mRNA_H-elongata_contig70679.14732.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70679.14732.1
Unique NamemRNA_H-elongata_contig70679.14732.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70679.14732.1 vs. uniprot
Match: D8LHU5_ECTSI (cAMP-dependent protein kinase regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU5_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 1.810e-55
Identity = 88/114 (77.19%), Postives = 99/114 (86.84%), Query Frame = 1
Query:    7 QVIDSMEEKRYEPGSVIIREGGPGDYFYVTSSGELEVFIAGKNKGSPVRTLKPGDTFGELALMYNSPRTATVKAVTECLVWALDRTTFRHTIMEAGQQRRQKYEHFLSTVSSIR 348
            +V+DSMEE+RY+ G  +I EGGPGD+FYVT SGELEVFIAGKN   P+RTLK GD FGELALMYNSPRTATVKAVT CLVWALDRTTFRHTI+EAGQQRRQKYE FL+ V  ++
Sbjct:   97 EVVDSMEERRYQSGDAVIEEGGPGDFFYVTGSGELEVFIAGKNNDEPLRTLKSGDAFGELALMYNSPRTATVKAVTGCLVWALDRTTFRHTILEAGQQRRQKYEVFLANVEILK 210          
BLAST of mRNA_H-elongata_contig70679.14732.1 vs. uniprot
Match: A0A835Z617_9STRA (Camp-dependent protein kinase regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z617_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.440e-39
Identity = 71/114 (62.28%), Postives = 88/114 (77.19%), Query Frame = 1
Query:    7 QVIDSMEEKRYEPGSVIIREGGPGDYFYVTSSGELEVFIAGKNKGSPVRTLKPGDTFGELALMYNSPRTATVKAVTECLVWALDRTTFRHTIMEAGQQRRQKYEHFLSTVSSIR 348
            +VID+MEEK Y  G+ II+EG  GD FYV +SGE EVFI GKN G+ +RT++ G  FGELALMYN+PR+AT+KAV +   WALDR TFR TIM AGQ RR+KYEHFL+ +  +R
Sbjct:  107 EVIDAMEEKDYAAGACIIQEGHDGDNFYVVASGECEVFIEGKNDGAALRTIRTGGGFGELALMYNAPRSATIKAVGDVKCWALDRVTFRRTIMAAGQARRKKYEHFLNQLELLR 220          
BLAST of mRNA_H-elongata_contig70679.14732.1 vs. uniprot
Match: A0A835Z5U7_9STRA (Camp-dependent protein kinase regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U7_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.050e-35
Identity = 66/114 (57.89%), Postives = 81/114 (71.05%), Query Frame = 1
Query:    7 QVIDSMEEKRYEPGSVIIREGGPGDYFYVTSSGELEVFIAGKNKGSPVRTLKPGDTFGELALMYNSPRTATVKAVTECLVWALDRTTFRHTIMEAGQQRRQKYEHFLSTVSSIR 348
            +V+D+ME+K Y  G  II EG  GD FYV +SGE EVFI GKN G+ +R +K G  FGELALMYN+PR+AT+KA      WALDR TFR TIM AGQ RR+KYE FL  +  ++
Sbjct:   88 EVVDAMEQKDYAAGDTIISEGADGDNFYVIASGECEVFIEGKNDGAALRVMKAGSGFGELALMYNAPRSATIKAKVAVRCWALDRATFRRTIMAAGQARRKKYEQFLVKLDLLK 201          
BLAST of mRNA_H-elongata_contig70679.14732.1 vs. uniprot
Match: A0A4P9XWS4_9FUNG (cAMP-dependent protein kinase regulatory subunit n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XWS4_9FUNG)

HSP 1 Score: 119 bits (297), Expect = 1.450e-29
Identity = 59/110 (53.64%), Postives = 77/110 (70.00%), Query Frame = 1
Query:   10 VIDSMEEKRYEPGSVIIREGGPGDYFYVTSSGELEVFIAGKN-KGSPVRTLKPGDTFGELALMYNSPRTATVKAVTECLVWALDRTTFRHTIMEAGQQRRQKYEHFLSTV 336
            VID+M EK    G V+I++GG GDYFYV  SG LEV+++     G+ V    PG +FGELALMYN+PR ATVKA ++C++WALDR TFR  +ME   ++R+ YE FL  V
Sbjct:  169 VIDAMSEKHVVDGEVVIQQGGIGDYFYVVESGTLEVYVSRDGGPGAKVHEYGPGGSFGELALMYNAPRAATVKATSDCVLWALDRVTFRRILMERTSRKRRMYELFLEEV 278          
BLAST of mRNA_H-elongata_contig70679.14732.1 vs. uniprot
Match: D8S0D3_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S0D3_SELML)

HSP 1 Score: 114 bits (286), Expect = 9.050e-29
Identity = 55/115 (47.83%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   10 VIDSMEEKRYEPGSVIIREGGPGDYFYVTSSGELEVFIAGKNKGSP--VRTLKPGDTFGELALMYNSPRTATVKAVTECLVWALDRTTFRHTIMEAGQQRRQKYEHFLSTVSSIR 348
            V+DS+EE +Y P  +II++G  GD F++   GE EV++    +  P  V+   PGDTFGELAL+YN+PR ATVKA+T C +WA+DR TFR  +M+    +RQ YE FL+ V  ++
Sbjct:   57 VVDSVEEVKYNPNDIIIKQGDEGDKFFLIEIGECEVWLKDPERIRPEMVKRYGPGDTFGELALLYNAPRAATVKAITSCTLWAVDRPTFRAILMQTTNNKRQLYEKFLAEVPLLK 171          
BLAST of mRNA_H-elongata_contig70679.14732.1 vs. uniprot
Match: D8SB21_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SB21_SELML)

HSP 1 Score: 114 bits (286), Expect = 9.050e-29
Identity = 55/115 (47.83%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   10 VIDSMEEKRYEPGSVIIREGGPGDYFYVTSSGELEVFIAGKNKGSP--VRTLKPGDTFGELALMYNSPRTATVKAVTECLVWALDRTTFRHTIMEAGQQRRQKYEHFLSTVSSIR 348
            V+DS+EE +Y P  +II++G  GD F++   GE EV++    +  P  V+   PGDTFGELAL+YN+PR ATVKA+T C +WA+DR TFR  +M+    +RQ YE FL+ V  ++
Sbjct:   57 VVDSVEEVKYNPNDIIIKQGDEGDKFFLIEIGECEVWLKDPERIRPEMVKRYGPGDTFGELALLYNAPRAATVKAITSCTLWAVDRPTFRAILMQTTNNKRQLYEKFLAEVPLLK 171          
BLAST of mRNA_H-elongata_contig70679.14732.1 vs. uniprot
Match: G0R4B7_ICHMG (cGMP-dependent protein kinase n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0R4B7_ICHMG)

HSP 1 Score: 118 bits (295), Expect = 1.590e-28
Identity = 53/115 (46.09%), Postives = 83/115 (72.17%), Query Frame = 1
Query:   10 VIDSMEEKRYEPGSVIIREGGPGDYFYVTSSGELEVFIAGKNKGSP--VRTLKPGDTFGELALMYNSPRTATVKAVTECLVWALDRTTFRHTIMEAGQQRRQKYEHFLSTVSSIR 348
            V+++MEEK+Y+ G  +IR+G  G Y YV   G+L+ F   +N+  P  ++T +P ++FGELAL+YN+PR A++ A TECLVWALDR TF H + +A  ++R+KYE FL+++  ++
Sbjct:  445 VVNAMEEKKYQAGDYVIRQGEEGTYLYVIEKGQLDCFKKYQNQPQPTYLKTYQPSESFGELALLYNAPRAASIVAKTECLVWALDRETFNHIVKDAAMRKREKYEQFLTSLPLLK 559          
BLAST of mRNA_H-elongata_contig70679.14732.1 vs. uniprot
Match: A0A1Y2C8Z2_9FUNG (cAMP-dependent protein kinase regulatory subunit n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2C8Z2_9FUNG)

HSP 1 Score: 113 bits (282), Expect = 2.900e-28
Identity = 57/114 (50.00%), Postives = 79/114 (69.30%), Query Frame = 1
Query:   10 VIDSMEEKRYEPGSVIIREGGPGDYFYVTSSGELEVFIAGKNKGSPVRTLKPGD--TFGELALMYNSPRTATVKAVTECLVWALDRTTFRHTIMEAGQQRRQKYEHFLSTVSSI 345
            V+D+M EKR   G  +I++GG GD+FYV  +G L+VF++ KN   PV+  + GD  +FGELALMYN+PR ATV A +E ++WALDR TFR  +ME   ++R+ YE FL  V  +
Sbjct:   45 VVDAMSEKRVAAGEEVIKQGGVGDFFYVVETGTLDVFVS-KNGNPPVKVYEYGDGGSFGELALMYNAPRAATVVATSESVLWALDRVTFRRILMENTSRKRRMYEGFLEEVKLL 157          
BLAST of mRNA_H-elongata_contig70679.14732.1 vs. uniprot
Match: A0A1Y2FKP9_9FUNG (cAMP-dependent protein kinase regulatory subunit n=2 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2FKP9_9FUNG)

HSP 1 Score: 115 bits (288), Expect = 5.250e-28
Identity = 57/111 (51.35%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   10 VIDSMEEKRYEPGSVIIREGGPGDYFYVTSSGELEVFIAGKNKGSPVRT--LKPGDTFGELALMYNSPRTATVKAVTECLVWALDRTTFRHTIMEAGQQRRQKYEHFLSTV 336
            V+++M EKR   G  +IR+GG GD+FYV  +G L++FI+ KN G PV+     PG +FGELALMYN+PR AT+ A ++C++WALDR TFR  +ME   ++R+ YE FL  V
Sbjct:  219 VVNAMSEKRAVNGDCVIRQGGVGDFFYVVETGTLDIFIS-KNGGQPVKVGDYGPGASFGELALMYNAPRAATIMATSDCILWALDRITFRKILMENTSRKRKMYELFLEEV 328          
BLAST of mRNA_H-elongata_contig70679.14732.1 vs. uniprot
Match: A0A1Y2I493_9FUNG (cAMP-dependent protein kinase regulatory subunit n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2I493_9FUNG)

HSP 1 Score: 114 bits (285), Expect = 6.540e-28
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    4 IQVIDSMEEKRYEPGSVIIREGGPGDYFYVTSSGELEVFIAGKNKGS-PVRTLKPGDTFGELALMYNSPRTATVKAVTECLVWALDRTTFRHTIMEAGQQRRQKYEHFLSTV 336
            + V+++M EKR   G V+IR+GG GDYFYV  +G L+V++   N G   V     G +FGELALMYN+PR AT+KA ++C++WALDR TFR  +M+   ++R+ YE FL  V
Sbjct:  171 LDVVNAMAEKRVPNGEVVIRQGGVGDYFYVVETGTLDVYVNRNNSGDIKVFDYGAGGSFGELALMYNAPRAATIKATSDCVLWALDRVTFRRILMDHTSRKRRMYEGFLEEV 282          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70679.14732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHU5_ECTSI1.810e-5577.19cAMP-dependent protein kinase regulatory subunit n... [more]
A0A835Z617_9STRA1.440e-3962.28Camp-dependent protein kinase regulatory subunit n... [more]
A0A835Z5U7_9STRA1.050e-3557.89Camp-dependent protein kinase regulatory subunit n... [more]
A0A4P9XWS4_9FUNG1.450e-2953.64cAMP-dependent protein kinase regulatory subunit n... [more]
D8S0D3_SELML9.050e-2947.83Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
D8SB21_SELML9.050e-2947.83Uncharacterized protein n=1 Tax=Selaginella moelle... [more]
G0R4B7_ICHMG1.590e-2846.09cGMP-dependent protein kinase n=1 Tax=Ichthyophthi... [more]
A0A1Y2C8Z2_9FUNG2.900e-2850.00cAMP-dependent protein kinase regulatory subunit n... [more]
A0A1Y2FKP9_9FUNG5.250e-2851.35cAMP-dependent protein kinase regulatory subunit n... [more]
A0A1Y2I493_9FUNG6.540e-2849.11cAMP-dependent protein kinase regulatory subunit n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70679contigH-elongata_contig70679:1380..3089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue5.7e-45
Seed eggNOG ortholog2880.D8LHU5
KEGG koko:K04739
KEGG Pathwayko04910,map04910
EggNOG free text desc.cAMP-dependent protein kinase regulator activity
EggNOG OGsCOG0664@1,KOG1113@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons3
Model size351
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70679.14732.1prot_H-elongata_contig70679.14732.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70679 1380..3089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931105.9450057-CDS-H-elongata_contig70679:1379..14931622931105.9450057-CDS-H-elongata_contig70679:1379..1493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70679 1380..1493 +
1691679700.479951-CDS-H-elongata_contig70679:1379..14931691679700.479951-CDS-H-elongata_contig70679:1379..1493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70679 1380..1493 +
1622931105.9613733-CDS-H-elongata_contig70679:2396..25071622931105.9613733-CDS-H-elongata_contig70679:2396..2507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70679 2397..2507 +
1691679700.5059414-CDS-H-elongata_contig70679:2396..25071691679700.5059414-CDS-H-elongata_contig70679:2396..2507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70679 2397..2507 +
1622931105.9728558-CDS-H-elongata_contig70679:2963..30891622931105.9728558-CDS-H-elongata_contig70679:2963..3089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70679 2964..3089 +
1691679700.5191035-CDS-H-elongata_contig70679:2963..30891691679700.5191035-CDS-H-elongata_contig70679:2963..3089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70679 2964..3089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70679.14732.1

>prot_H-elongata_contig70679.14732.1 ID=prot_H-elongata_contig70679.14732.1|Name=mRNA_H-elongata_contig70679.14732.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MIQVIDSMEEKRYEPGSVIIREGGPGDYFYVTSSGELEVFIAGKNKGSPV
RTLKPGDTFGELALMYNSPRTATVKAVTECLVWALDRTTFRHTIMEAGQQ
RRQKYEHFLSTVSSIRQ
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mRNA from alignment at H-elongata_contig70679:1380..3089+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70679.14732.1 ID=mRNA_H-elongata_contig70679.14732.1|Name=mRNA_H-elongata_contig70679.14732.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1710bp|location=Sequence derived from alignment at H-elongata_contig70679:1380..3089+ (Himanthalia elongata Himel1 dioecious)
ATGATACAGGTGATTGACTCCATGGAGGAAAAGCGATACGAACCGGGTAG TGTTATCATTCGGGAAGGTGGTCCCGGTGATTACTTTTACGTCACAAGCT CGGGCGAGCTCGAGGTACGCGGCGGCGTTAGCCTTCGTCGCACACGCGCG GTGGCAGAGCCTTCTTATCGATCACGCTTCGTTCCCACAAGGGGTTGACC GGTCGATAAAACGTCGCTGGCATCAAATTTGAACAACACTTATATTCACG GCAATTAACAAGGTGAAACCTTTAAGAGATGCAAGATCCTGGAACCATAC CCCTAGAAGATATGGCGATTACCCTATAACTTCAAAATGACGTATGCGAT TTTGAGTTTTTTTCTGCTCGTTGACCGCACCCTCAAGGCGGTCATAGATG ATCCACTGTAAAAGATTTCAATCGGCAGTCTTCGGTTCCAAAATCGCCAA AAAATACTCAGTCTCCTTTTCTAAATCGAGTCTTCATTTCACCAATATAC TTGTACTTGCTACGCCAATTCGAACATGATATGGGTAAGTTGAGCACATA TACATTCAGGGGAATACCACAAAGGGACTTTTATCCCCGCGTAAACGCAT AAGCACCGCACGGACACAACATTCACAGTTTTTATAAATTAAGACTATAT AGCATGATCATGAATACTCATGGCAGACCAATCTCATAAGTCTATGGTTA TTCTGGGGCTTTTCAACAGTACATTGTTCAGTAGGCATCCTATAGAATGT TATGAATATGTGAAGCAATTCACTCCTTTGGGAAGAGGCAAGACTCTTCG ACTGAGATCTCTGAGCTCGCAGGACATGTTGCATAAACTTCCCCATGCCC TCTAAACAGCAGTCTCACAACCACATACCGCAAAAGCCAACTGTGGGGTG GGGAGGAGGGGGCGGGGGACGTCCTCAATTTTTGCATACCTTATAGGTTA TACCAGTGACCGCGCGTCGGGGGGACGAAATGTAATCAAACTCTGGTCCC AATACTAATTTCAACAGGTATTTATCGCAGGAAAGAACAAAGGCAGCCCT GTTCGTACTCTCAAACCTGGGGACACTTTTGGAGAGCTGGCCCTCATGTA CAACTCCCCGCGCACGGCAACCGTCAAGGTACCTCTACCTGATTGACTTC CTTCTAAAAATTAGCTCATTTGTATCGATTCTACACTCGGCGGGGAGTTA TATCAAATTTGGGAGGCAAATGGTTTAAACCACCCCCATTCGTCGGGACC AAGCGGTCGATTTCACCATACACCGAGCACAGATAATCATCAAATTATCC TTTCCTGTGGAGGGTGTTTGAGAACCCTTCGTGCGACGAGAGTCGTGAAT ACGCAGTTTCACCCCCTTGATTTACCCTTTGGGTGGCACCCGTTCACTTG TTCATTCAAGAAAAGTACACTCGTAGCTACTATGGTGCCGATGGAAGGCA GTCACGATGTTCGGGAAGACGTTCAGTACAATATCCGTCCATCAAGTACC ATCAATCCGTAGCCACCGAACCGGGTCGCTTTCTTCTCAGAATACGCGCG TTTTTCGTTGCGTCGCCCGCTTGTACAAGGGTAGGCAGTCACAGAATGCC TGGTTTGGGCGCTAGACCGCACAACCTTCCGCCACACCATAATGGAGGCC GGTCAGCAGCGTCGCCAGAAATACGAGCACTTTCTCTCCACCGTGAGTTC GATAAGACAA
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Coding sequence (CDS) from alignment at H-elongata_contig70679:1380..3089+

>mRNA_H-elongata_contig70679.14732.1 ID=mRNA_H-elongata_contig70679.14732.1|Name=mRNA_H-elongata_contig70679.14732.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig70679:1380..3089+ (Himanthalia elongata Himel1 dioecious)
ATGATACAGGTGATTGACTCCATGGAGGAAAAGCGATACGAACCGGGTAG
TGTTATCATTCGGGAAGGTGGTCCCGGTGATTACTTTTACGTCACAAGCT
CGGGCGAGCTCGAGATGATACAGGTGATTGACTCCATGGAGGAAAAGCGA
TACGAACCGGGTAGTGTTATCATTCGGGAAGGTGGTCCCGGTGATTACTT
TTACGTCACAAGCTCGGGCGAGCTCGAGGTATTTATCGCAGGAAAGAACA
AAGGCAGCCCTGTTCGTACTCTCAAACCTGGGGACACTTTTGGAGAGCTG
GCCCTCATGTACAACTCCCCGCGCACGGCAACCGTCAAGGTATTTATCGC
AGGAAAGAACAAAGGCAGCCCTGTTCGTACTCTCAAACCTGGGGACACTT
TTGGAGAGCTGGCCCTCATGTACAACTCCCCGCGCACGGCAACCGTCAAG
GCAGTCACAGAATGCCTGGTTTGGGCGCTAGACCGCACAACCTTCCGCCA
CACCATAATGGAGGCCGGTCAGCAGCGTCGCCAGAAATACGAGCACTTTC
TCTCCACCGTGAGTTCGATAAGACAAGCAGTCACAGAATGCCTGGTTTGG
GCGCTAGACCGCACAACCTTCCGCCACACCATAATGGAGGCCGGTCAGCA
GCGTCGCCAGAAATACGAGCACTTTCTCTCCACCGTGAGTTCGATAAGAC
AA
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