mRNA_H-elongata_contig70621.14723.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70621.14723.1
Unique NamemRNA_H-elongata_contig70621.14723.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70621.14723.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 7.200e-31
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 1
Query:    1 LDPLDWWRVKSTDFPHLAILARRVLVIPATQAESERLFSCTENIVTKNRNKLASSTIELLLLLRHSW 201
            LDPLDWWRV+  DFPHLA LARRVL IPATQAESERLFSC  NIVTKNRN LA +T+ELL+LLRHSW
Sbjct:  221 LDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSW 287          
BLAST of mRNA_H-elongata_contig70621.14723.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.140e-23
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 1
Query:   31 STDFPHLAILARRVLVIPATQAESERLFSCTENIVTKNRNKLASSTIELLLLLRHSW 201
            STDFPHLA LARRVL IPATQA+SERLFSC  NIVTKNRN LA +T+ELL+LLRHSW
Sbjct:  151 STDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSW 207          
BLAST of mRNA_H-elongata_contig70621.14723.1 vs. uniprot
Match: A0A420IYG9_9PEZI (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Golovinomyces cichoracearum TaxID=62708 RepID=A0A420IYG9_9PEZI)

HSP 1 Score: 72.0 bits (175), Expect = 2.650e-14
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    4 DPLDWWRVKSTDFPHLAILARRVLVIPATQAESERLFSCTENIVTKNRNKLASSTIELLLLLRHSW 201
            DPL +W+  S+  P LAILARRVL IPAT A  ER FS + NI+T+NR +L  +T++ L+LL+ SW
Sbjct:   58 DPLLYWKNNSSRLPILAILARRVLAIPATSASIERAFSVSNNIITRNRTRLLPNTVKKLILLK-SW 122          
BLAST of mRNA_H-elongata_contig70621.14723.1 vs. uniprot
Match: UPI000EFF4741 (zinc finger BED domain-containing protein 1 n=1 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=UPI000EFF4741)

HSP 1 Score: 70.5 bits (171), Expect = 1.840e-13
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 LDPLDWWRVKSTDFPHLAILARRVLVIPATQAESERLFSCTENIVTKNRNKLASSTIELLLLL 189
            +DPL WW++   DFPHL+ILAR+ L IPA+ + SERLFS + N+VT  R  L  + + +L+ L
Sbjct:  118 MDPLTWWQLHQVDFPHLSILARKYLCIPASSSPSERLFSTSGNVVTCQRTCLKPTQVNMLVFL 180          
BLAST of mRNA_H-elongata_contig70621.14723.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.830e-13
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    7 PLDWWRVKSTDFPHLAILARRVLVIPATQAESERLFSCTENIVTKNRNKLASSTIELLLLLRHS 198
            PL+WWRVK+ ++P LA LARRVL IPA QA+SER+FS    +VTK R ++    + L++ LR++
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543          
BLAST of mRNA_H-elongata_contig70621.14723.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 7.130e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    4 DPLDWWRVKSTDFPHLAILARRVLVIPATQAESERLFSCTENIVTKNRNKLASSTIELLLLLRHSW 201
            +PLD WR K  ++P LA LARRVL IP++QA+SER+FS     VT  R++L    +ELL+ LR+ W
Sbjct:  482 NPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVW 547          
BLAST of mRNA_H-elongata_contig70621.14723.1 vs. uniprot
Match: UPI001C19FC94 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19FC94)

HSP 1 Score: 69.7 bits (169), Expect = 9.300e-13
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    4 DPLDWWRVKSTDFPHLAILARRVLVIPATQAESERLFSCTENIVTKNRNKLASSTIELLLLLRHSW 201
            DPL+WW+V  + FPHL+ +AR  L IPAT   SE+ FS  +N++T  RN LA  TI + + L+  W
Sbjct:  176 DPLEWWKVNESQFPHLSQMARDYLPIPATSVLSEQSFSVGKNLITDKRNCLACKTIRICMYLQSWW 241          
BLAST of mRNA_H-elongata_contig70621.14723.1 vs. uniprot
Match: UPI001C147A06 (Hypothetical protein n=14 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C147A06)

HSP 1 Score: 70.9 bits (172), Expect = 9.760e-13
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    4 DPLDWWRVKSTDFPHLAILARRVLVIPATQAESERLFSCTENIVTKNRNKLASSTIELLLLLRHSW 201
            DPL+WW+V  + FPHL+ +AR  L IPAT   SE+ FS  +N++T  RN LA  TI + + L+  W
Sbjct:  530 DPLEWWKVNESQFPHLSQMARDYLPIPATSVPSEQSFSVGKNLITDKRNCLAGKTIRICMCLQSWW 595          
BLAST of mRNA_H-elongata_contig70621.14723.1 vs. uniprot
Match: A0A6I8U4U8_AEDAE (BED-type domain-containing protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=A0A6I8U4U8_AEDAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.340e-12
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 LDPLDWWRVKSTDFPHLAILARRVLVIPATQAESERLFSCTENIVTKNRNKLASSTIELLLLLRHSW 201
            +D L WW+     FP LA  ARR+L IPAT A SER+FSC+ NI+T  R++LAS  +E+L+ ++ ++
Sbjct:  665 VDVLQWWKKNERVFPCLAKCARRILGIPATSAPSERVFSCSGNIMTSQRHQLASKNLEMLVYIKQNF 731          
BLAST of mRNA_H-elongata_contig70621.14723.1 vs. uniprot
Match: UPI001C135AA7 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C135AA7)

HSP 1 Score: 70.1 bits (170), Expect = 1.770e-12
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    4 DPLDWWRVKSTDFPHLAILARRVLVIPATQAESERLFSCTENIVTKNRNKLASSTIELLLLLRHSW 201
            DPL+WW+V  + FPHL  +AR  L IPAT   SE+ FS  +N++T  RN LA  TI + + L+  W
Sbjct:  371 DPLEWWKVNESQFPHLLQMARDYLPIPATSVPSEQSFSVGKNLITDKRNCLAGKTIRICMCLQSWW 436          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70621.14723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE7.200e-3182.09Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE2.140e-2382.46Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A420IYG9_9PEZI2.650e-1454.55Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI000EFF47411.840e-1349.21zinc finger BED domain-containing protein 1 n=1 Ta... [more]
A0A6H5JHP9_9PHAE2.830e-1351.56Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI7.130e-1351.52Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
UPI001C19FC949.300e-1346.97Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI001C147A069.760e-1346.97Hypothetical protein n=14 Tax=Rhizophagus irregula... [more]
A0A6I8U4U8_AEDAE1.340e-1247.76BED-type domain-containing protein n=1 Tax=Aedes a... [more]
UPI001C135AA71.770e-1246.97Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70621contigH-elongata_contig70621:1870..2070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931105.0181782-CDS-H-elongata_contig70621:1869..20701622931105.0181782-CDS-H-elongata_contig70621:1869..2070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70621 1870..2070 +
1691679699.9829428-CDS-H-elongata_contig70621:1869..20701691679699.9829428-CDS-H-elongata_contig70621:1869..2070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70621 1870..2070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70621.14723.1prot_H-elongata_contig70621.14723.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70621 1870..2070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70621.14723.1

>prot_H-elongata_contig70621.14723.1 ID=prot_H-elongata_contig70621.14723.1|Name=mRNA_H-elongata_contig70621.14723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
LDPLDWWRVKSTDFPHLAILARRVLVIPATQAESERLFSCTENIVTKNRN
KLASSTIELLLLLRHSW
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mRNA from alignment at H-elongata_contig70621:1870..2070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70621.14723.1 ID=mRNA_H-elongata_contig70621.14723.1|Name=mRNA_H-elongata_contig70621.14723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig70621:1870..2070+ (Himanthalia elongata Himel1 dioecious)
CTCGACCCCTTGGACTGGTGGCGGGTGAAGAGTACCGACTTCCCGCACTT GGCCATTCTCGCCCGCCGTGTCCTCGTCATCCCCGCCACACAGGCGGAGT CGGAGCGCCTGTTCTCCTGCACAGAAAACATTGTGACCAAGAATCGCAAC AAGCTGGCTTCAAGCACCATCGAGTTGCTTCTTCTGCTGCGCCACTCGTG G
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Coding sequence (CDS) from alignment at H-elongata_contig70621:1870..2070+

>mRNA_H-elongata_contig70621.14723.1 ID=mRNA_H-elongata_contig70621.14723.1|Name=mRNA_H-elongata_contig70621.14723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig70621:1870..2070+ (Himanthalia elongata Himel1 dioecious)
CTCGACCCCTTGGACTGGTGGCGGGTGAAGAGTACCGACTTCCCGCACTT
GGCCATTCTCGCCCGCCGTGTCCTCGTCATCCCCGCCACACAGGCGGAGT
CGGAGCGCCTGTTCTCCTGCACAGAAAACATTGTGACCAAGAATCGCAAC
AAGCTGGCTTCAAGCACCATCGAGTTGCTTCTTCTGCTGCGCCACTCGTG
GCTCGACCCCTTGGACTGGTGGCGGGTGAAGAGTACCGACTTCCCGCACT
TGGCCATTCTCGCCCGCCGTGTCCTCGTCATCCCCGCCACACAGGCGGAG
TCGGAGCGCCTGTTCTCCTGCACAGAAAACATTGTGACCAAGAATCGCAA
CAAGCTGGCTTCAAGCACCATCGAGTTGCTTCTTCTGCTGCGCCACTCGT
GG
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