mRNA_H-elongata_contig7069.14735.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig7069:5626..7269- (Himanthalia elongata Himel1 dioecious)
ATGGGCGGCCAGGGTTTCGCGTCGACCTCTCCCGTGTGCTCGTCTGACGG
TGCGGTCAACAAGAAACGGTCGACCGGGAGGGCTGCCAGCAAGCGCAGAC
GCCGAACCCGCCCCCTCGTTGAGCAGCGCGGAGTCAAGGCGGCCGAGGCG
GAAAGAGAGGCATCATCAACCATCAAGGGACCCCCTCGGGAGGGCGAAAC
GGACGATGCCGACGTGGACAAGAGGTTAGAAGACCCTGGCCTCACAGGGA
TGGGAAGCGTGAACTGCACCGAGGCCGACGCCTCCATGTCGGCGCCGACG
GACACCGCCGTGAAGATCGAGCAGAGGGGCGCGAGGACCGTTCGTATGCG
AAAGTTTTTACCGGCAAAAGAGCGCCACGATCGCGATCGCAATAATTTTA
GCAAAAAAAAATCGGCGGGCGAGGTTGATGTGGACGAGGAGATGGGCGGC
CAGGGTTTCGCGTCGACCTCTCCCGTGTGCTCGTCTGACGGTGCGGTCAA
CAAGAAACGGTCGACCGGGAGGGCTGCCAGCAAGCGCAGACGCCGAACCC
GCCCCCTCGTTGAGCAGCGCGGAGTCAAGGCGGCCGAGGCGGAAAGAGAG
GCATCATCAACCATCAAGGGACCCCCTCGGGAGGGCGAAACGGACGATGC
CGACGTGGACAAGAGGTTAGAAGACCCTGGCCTCACAGGGATGGGAAGCG
TGAACTGCACCGAGGCCGACGCCTCCATGTCGGCGCCGACGGACACCGCC
GTGAAGATCGAGCAGAGGGGCGCGAGGACCGTTCGTATGCGAAAGTTTTT
ACCGGCAAAAGAGCGCCACGATCGCGATCGCAATAATTTTAGCAAAAAAA
AATCGGCGGGCGAGGTTGATGTGGACGAGGAG
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