mRNA_H-elongata_contig7068.14733.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7068.14733.1
Unique NamemRNA_H-elongata_contig7068.14733.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7068.14733.1 vs. uniprot
Match: D7G0A4_ECTSI (Rab8A, RAB family GTPase n=2 Tax=Phaeophyceae TaxID=2870 RepID=D7G0A4_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 1.080e-120
Identity = 186/205 (90.73%), Postives = 194/205 (94.63%), Query Frame = 3 
Query:  141 MSRNDNPFDIQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEEREVSKEEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPGGAGGHGRTVDINGQASKKKSSCC 755
            MSRN++PFD+QIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDE+REVS+EEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGP         V++N QASKKK+ CC
Sbjct:    1 MSRNESPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNPGSRAAGNVNLNAQASKKKTGCC 205
[Close]
BLAST of mRNA_H-elongata_contig7068.14733.1 vs. uniprot
Match: A0A836CCB2_9STRA (Rab8A, rab family GTPase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCB2_9STRA)

HSP 1 Score: 335 bits (860), Expect = 5.510e-107
Identity = 172/206 (83.50%), Postives = 184/206 (89.32%), Query Frame = 3 
Query:  141 MSRNDNPFDIQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEEREVSKEEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPG-GAGGHGRTVDINGQASKKKSSCC 755
            M+R+++PFD+QIKLLMIGDSGVGKTCLLLRYA+D FSQTFITTIGIDFKIKNI+LD+KR+KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSF SIRNWVAQIQQHADV VNKILIGNKCD+D EREVS EEGAQLAAEYGIQFFETSAKNDINVEKGFIT+AREVK+RLMADG   GA   G           KKSSCC
Sbjct:    1 MARHESPFDMQIKLLMIGDSGVGKTCLLLRYASDHFSQTFITTIGIDFKIKNIELDTKRVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFQSIRNWVAQIQQHADVHVNKILIGNKCDIDNEREVSTEEGAQLAAEYGIQFFETSAKNDINVEKGFITVAREVKNRLMADGGSQGARTQGNVALSAPAKGGKKSSCC 206
[Close]
BLAST of mRNA_H-elongata_contig7068.14733.1 vs. uniprot
Match: A0A7S4M6F2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M6F2_9STRA)

HSP 1 Score: 314 bits (804), Expect = 1.090e-98
Identity = 157/206 (76.21%), Postives = 180/206 (87.38%), Query Frame = 3 
Query:  141 MSRNDNPFDIQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEEREVSKEEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPGG-AGGHGRTVDINGQASKKKSSCC 755
            MS+   P+D+QIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKN+D+D KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNWV+QIQQHADV VNKIL+GNKCDM +E+ VS EEGA+LA E+GI+F+E SAKNDINVE+ FI IAR+VKDRL+ADG GG A   G +++  GQ S++   CC
Sbjct:    1 MSQQSAPYDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVDIDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVSQIQQHADVHVNKILVGNKCDMLDEKVVSTEEGAKLAKEFGIEFWECSAKNDINVEQAFIGIARDVKDRLVADGGGGPAANKGLSLNKPGQGSQRNRGCC 206
[Close]
BLAST of mRNA_H-elongata_contig7068.14733.1 vs. uniprot
Match: A0A4D9D279_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D279_9STRA)

HSP 1 Score: 311 bits (796), Expect = 1.490e-97
Identity = 158/205 (77.07%), Postives = 173/205 (84.39%), Query Frame = 3 
Query:  141 MSRNDNPFDIQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEEREVSKEEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPGGAGGHGRTVDINGQASKKKSSCC 755
            M+R +NPFD+QIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKN++LD +RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNWV QIQQHADV VNKILIGNKCDM  +R VS EEG  LA ++GIQFFETSAKNDINVEK F+TIAREVK+R++ DG   A G    VD       KK  CC
Sbjct:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAKK--CC 203
[Close]
BLAST of mRNA_H-elongata_contig7068.14733.1 vs. uniprot
Match: K3WPX9_GLOUD (Uncharacterized protein n=28 Tax=Oomycota TaxID=4762 RepID=K3WPX9_GLOUD)

HSP 1 Score: 308 bits (790), Expect = 1.110e-96
Identity = 155/206 (75.24%), Postives = 178/206 (86.41%), Query Frame = 3 
Query:  141 MSRNDNPFDIQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEEREVSKEEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPGGAGGHGR-TVDINGQASKKKSSCC 755
            M+R++NPFD+QIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKNI+LD+K++KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SF SIRNWV QIQQHADV VNKILIGNKCDM +++ VS EEG  LA EYG++FFETSAKN+INVE GFI IAREVK+RLM +G    G H +  V+++ + +  K  CC
Sbjct:    1 MARHENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIELDNKKVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFQSIRNWVGQIQQHADVHVNKILIGNKCDMTDDKVVSTEEGQALADEYGVKFFETSAKNNINVESGFIEIAREVKNRLMEEG----GPHKKENVNLSAKPAAPKKGCC 202
[Close]
BLAST of mRNA_H-elongata_contig7068.14733.1 vs. uniprot
Match: A0A7S3M9C1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9C1_9STRA)

HSP 1 Score: 307 bits (786), Expect = 5.900e-96
Identity = 158/209 (75.60%), Postives = 173/209 (82.78%), Query Frame = 3 
Query:  135 TTMSRNDNPFDIQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEEREVSKEEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPGGA--GGHGRTVDINGQASKKKSSCC 755
            + M+  DN FD+QIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKNI LD KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SF SIRNWVAQIQ HADV VNKILIGNKCD  ++R +S EEG  LA EY I F+ETSAK D+NVEK FITIA +VK+RL+ADG  GA  GGH +     G A++KK  CC
Sbjct:    4 SNMAGRDNAFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNIQLDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRNSFISIRNWVAQIQMHADVNVNKILIGNKCDCQDQRAISYEEGEALAKEYNIHFYETSAKQDLNVEKSFITIATDVKNRLIADGGAGAVPGGH-KLAPGGGAAAQKKGGCC 211
[Close]
BLAST of mRNA_H-elongata_contig7068.14733.1 vs. uniprot
Match: W7TKL6_9STRA (Rab gtpase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKL6_9STRA)

HSP 1 Score: 309 bits (791), Expect = 1.890e-95
Identity = 156/201 (77.61%), Postives = 171/201 (85.07%), Query Frame = 3 
Query:  141 MSRNDNPFDIQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEEREVSKEEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPGGAGGHGRTVDINGQASKKK 743
            M+R +NPFD+QIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFKIKN++LD +RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNWV QIQQHADV VNKILIGNKCDM  +R VS EEG  LA ++GIQFFETSAKNDINVEK F+TIAREVK+R++ DG   A G    VD       KK
Sbjct:    1 MARQENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNLELDGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDGGPRATGGKAIVDAKRSNEAKK 201
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BLAST of mRNA_H-elongata_contig7068.14733.1 vs. uniprot
Match: A0A6T5Q365_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5Q365_HETAK)

HSP 1 Score: 305 bits (780), Expect = 3.810e-95
Identity = 157/207 (75.85%), Postives = 174/207 (84.06%), Query Frame = 3 
Query:  141 MSRNDNPFDIQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEEREVSKEEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPGGAGGHGRTVD--INGQASKKKSSCC 755
            M+R++N +D+QIKLLMIGDSGVGKTCLLLRYAN +FSQTFITTIGIDFKIKNI LD KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SFNSIRNWV+QIQQHADV VNKILIGNKCDM +ER V+ EEG +LAAEYGIQFFETSAKNDI VE+ F+T+AREVK+RL+ D         R  D  +N Q  K  S  C
Sbjct:    1 MARHENAYDMQIKLLMIGDSGVGKTCLLLRYANAAFSQTFITTIGIDFKIKNITLDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRNSFNSIRNWVSQIQQHADVHVNKILIGNKCDMKDERVVTTEEGQKLAAEYGIQFFETSAKNDIQVEESFVTVAREVKERLINDVD-------RKTDARVNLQTQKSSSKSC 200
[Close]
BLAST of mRNA_H-elongata_contig7068.14733.1 vs. uniprot
Match: A0A024TZG5_9STRA (Uncharacterized protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TZG5_9STRA)

HSP 1 Score: 304 bits (778), Expect = 8.940e-95
Identity = 150/180 (83.33%), Postives = 164/180 (91.11%), Query Frame = 3 
Query:  141 MSRNDNPFDIQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEEREVSKEEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADG 680
            M+RN+NPFD+QIKLLMIGDSGVGKTCLLLRYANDSFS TFITTIGIDFK+KNIDLD K+IKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SFNSIRNWV QIQQHADV VNKIL+GNKCDM +++ VS EEG  LA EYG++FFETSAKN+INVE GFI IA EVK RLM +G
Sbjct:    1 MARNENPFDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKVKNIDLDGKKIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFNSIRNWVGQIQQHADVHVNKILVGNKCDMLDDKVVSTEEGQALADEYGVKFFETSAKNNINVEGGFIEIANEVKTRLMEEG 180
[Close]
BLAST of mRNA_H-elongata_contig7068.14733.1 vs. uniprot
Match: A0A7S2V1J6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1J6_9STRA)

HSP 1 Score: 303 bits (776), Expect = 1.010e-94
Identity = 155/196 (79.08%), Postives = 167/196 (85.20%), Query Frame = 3 
Query:  168 IQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKIKNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEEREVSKEEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPGGAGGHGRTVDINGQASKKKSSCC 755
            +QIKLLMIGDSGVGKTCLLLRYAN SFSQTFITTIGIDFKIK IDLD KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+KSFNSIRNW++QIQQHADV VNKIL GNKCDM EER V+ EEG +LA+EYGI FFE SAKND+NVE  F+TIAREVKDRL+ D    A G G  V++      KKS CC
Sbjct:    1 MQIKLLMIGDSGVGKTCLLLRYANSSFSQTFITTIGIDFKIKTIDLDGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRKSFNSIRNWISQIQQHADVHVNKILCGNKCDMSEERAVTTEEGQKLASEYGIGFFEASAKNDVNVETSFVTIAREVKDRLLLDVGTMARG-GERVNLGNAKPAKKSGCC 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7068.14733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0A4_ECTSI1.080e-12090.73Rab8A, RAB family GTPase n=2 Tax=Phaeophyceae TaxI... [more]
A0A836CCB2_9STRA5.510e-10783.50Rab8A, rab family GTPase n=2 Tax=Tribonema minus T... [more]
A0A7S4M6F2_9STRA1.090e-9876.21Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A4D9D279_9STRA1.490e-9777.07Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K3WPX9_GLOUD1.110e-9675.24Uncharacterized protein n=28 Tax=Oomycota TaxID=47... [more]
A0A7S3M9C1_9STRA5.900e-9675.60Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7TKL6_9STRA1.890e-9577.61Rab gtpase n=1 Tax=Nannochloropsis gaditana TaxID=... [more]
A0A6T5Q365_HETAK3.810e-9575.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024TZG5_9STRA8.940e-9583.33Uncharacterized protein n=7 Tax=Saprolegniaceae Ta... [more]
A0A7S2V1J6_9STRA1.010e-9479.08Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7068contigH-elongata_contig7068:1692..9163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.9
Seed ortholog evalue9.9e-101
Seed eggNOG ortholog2880.D7G0A4
KEGG koko:K07901
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0078@1,KOG0078@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab8A, RAB family GTPase
Ec32 orthologEc-14_005110.1
Exons6
Model size2434
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7068.14733.1prot_H-elongata_contig7068.14733.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7068 2227..7487 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931106.0136652-UTR-H-elongata_contig7068:1691..17461622931106.0136652-UTR-H-elongata_contig7068:1691..1746Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7068 1692..1746 +
1691679700.5301058-UTR-H-elongata_contig7068:1691..17461691679700.5301058-UTR-H-elongata_contig7068:1691..1746Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7068 1692..1746 +
1622931106.0304823-UTR-H-elongata_contig7068:2141..22261622931106.0304823-UTR-H-elongata_contig7068:2141..2226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7068 2142..2226 +
1691679700.54178-UTR-H-elongata_contig7068:2141..22261691679700.54178-UTR-H-elongata_contig7068:2141..2226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7068 2142..2226 +
1622931106.1333346-UTR-H-elongata_contig7068:7487..91631622931106.1333346-UTR-H-elongata_contig7068:7487..9163Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7068 7488..9163 +
1691679700.6034205-UTR-H-elongata_contig7068:7487..91631691679700.6034205-UTR-H-elongata_contig7068:7487..9163Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7068 7488..9163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931106.0466945-CDS-H-elongata_contig7068:2226..22871622931106.0466945-CDS-H-elongata_contig7068:2226..2287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7068 2227..2287 +
1691679700.551108-CDS-H-elongata_contig7068:2226..22871691679700.551108-CDS-H-elongata_contig7068:2226..2287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7068 2227..2287 +
1622931106.0599124-CDS-H-elongata_contig7068:3653..37561622931106.0599124-CDS-H-elongata_contig7068:3653..3756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7068 3654..3756 +
1691679700.5613265-CDS-H-elongata_contig7068:3653..37561691679700.5613265-CDS-H-elongata_contig7068:3653..3756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7068 3654..3756 +
1622931106.0848656-CDS-H-elongata_contig7068:6372..65411622931106.0848656-CDS-H-elongata_contig7068:6372..6541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7068 6373..6541 +
1691679700.5715322-CDS-H-elongata_contig7068:6372..65411691679700.5715322-CDS-H-elongata_contig7068:6372..6541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7068 6373..6541 +
1622931106.1024346-CDS-H-elongata_contig7068:6988..70541622931106.1024346-CDS-H-elongata_contig7068:6988..7054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7068 6989..7054 +
1691679700.5816798-CDS-H-elongata_contig7068:6988..70541691679700.5816798-CDS-H-elongata_contig7068:6988..7054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7068 6989..7054 +
1622931106.1194017-CDS-H-elongata_contig7068:7268..74871622931106.1194017-CDS-H-elongata_contig7068:7268..7487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7068 7269..7487 +
1691679700.5910754-CDS-H-elongata_contig7068:7268..74871691679700.5910754-CDS-H-elongata_contig7068:7268..7487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7068 7269..7487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7068.14733.1

>prot_H-elongata_contig7068.14733.1 ID=prot_H-elongata_contig7068.14733.1|Name=mRNA_H-elongata_contig7068.14733.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MSRNDNPFDIQIKLLMIGDSGVGKTCLLLRYANDSFSQTFITTIGIDFKI
KNIDLDSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFN
SIRNWVAQIQQHADVAVNKILIGNKCDMDEEREVSKEEGAQLAAEYGIQF
FETSAKNDINVEKGFITIAREVKDRLMADGPGGAGGHGRTVDINGQASKK
KSSCC*
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mRNA from alignment at H-elongata_contig7068:1692..9163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7068.14733.1 ID=mRNA_H-elongata_contig7068.14733.1|Name=mRNA_H-elongata_contig7068.14733.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7472bp|location=Sequence derived from alignment at H-elongata_contig7068:1692..9163+ (Himanthalia elongata Himel1 dioecious)
CTCCTTGCAAGGAGCCACCCACACGAGGATCGCTTCTGCTGTGTCATACG
TCGTGGTGAGGGCTATCTGAGTTGCAGAATGAATGCTGAAGATGGCGAGG
TATCGATGGACGAGTTAAAAAGAGACCGATTTTTTGCGCCCCAGCCTCAT
TTCGCCCCGACCTCGTTTCGAACGCGGAATACAAATCGACACGCTCTCCC
CTCTCCAGTTTTGGCTGAGCGAAAAAAAAACATTCTTTTCGATCCTATCG
TGGAATTCATGGCAAGCACGGGGTGTTTCTTTCGAAAACCTTGACAGCCT
ACGCCATTTAGAAAAGTGTTTGGGAAATGAGGAGAGAGGGATACGCAGCG
GTCCCCCCTTGTTCATTTATCCCAGTCCCTCTCATATATTTTAATGTTTC
GAGTTGTCGCGGGCCGGGTACGTGACTCGGGGCAACGCTGATTGGCACAG
GGAAGAGCCGGAGCCAGCCACTACAAGGAGCGACTGACAGGTCCCTCCGC
CGGCGTTACTGCGACACCGTCTTGATTGTACCACCATGTCGCGAAATGAT
AACCCATTCGATATTCAGATCAAGCTGCTGATGATCGGCGACAGCGGTGA
GTGATATTGTGCACTTCCTCGGTGTTCGCCTTTTTCCTCTTTTAATGTTG
TTTTTGAAAAATTATATAACTGGTAGAAGGACACGTAACGAGTTGCATAA
TACTTGTATTAACAGAGAAGCACAAAACAATCACATAAAAGCAACGAGCT
ACAACTTGTAGGTACACGCCCACAGAGCCATGATGGTGCCACCCACCAAC
AGCCCGCAATTCTACATTTTCCCCTCTTTTGGCTCTACTCCCTAAGCTTG
ACGGCGTTGCACGAAACCACACCCTGCCCACGATCCTTGTAATAGTCGGT
TAGACAACTAATAGCGACATAGAGCTACACAACACACCAAGGAGTGTTAT
CTTTTCAGCCAACACCCGACGGTTAGAGTTGTTAGTTCATGCATCTAGGT
CGCTGACGCAGGCATGAATTGGTCGCTCTTGGCTCATGGCCTTTGGGAGC
TACGAGGGGAATCTTTTGAATCTTTCACCGCTACTATGATTATAGCTCCT
ACGACCTTTAGAAGTAAAGTTGTCGGTTGAGAAGAATTGAACCCCTTGAC
AAATGCGTCAAGCACACGTATCCACACTAAAAGTAGTATATTTCAAAAAG
ACGCCTTGACGCACTGTCAAGAGAAGCACGGGAGGAGTTGCACTCCGTAT
TTCATTTTGTCTTTCCTGTCTCCCGCAAGCGTCGTAAGCGGGGGTACCTG
GCGGTTGCTCTCCATTCTGTATATGTTTTTCATGTATTATGACCTTCGAT
AATTCACACATTTAGCAGGTACCATTTCTTAGTTCCACTCTTCATCGTAC
CAATATCAAATACCAGTTCTACTAAAGTTATCATGCCGGAAGAGGTCCCC
GCCCTGCCTTTCGCCTCAACTTTCAAAAACTCATGACGAGACTAATGAAG
TATTTTTCAAAGAAATTGCGCTTTTTCTTGGTTTAGCAACTCCCCTTTCT
ACCGGTACATATATCTACAGTTGGGGAACCCATTTACATAAGCTCGTCGC
GTACGCAGCTTGCCTTGTGTCGACCATTTCATATTTTTCCCTTCACAAAC
GTCGCCACCTCGAACCCCTTGCACACCTCATTGGTACATTTCGCGATTTT
TGTGTTCGTGTTTTTTTTGTGGAAAAAAACTCAAACCCTTTGAACACCCA
TACCTGTTTTCCTTTTTAAAACCTACTATTTTTTTCCCTTACTATTACAA
TCGGGGCTGTTGGGAATAGCCCCCCCCCGCAATAGGCGTGGATACTATAA
GGGTTTTAATGAGTTCATATGTTTTCAAATAAAAATGTGAGAACAGCAGC
AACAAACCTTCCCCCGTCCCGTCCCGTTGCCCTCTCGTTTCTTTTGCCAA
CGGATTTTTCAGGTGTGGGGAAGACCTGCCTGCTGCTTCGCTATGCCAAC
GACTCTTTTTCGCAGACGTTCATCACCACAATCGGCATCGACTTCAAGAT
AAAAAATATCGACCTGTGAGTGGCTCTTGAATCGCATCGCGCGTGAAGTC
ATTGACGACCTACACTAACAACACTAGAAGCCTTACAAACTAACGCGGGG
GAACACGCGCACGGCTCTCAGGAGCCCATAATGCCAGTGATTTTCAGTGA
CGTCTCGTGTTTTTTCTTTAAGGAGGTCGCTTGGGGCCCGTGGTTTTCGT
AGACGGCCGATTCAAGACAGGGGTTCGGGTTGTTTCGAGGGGTAATTCCT
CCTTTGCATCGTCGCGTGATATATCCAAAGAAGTCCAAGATCAAAAGAAG
CCCCTTAGGCCCTGTCTTAACGACCAGATTCTATTTTGGGTCTTTAATGA
CAATATTTAGAAATGCGGTGTAGTTAAAGTGATACGCCTCCGAGTCACTA
TAACCCCAATTGAAATACAACTAAAAAATATCTTCATAGCTTTCTATGTA
GACTGGCCAATGTATCCCACAGCTCATAGACTCATTTATTCCCCCTACCC
CCCTCCCGCACCTCTCCTCTTATACAGTTCACTCTCGAAGCTATAGCTAT
AGTTTTGGTTTGGCGTCCCCACATAAAAAATAACAATTGAAAGTTTACAG
GATAATAATGGAATCCCTGACATTATTCTGTTGACATGCTGAACTCATTA
TAGGGGAACACGATTTATCACGTGACGATTTGTGCTCAAAGGTAGTAATT
ACTAAACACGTTTGAACCTGATGATAGTTGGTCTCCTGGACTCCACCTCT
CATGGTGTTAATAATGTGTGGATGTTCGGATGGTTGGAATGAGTTCCAGG
TTAAAAAAAAAAAATACTCTAGTGCTCTCAGGCGAAGGGGCGCAGGGCCC
GGCTTTCGCGCAGTCGGACATAAATAACAAAAAACAAATGCAAATTACAG
GTGTCATGCCAGGCTTGTCCGGTTGATTGCACTGTCGCATCCAAGAAGAA
ATAAAACAGGAGGCAGATCCGTCTTGAAGTAAAAATGGCAGTACGGTAAG
GTAAACATGTACCGTACTACTGCACCGTGGCAGCCCTGCTAGCCAGGGAC
GCTCAACAAACTGTGACATACTAAGGTTATGTCGACATTTTTAGTCTTCC
TTTTTATTCTCACTTTATTCCTGTTTGCAGTAAAGTAGTTGGCTCCCAAA
CAGCAGCAGTCGAGCACGCTTTACCTCTGATAACACCCTTGCCATGCGCT
CTATAGTGAGTGCCATGTGCCATGCGGCATGCCAAATTTAGGGTTGTACA
AGAAAAACTAGGCAGCGTAAAGAGTTGTCTGCTATCGTTGGAAATAAGTT
CGAATCAAGATGCTTGCTGATGTTTGGTGAGACAATAAAGCTCCAACCTG
AGCAACAACGAACAACAGTAGGAGCCTACGATTTTTCCACGCCCTCTACT
TCACACGACCCGTTACATTTGCCTTATCCCCGCCTCTGTCCGAAAACATG
TTGTGATCGATTGGGCAGAGCAAGGTGTGCACCAGGTAGTTTTTTTTGTT
TTCGCATCTATTGCTGTTGTTCACTGATGTTTTGGGTGTCCAGCCGACAG
ATTTAATTCGCCAACAGATCCTATTAAATGCTAAAACAATTATTAATAAT
AGCATTTTTTGTCCATTTGGACAGATCCTGTTGTGCTAAATCTTGCTGAC
TAGTAGTAGTGTTATGCTCTTTCGACCAATAAGATAATTTTATTTTCGAC
AGATTATATCGACAGTTTTCACCTTCTGGTCAAGACAGGTCATAAGCGAA
TTTTGTATGATTTGGAGAGCTTCGCGCTCAACATCGGAAATCACACCCTT
TGCTATCAAACTCATTTTCCAAAGGTTTTATGATTCGATAAAGCCACACT
ACCACAGCTACCCGCAGAGCGTTAAACGTATCCAACATAGCTGCAGGAAA
GGCTGGATTTTTTATTATGCGTCATTAGGCTTTTGGCGACTGGAGATGGT
GGGTAATATACCGACCATGACGAAACAGAAGCGACAAACATATAGCGTGA
CTTCACCACACTGGTTTCTCGGGCGCCGCACCCTTTCCTTCATATCAGCA
CCCTTTCCTTCATATCAGCATTCTTTCCTTCATATCAGCATTCTTTCCTT
CATATCAGCACCCTTTCCTTCATATCAGCATTCTTTCCTTCATATCAGCA
CCCTTTCCTTCATATCAGCATTCTTTCCTTCATATCAGCATTCTTGTGTG
TCTTATTGTCTATTAAAGCAGTTCCCATTCGAATGTCTGGGCGTGTTTTT
CTCTCCACGACCCACATTGCGTTTTTGAAACTTTTTCTACTTTCCAATTT
TGGAATGGGCAAACCGCGAAAAAAGTATGAATCAGCCTGGTCCAATCTTT
AGAGGGATCGGGCTTTTTATTTTAAGAACTGTTGAACTCATTTCAACCCT
GGAACATCCACACCTTCTTAGCGCCGTGAGGGGTGCAATCCAGGGGACCA
TTTATCGTCAGGTTCGAATGTGTACATTACTACCTTTCAAGCAAAAAAAT
CGTCACACGTGATTAATCGTGTTCCCCAATTCGTTAAGTTTGGACAAGTT
TTGAAAATCGTTATAGCGTCTAGACCGACCCTAACACTGTACATTGAACT
GCTGTCCGGTGGCCCTCCCTCGGTACGTTAGTGATTCCAAGCGAATCAAG
CTACAGATCTGGGACACCGCTGGGCAAGAGCGCTTTCGCACCATCACGAC
CTCTTATTTCCGAGGCGCACAGGGAATCCTTCTCGTTTACGATGTAACGG
ACAAGAAGTCCTTTAACTCCATTCGGAACTGGGTGGCACAAATCCAGCAG
GTAAGCCGGGTAGCAGCGATCGGCATCGGAGAGTGCCAGGCAATGGATGC
AGTTCGCCGCCCCGTATATCGCTTTTTCCTTCAAGCCTTCTGAGGCGCGC
TGGAATATGAACCCTCCAGTTTTTTAGACAGCTTTGTCACATGTCCTTTT
TATGGGCTAGCGTAGAGCGTTACGAAGGACGGAAGAGTTCGACATTGAAA
CCCGTGTAACTTTTGGACGTAAATTAAGCCGCAAGCTTTTCGCGCGACGA
GTATCGAGCAGGCGGCAGGGAATCAAGTGACCGGGACAGCGTTCGTGCAT
TACCAACACGTCAATATATATATATATATATGTATATATATGCTGCAGAT
GTTTAGCCTCTGAAAGTCACATGTACTGCCCGTCGCTTGCCCGCGTCCGG
CGACTCGCTTCCCCTCTTGCTACCGTTCTCGGTGAAATTGCATCCAGCAC
GCGGATGTGGCAGTAAACAAGATTTTGATCGGCAACAAATGCGACATGGA
CGAGGAACGGGAGGTGACGCGATAGACCGTGGTAGTCGTTGACTTTGTGA
TGATGTGTTTCCGGATCCATCGAGGCTCGAGGCTAGATAATATTTTGATA
CACTACGACAACATTCGTCCGTTGCTGTCATTATAGCCTGTGTGTTGACG
ATGATATCATCTTGTGTTGTCTCATCTTGTTTCGTTCCGGTTGATTTCGC
TACCTCTCTTCACCTCCCGCCCTTCAGGTGAGCAAAGAGGAGGGTGCGCA
GCTGGCAGCCGAGTACGGCATCCAGTTCTTCGAAACAAGCGCCAAGAATG
ACATTAATGTCGAGAAGGGGTTTATCACCATCGCGCGGGAGGTGAAGGAC
AGGCTCATGGCGGACGGCCCCGGCGGGGCAGGTGGCCACGGCAGGACGGT
GGACATCAACGGCCAAGCCTCGAAGAAGAAGAGCAGCTGCTGCTAAGAAG
TTTTGAGGTTGATTGCGGTGGCGTTCTCGGTCTGGGAGCTTTTTCGTTGG
TTGCTCTTGCTCTCTCGATGGCACGCCGGGATGAGATCGTCTTCGATAAT
TTTTAGGGCGGCGTGTAAGAGAGATAGCGAGGGCGGGGATGTGTTGGACG
GGGGGAACCGGGGAGAAAGGAAGAGATGAGGAATCAGTGAGGTTGGTGTA
TGTCGTATGAGGTGTTGGAGATCCGTCGATGTGGCGTGGGTTGCGCCACG
ATATTCTCTCGGGTAGGGTGAGATCAGAGACACATAGCGAAGGCATATGG
TGTAATGTAATAAAATGGCGGTCGAAGGAGATCGACCGCCATCCTCCGAG
GCACGGGCAGAGTCCTTTGTCGTGTAACGAACCCGTCGGTCGCTCCCCAT
GTGCGCGGGATTTACCCATCCGCTAACGCCTCTCATTTAGTGCCTGGAAC
GGCTGCGAACATGCCTCCTGTACTTGGCATGTTCAGCTGCTGTGATACCG
AGCCTGAGGAGTGTCCACCAGGTCTAGAAGGCAGTAAATTTGAGTTGTCG
GGCGAAGGTGACTCGAGAGACGGTTTGAGGGGGCTTCCAGAGCTAAGGGA
CCACTATGCAAGTAGGGTGGTGCGATGACACCCTCTGACTCGGGTCGTGG
ATGAAGCTCTCTGTTGCAGGCTATTTGACTCCGCACACTGGTTATTGTAT
ACCGTTTCCAATGTTGTAAAGATCCTGGTTGGAGGGGCCGAGGACAATTG
AGCCCATGTCTGCGTTCATGTTTTGATGGCGTCTACTAGCGCTTGCATTT
TTGGTATGTCGTGCGTTTGTAGGGAAATGTGGTGCTCGTGATGGGCTGCA
GACACAGCGTATTCGATCGATAAGCAACAATACGTTTACTTTTATTTCCT
TTTCCGCGGAAGTTGGCGACGCGACAAAGACTGCCGCCTCGATGTTGGTG
GTTCTCCTATACCAAGGTTTAGTTATTTCTGAGTACGTGCGAGCTTCATA
ACGATCAAACCCGCTGACGAACGCCCGCTTTAGACGGGTACAGTATACCA
AAAGGGACCACAAACAGTCCACTTGAATGCCGGCAAGAAGTGAGGTGTCA
AGAGTTTTGGCCCCCGGCGCTCGACGACGTGACCTCTCCCCCCCACCAGC
GAGGCGCCGTTCTATTTAGCGATCATTCCGGTCGGGTATTGAACCGGCTA
AAATACGGACGAGTTAGTTGACAATTCGCGTGAACCTCTCTCGTTTTCGT
TGATAGCCTATATAGCTCTACAACACCAAATAATTGGGTGCTCGATAGCC
GGTACAGTTTTACTACTGCAGGGACAAAGAAGAAATTTATGCAGCACAAG
GGAGCTCTGAACAAATAATCTCGAAAAAATATGTAATTGTTTGGAAGAGG
CCAACGACTCGCACCCGCCCGGGTAATCACCGCATTTGGTCGAGGGCCTA
ATATAATACGAAGCTCGGCAATCAAAGATTTGGCATTATAATGTAAAATT
TAAAATTTAAACCTGGATAACTTGCCCGCCATTTGAAATCGGTGATTAGC
GTTGCCTTGGCGTCTTGTCATGCTTATTCTACCCCGTTTCGACACTTGTA
ACCAGATTATGATGATGTTTTCTCACAGTGGGAATTATTTGTGGTCAACA
TTTCTCGAAGGCTGGAAACGCT
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Coding sequence (CDS) from alignment at H-elongata_contig7068:1692..9163+

>mRNA_H-elongata_contig7068.14733.1 ID=mRNA_H-elongata_contig7068.14733.1|Name=mRNA_H-elongata_contig7068.14733.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig7068:1692..9163+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCGAAATGATAACCCATTCGATATTCAGATCAAGCTGCTGATGAT
CGGCGACAGCGATGTCGCGAAATGATAACCCATTCGATATTCAGATCAAG
CTGCTGATGATCGGCGACAGCGGTGTGGGGAAGACCTGCCTGCTGCTTCG
CTATGCCAACGACTCTTTTTCGCAGACGTTCATCACCACAATCGGCATCG
ACTTCAAGATAAAAAATATCGACCTGTGTGGGGAAGACCTGCCTGCTGCT
TCGCTATGCCAACGACTCTTTTTCGCAGACGTTCATCACCACAATCGGCA
TCGACTTCAAGATAAAAAATATCGACCTTGATTCCAAGCGAATCAAGCTA
CAGATCTGGGACACCGCTGGGCAAGAGCGCTTTCGCACCATCACGACCTC
TTATTTCCGAGGCGCACAGGGAATCCTTCTCGTTTACGATGTAACGGACA
AGAAGTCCTTTAACTCCATTCGGAACTGGGTGGCACAAATCCAGCAGTGA
TTCCAAGCGAATCAAGCTACAGATCTGGGACACCGCTGGGCAAGAGCGCT
TTCGCACCATCACGACCTCTTATTTCCGAGGCGCACAGGGAATCCTTCTC
GTTTACGATGTAACGGACAAGAAGTCCTTTAACTCCATTCGGAACTGGGT
GGCACAAATCCAGCAGCACGCGGATGTGGCAGTAAACAAGATTTTGATCG
GCAACAAATGCGACATGGACGAGGAACGGGAGCACGCGGATGTGGCAGTA
AACAAGATTTTGATCGGCAACAAATGCGACATGGACGAGGAACGGGAGGT
GAGCAAAGAGGAGGGTGCGCAGCTGGCAGCCGAGTACGGCATCCAGTTCT
TCGAAACAAGCGCCAAGAATGACATTAATGTCGAGAAGGGGTTTATCACC
ATCGCGCGGGAGGTGAAGGACAGGCTCATGGCGGACGGCCCCGGCGGGGC
AGGTGGCCACGGCAGGACGGTGGACATCAACGGCCAAGCCTCGAAGAAGA
AGAGCAGCTGCTGCTAAGTGAGCAAAGAGGAGGGTGCGCAGCTGGCAGCC
GAGTACGGCATCCAGTTCTTCGAAACAAGCGCCAAGAATGACATTAATGT
CGAGAAGGGGTTTATCACCATCGCGCGGGAGGTGAAGGACAGGCTCATGG
CGGACGGCCCCGGCGGGGCAGGTGGCCACGGCAGGACGGTGGACATCAAC
GGCCAAGCCTCGAAGAAGAAGAGCAGCTGCTGCTAA
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