mRNA_H-elongata_contig7062.14722.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7062.14722.1
Unique NamemRNA_H-elongata_contig7062.14722.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7062.14722.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 374 bits (961), Expect = 7.010e-124
Identity = 193/407 (47.42%), Postives = 255/407 (62.65%), Query Frame = 1
Query:  112 LDVQTTFPNADVEEEVYVKMAPGYETSDKS-GVPFVIKLKKSLYGLQQSPKNWFSTMDDHLSTIGFRSPKSDSCVYMFEYKTGNAILTLYVDAILLLSKNKQLLGKLKKQLTGHFDIKDLGDVSNVLGMN----------------------------------------------PADRRLDKQGKKIYQPITGALMYLAQASRYDILYAINQLVRAISKPSKAHMGAAKHVLRYLTGATNFSIAYRRGGFKLVTYTDANWGGNPDNGRSTSSYIVILANGPISFKVGLQSLTAQSTIEVELVAAVTAMKESLFCANMIMELGFTEGFQSVPVYIGNTSALHVSGNRTFSPRAKQIALRYFFVQELVKEGQVTIHFVNTEHQLADLGRKYLKKHRHHFFIKLVNEF 1191
            +DV T F  AD++EEV+V+  PG+E  DK  G   V+KL KSLYGL QSP NWF+T+D  +  IGF + KSD CVY++++      LTLYVD +LL   +   +  +K +L   F + DLG+ S VLGM                                               P D  LD++  + YQ I G+LMY+AQ  RYDI+YA  QL R ++KPSK HM AAKH LRYL G  +FSI Y++GGFKL T++D+NW  NPDNG+STSSY+ +LAN P+SF+ GLQ LTA ST+E ELVA+  AMKE++FC+NM+ ELGF + F  +PVY  NT+ LH  GNR+FS R K IALR+FF++ELV EG+++IH+  TE  LAD+G K+  KHR    + L+N F
Sbjct:   29 MDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_H-elongata_contig7062.14722.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 365 bits (938), Expect = 1.310e-117
Identity = 197/421 (46.79%), Postives = 258/421 (61.28%), Query Frame = 1
Query:  112 LDVQTTFPNADVEEEVYVKMAPGYETSDKSGVPFVIKLKKSLYGLQQSPKNWFSTMDDHLSTIGFRSPKSDSCVYMFEYKTGNAILTLYVDAILLLSKN----KQLL-------------GKLKKQLTGHFDIKDLGDVSNVLGMN----------------------------------------------PADRRLDKQGKKIYQPITGALMYLAQASRYDILYAINQLVRAISKPSKAHMGAAKHVLRYLTGATNFSIAYRRGGFKLVTYTDANWGGNPDNGRSTSSYIVILANGPISFKVGLQSLTAQSTIEVELVAAVTAMKESLFCANMIMELGFTEGFQSVPVYIGNTSALHVSGNRTFSPRAKQIALRYFFVQELVKEGQVTIHFVNTEHQLADLGRKYLKKHRHHFFIKLVN 1185
            +DV T F  AD++EEV+V+  PG+E  DK G   V+KL KSLYGL QSP NWF+T+D  L  IGF + KSD CVY++++      LTLYVD +LL   +    K LL             GKL+K+    F + DLG+ S  LGM                                               P D  LD++  + YQ I G+LMY+AQ  RYDI+YA  QL R+++KPSK HM AAKH LRYL G  +FSI Y++GGFKL T++D+NW  NPDNG+STSSY+ +LAN P+SF+ GLQ LTA ST+E ELVA+  AMKE++FC+NM+ ELG  + F  +PVY  NT+ LH  GNR+FS R K IALR+FF++ELV EG+++IH+V TE  LAD+G K+  KHR    + L+N
Sbjct:  238 MDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKR----FKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654          
BLAST of mRNA_H-elongata_contig7062.14722.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 376 bits (965), Expect = 2.080e-114
Identity = 193/406 (47.54%), Postives = 254/406 (62.56%), Query Frame = 1
Query:  112 LDVQTTFPNADVEEEVYVKMAPGYETSDKSGVPFVIKLKKSLYGLQQSPKNWFSTMDDHLSTIGFRSPKSDSCVYMFEYKTGNAILTLYVDAILLLSKNKQLLGKLKKQLTGHFDIKDLGDVSNVLGMN----------------------------------------------PADRRLDKQGKKIYQPITGALMYLAQASRYDILYAINQLVRAISKPSKAHMGAAKHVLRYLTGATNFSIAYRRGGFKLVTYTDANWGGNPDNGRSTSSYIVILANGPISFKVGLQSLTAQSTIEVELVAAVTAMKESLFCANMIMELGFTEGFQSVPVYIGNTSALHVSGNRTFSPRAKQIALRYFFVQELVKEGQVTIHFVNTEHQLADLGRKYLKKHRHHFFIKLVNEF 1191
            +DV T F  AD++EEV+V+  PG+E  DK G   V+KL KSLYGL QSP NWF+T+D  L  IGF + KSD CVY++++      LTLYVD +LL   +   +  +K +L   F + DLG+ S VLGM                                               P D  LD++  + YQ I G+LMY+AQ  RYDI+YA  QL R ++KPSK HM AAKH LRYL G  +FSI Y++GGFKL T++D+NW  NPDNG+STSSY+ +LAN P+SF+ GLQ LTA ST+E ELVA+  AM E++F +NM+ ELGF + F  +PVY  NT+ LH  GNR+FS R K IALR+FF++ELV EG+++IH+V TE  LAD+G K+  KHR    + L+N F
Sbjct: 1259 MDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_H-elongata_contig7062.14722.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 350 bits (897), Expect = 3.070e-110
Identity = 193/468 (41.24%), Postives = 271/468 (57.91%), Query Frame = 1
Query:    1 MSLPQVAQWKAAADKKIACLKKQGVYELVP-----LGY-----------------------------------------------------------DMFMLDVQTTFPNADVEEEVYVKMAPGYETSDKSGVPFVIKLKKSLYGLQQSPKNWFSTMDDHLSTIGFRSPKSDSCVYMFEYKTGNAILTLYVDAILLLSKNKQLL-GKLKKQLTGHFDIKDLGDVSN------VLGMNPADRRLDKQGKKIYQPITGALMYLAQASRYDILYAINQLVRAISKPSKAHMGAAKHVLRYLTGATNFSIAYRRGGFKLVTYTDANWGGNPDNGRSTSSYIVILANGPISFKVGLQSLTAQSTIEVELVAAVTAMKESLFCANMIMELGFTEGFQSVPVYIGNTSALHVSGNRTFSPRAKQIALRYFFVQELVKEGQVTIHFVNTEHQLADLGRKYLKKHRHHFFIKLVNEF 1191
            M LP+   WKAA DK+I  L+   VY+LVP     LG+                                                           D+  LDV+T F  AD+EE V+V+MAPGYE  +   +  V+KL+KSL GL QSP++W  T+D  L  IGF   KSD+CVY++++     +LTLYVD +L++        G     +   F +     +S       +    P +  L+ +GK+ YQ I G++MYLAQ +RYDI+Y  +Q  RA+S PSK HMGAAKH+LRYL+G+ +FSI Y+RGGF L   ++AN G N DNG+S SSYI++++  P S K GLQSLTA ST+E ELVA+  AMKE +FC NM+ ELGF   F S P++I +T+ L+V GN+TFS   K +ALR+F+++++VKEG+++IH++ TE  LAD+G +YL K RH + I  +  F
Sbjct:  309 MELPETKLWKAATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLIIRGGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776          
BLAST of mRNA_H-elongata_contig7062.14722.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 344 bits (883), Expect = 4.330e-106
Identity = 196/478 (41.00%), Postives = 267/478 (55.86%), Query Frame = 1
Query:   10 PQVAQWKAAADKKIACLKKQGVYELVPL-------------------------------GYDMFM-LDVQTTF-PNADVEEE-----VYVKMAPGYETSDKSGVPFVIKLKKSLYGLQQSPKNWFSTMDDHLSTIGFRSPKSDSCVYMFEYKTGNAILTLYVDAILLLSKNKQLLGKLKKQLTGHFDIKDLGDVSNVLGMN----------------------------------------------PADRRLDKQGKKIYQPITGALMYLAQASRYDILYAINQLVRAISKPSKAHMGAAKHVLRYLTGATNFSIAYRRGGFKLVTYTDANWGGNPDNGRSTSSYIVILANGPISFKVGLQSLTAQSTIEVELVAAVTAMKESLFCANMIMELGFTEGFQSVPVYIGNTSALHVSGNRTFSPRAKQIALRYFFVQELVKEGQVTIHFVNTEHQLADLGRKYLKKHRHHFFIKLVNEF 1191
            P   +W AAA++++  L  + VY+LVP                                G++    LD  +T+ P   ++       + V     ++  D  G   V+KL KSLYGL QSP NWF+T+D  L  IGF + KSD CVY++++      LTLYVD +LL   +   +  +K +L   F + DLG+ S VL M                                               P D  LD++  + YQ I G+LMY+AQ  RYDI+YA  QL R ++KPSK HM AAKH LRYL G  +FSI Y++GGFKL T++D+NW  NPDNG+STSSY+ +LAN P+SF+ GLQ LTA ST+E ELVA+  AMKE++FC+NM+ ELGF + F  +PVY  NT+ LH  GNR+FS R K IALR+FF++ELV EG+++IH+V TE  LAD+G K+   HR    + L+N F
Sbjct:  519 PDATKWNAAAEREMKSLSDRKVYKLVPRSGVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVDFNLIFDQMDDGG-DMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
BLAST of mRNA_H-elongata_contig7062.14722.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 337 bits (864), Expect = 1.130e-105
Identity = 191/450 (42.44%), Postives = 263/450 (58.44%), Query Frame = 1
Query:   19 AQWKAAADKKIACLKKQGVYELV-----PLG----------------------YDMFM--LDVQTTFPNADVEEEVYVKMAPGYETSDKSGVPFVIKLKKSLYGLQQSPKNWFSTMDDHLSTIGFRSPKSDSCVYMFEYKTGNAILTLYVDAILLLSKNKQLL-----------------GKLK-------KQLTGHFDIKDLGDVSNV-LG-----MNPADRRLDKQGKKIYQPITGALMYLAQASRYDILYAINQLVRAISKPSKAHMGAAKHVLRYLTGATNFSIAYRRGGFKLVTYTDANWGGNPDNGRSTSSYIVILANGPISFKVGLQSLTAQSTIEVELVAAVTAMKESLFCANMIMELGFTEGFQSVPVYIGNTSALHVSGNRTFSPRAKQIALRYFFVQELVKEGQVTIHFVNTEHQLADLGRKYLKKHRHHFFIKLVNEF 1191
            AQW AAA+++IA LK + VY+LV     P G                      +D+ +  +DV   F  AD++E+VYV+  PG+E   ++G   V+ L+KSLY L QSP NWF T+D  L +IGF   K D CVY +++      LTL VD +LL   N   L                 G L        K +   F +      S   LG     + P +  L+++  + YQ I G L+YL+Q  RYDI+YA +QL R ++KPSK HMGAAK   RYL G T F I Y+RGGFKL  +TD+NWG NPDNG+STSS++ +L + P++FK GLQSLT QST+EVELVAA  A+KE++FC+N++ ELGF +    VP+Y  NT+ LH  GNR++S   K IALR+FF++ELV EG++ IH+V  +   AD+G K+L K R    + ++  F
Sbjct:  269 AQWIAAAEREIADLKDRKVYKLVLRSTVPRGRRRINFRWVTQSVRVLLCITVEFDLIIVQMDVTAAFLYADIQEDVYVEQPPGFEVKGENGEDLVMLLQKSLYWLAQSPGNWFHTIDPFLISIGFVPLKPDPCVYFYDHDGSQMYLTLSVDDLLLAGNNSDALSIASLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNF 718          
BLAST of mRNA_H-elongata_contig7062.14722.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 1.090e-94
Identity = 169/414 (40.82%), Postives = 246/414 (59.42%), Query Frame = 1
Query:   97 YDMFMLDVQTTFPNADVEEEVYVKMAPGYETSDKS-GVPFVIKLKKSLYGLQQSPKNWFSTMDDHLSTIGFRSPKSDSCVYMFEYKTGN--AILTLYVDAILLLSKNKQLLGKLKKQLTGHFDIKDLGDVSNVLGMN----------------------------------------------PADRRLDKQGKKIYQPITGALMYLAQASRYDILYAINQLVRAISKPSKAHMGAAKHVLRYLTGATNFSIAYRRGGFKLVTYTDANWGGNPDNGRSTSSYIVILANGPISFKVGLQSLTAQSTIEVELVAAVTAMKESLFCANMIMELGFTEGFQSVPVYIGNTSALHVSGNRTFSPRAKQIALRYFFVQELVKEGQVTIHFVNTEHQLADLGRKYLKKHRHHFFIKLVNEF 1191
            + ++ LDV   F NA  +  VYV+ APG    + + G P V KL++SLYGL QSP  W  T+D+ L+  G++  +SD CVY+  Y +GN   ILT+YVD IL+   ++QL+ + KK+LT  F++ D+G+V  +LG++                                              P D+ L    KKIYQ +TG+++YLAQ +++D+ YA  QL +A S P++ +M AAKHVLRYL G     I Y+RG F+L  +TD+++G NPDNGRST+ Y+  LA G IS+    Q+LTAQST+E E+ A   + +E+++ +N + EL F + F SVP+   +T AL V+GN   S R K +ALRYFF++ELV  GQ+T+H   +EHQLAD+  KYL KHR    I+ + +F
Sbjct:   81 WPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYV--YTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDF 491          
BLAST of mRNA_H-elongata_contig7062.14722.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 9.110e-92
Identity = 168/414 (40.58%), Postives = 246/414 (59.42%), Query Frame = 1
Query:   97 YDMFMLDVQTTFPNADVEEEVYVKMAPGYETSDKS-GVPFVIKLKKSLYGLQQSPKNWFSTMDDHLSTIGFRSPKSDSCVYMFEYKTGN--AILTLYVDAILLLSKNKQLLGKLKKQLTGHFDIKDLGDVSNVLGMN----------------------------------------------PADRRLDKQGKKIYQPITGALMYLAQASRYDILYAINQLVRAISKPSKAHMGAAKHVLRYLTGATNFSIAYRRGGFKLVTYTDANWGGNPDNGRSTSSYIVILANGPISFKVGLQSLTAQSTIEVELVAAVTAMKESLFCANMIMELGFTEGFQSVPVYIGNTSALHVSGNRTFSPRAKQIALRYFFVQELVKEGQVTIHFVNTEHQLADLGRKYLKKHRHHFFIKLVNEF 1191
            + ++ LDV   F NA  + +VYV+ APG    + + G P V KL++SLYGL QS   W  T+D+ L+ +G++  +SD CVY+  Y +GN   ILT+YVD IL+   ++QL+ + KK+LT  F++ D+G+V  +LG++                                              P D+ L    KKIYQ + G+++YLAQ +R+D+ YA  QL +A S P++ +M AAKHVLRYL G     I Y+RG F+L  +TD+++G NPDNGRST+ Y+  LA G IS+    Q+LTAQST+E E+ A   + +E+++ +N + EL F + F SVP+   +T AL V+GN   S R K +ALRYFF++ELV  GQ+T+H   +EHQLAD+  KYL KHR    I+ + +F
Sbjct:  289 WPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYV--YTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDF 699          
BLAST of mRNA_H-elongata_contig7062.14722.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 1.550e-91
Identity = 169/414 (40.82%), Postives = 246/414 (59.42%), Query Frame = 1
Query:   97 YDMFMLDVQTTFPNADVEEEVYVKMAPGYETSDKS-GVPFVIKLKKSLYGLQQSPKNWFSTMDDHLSTIGFRSPKSDSCVYMFEYKTGN--AILTLYVDAILLLSKNKQLLGKLKKQLTGHFDIKDLGDVSNVLGMN----------------------------------------------PADRRLDKQGKKIYQPITGALMYLAQASRYDILYAINQLVRAISKPSKAHMGAAKHVLRYLTGATNFSIAYRRGGFKLVTYTDANWGGNPDNGRSTSSYIVILANGPISFKVGLQSLTAQSTIEVELVAAVTAMKESLFCANMIMELGFTEGFQSVPVYIGNTSALHVSGNRTFSPRAKQIALRYFFVQELVKEGQVTIHFVNTEHQLADLGRKYLKKHRHHFFIKLVNEF 1191
            + ++ LDV   F NA  + +VYV+ APG    + + G P V KL++SLYGL QSP  W  T+D+ L+  G++  +SD CVY+  Y +GN   ILT+YVD IL+   ++QL+ + KK+LT  F++ D+G+V  +LG++                                              P D+ L    KKIYQ +TG+++YLAQ +R+D+ YA  QL +A S P++ +M AAKHVLRYL G     I Y+RG F+L  +TD+++G NPDNGRST+ Y+  LA G IS+    Q+LTAQST+E E+ A   + +E+++ +N + EL F + F SVP+   +T AL V+GN   S R K + LRYFF++ELV  GQ+T+H   +EHQLAD+  KYL KHR    I+ + +F
Sbjct:  445 WPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYV--YTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDF 855          
BLAST of mRNA_H-elongata_contig7062.14722.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 1.580e-84
Identity = 154/374 (41.18%), Postives = 221/374 (59.09%), Query Frame = 1
Query:  214 VIKLKKSLYGLQQSPKNWFSTMDDHLSTIGFRSPKSDSCVYMFEYKTGN--AILTLYVDAILLLSKNKQLLGKLKKQLTGHFDIKDLGDVSNVLGMN----------------------------------------------PADRRLDKQGKKIYQPITGALMYLAQASRYDILYAINQLVRAISKPSKAHMGAAKHVLRYLTGATNFSIAYRRGGFKLVTYTDANWGGNPDNGRSTSSYIVILANGPISFKVGLQSLTAQSTIEVELVAAVTAMKESLFCANMIMELGFTEGFQSVPVYIGNTSALHVSGNRTFSPRAKQIALRYFFVQELVKEGQVTIHFVNTEHQLADLGRKYLKKHRHHFFIKLVNEF 1191
            V KL++SLYGL QSP  W  T+D+ L+  G++  +SD CVY+  Y TGN   ILT+YVD IL+   ++QL+ + KK+LT  F++ D+G+V  +LG+                                               P D+ L    KK YQ +TG+++YLAQ +R+D+ YA  QL +A S P++ +M AAKHVLRYL G     I Y+RG F+L  +TD+++G NPDNGRST+ Y+  LA G IS+    Q+LTAQST+E E+ A   + +E+++ +N + EL F + F SVP+   +T AL V+GN   S R   +ALR FF++ELV  GQ+T+H   +EHQLAD+  KYL KHR    I+ + +F
Sbjct:    2 VYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYV--YTTGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNF-KTFGSVPINSDSTGALTVAGNAMHSQRTN-VALRCFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDF 371          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7062.14722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE7.010e-12447.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE1.310e-11746.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE2.080e-11447.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R7_9PHAE3.070e-11041.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNH5_9PHAE4.330e-10641.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG39_9PHAE1.130e-10542.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQD0_9PHAE1.090e-9440.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE9.110e-9240.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.550e-9140.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KUJ3_9PHAE1.580e-8441.18Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7062contigH-elongata_contig7062:6715..8244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score207.6
Seed ortholog evalue1.1e-50
Seed eggNOG ortholog4081.Solyc11g062200.1.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1200
Cds size1200
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7062.14722.1prot_H-elongata_contig7062.14722.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7062 6715..8244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931104.9387004-CDS-H-elongata_contig7062:6714..68041622931104.9387004-CDS-H-elongata_contig7062:6714..6804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7062 6715..6804 +
1691679699.931055-CDS-H-elongata_contig7062:6714..68041691679699.931055-CDS-H-elongata_contig7062:6714..6804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7062 6715..6804 +
1622931104.9537857-CDS-H-elongata_contig7062:6996..74041622931104.9537857-CDS-H-elongata_contig7062:6996..7404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7062 6997..7404 +
1691679699.9535952-CDS-H-elongata_contig7062:6996..74041691679699.9535952-CDS-H-elongata_contig7062:6996..7404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7062 6997..7404 +
1622931104.9668791-CDS-H-elongata_contig7062:7542..82441622931104.9668791-CDS-H-elongata_contig7062:7542..8244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7062 7543..8244 +
1691679699.9704254-CDS-H-elongata_contig7062:7542..82441691679699.9704254-CDS-H-elongata_contig7062:7542..8244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7062 7543..8244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7062.14722.1

>prot_H-elongata_contig7062.14722.1 ID=prot_H-elongata_contig7062.14722.1|Name=mRNA_H-elongata_contig7062.14722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=400bp
MSLPQVAQWKAAADKKIACLKKQGVYELVPLGYDMFMLDVQTTFPNADVE
EEVYVKMAPGYETSDKSGVPFVIKLKKSLYGLQQSPKNWFSTMDDHLSTI
GFRSPKSDSCVYMFEYKTGNAILTLYVDAILLLSKNKQLLGKLKKQLTGH
FDIKDLGDVSNVLGMNPADRRLDKQGKKIYQPITGALMYLAQASRYDILY
AINQLVRAISKPSKAHMGAAKHVLRYLTGATNFSIAYRRGGFKLVTYTDA
NWGGNPDNGRSTSSYIVILANGPISFKVGLQSLTAQSTIEVELVAAVTAM
KESLFCANMIMELGFTEGFQSVPVYIGNTSALHVSGNRTFSPRAKQIALR
YFFVQELVKEGQVTIHFVNTEHQLADLGRKYLKKHRHHFFIKLVNEFRA*
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mRNA from alignment at H-elongata_contig7062:6715..8244+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7062.14722.1 ID=mRNA_H-elongata_contig7062.14722.1|Name=mRNA_H-elongata_contig7062.14722.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1530bp|location=Sequence derived from alignment at H-elongata_contig7062:6715..8244+ (Himanthalia elongata Himel1 dioecious)
ATGAGCCTCCCTCAGGTGGCACAATGGAAGGCGGCGGCAGACAAGAAGAT CGCCTGCCTCAAGAAGCAAGGCGTCTACGAGCTGGTGCCTGTGTTGTCCG TCCCTGCTGAACAGAGAGTGGTTAGCTCACGCTGGGTCAACAAAATCAAG GCCGACAATCGCTTCAAAAGTCGACTGGTAATGCTGGGATGGGCGCAGAT ACCCAGGATCGACTGCGGCGGTAGCTTCGCACCCGTCTGTTGACTGCAAA GCATCCGCATGATGCTGGCCGTCGCGGCCGAGCTCGGCTACGACATGTTC ATGCTGGATGTGCAGACAACGTTCCCCAACGCTGACGTCGAGGAAGAGGT CTACGTCAAGATGGCTCCCGGCTATGAGACATCCGACAAGTCCGGAGTTC CGTTTGTGATAAAGCTCAAGAAGAGTCTCTACGGCCTCCAACAAAGCCCC AAGAACTGGTTCAGCACCATGGACGATCATCTTTCGACCATCGGTTTCCG CTCGCCCAAGTCGGATTCATGTGTTTACATGTTTGAATACAAGACTGGCA ATGCCATCCTGACACTCTATGTGGATGCCATTCTGCTGCTTAGCAAGAAC AAGCAGCTCCTTGGCAAGCTAAAGAAGCAGCTAACGGGTCATTTTGATAT AAAGGACCTCGGGGACGTGTCAAATGTACTCGGTATGAACGTTACCCGGG ACCGAGAAAATGGGACGATCACCATCGATCAGAAACGCTACAAGGAAGAC ATTCTCGAGCGCTACGGTATGATACACTGGAACGTTGCGTTTACGCTAAG CGTCGGACTGGAGATCTCCTTCGACCAGCCGGCAGACAGGCGGTTGGACA AACAAGGAAAGAAAATATACCAGCCCATCACCGGTGCGCTAATGTACCTC GCGCAGGCCTCGCGATACGACATCCTCTACGCAATCAATCAGCTAGTGAG GGCAATATCCAAGCCTTCGAAAGCTCATATGGGGGCGGCGAAACACGTAC TCCGGTACTTGACCGGGGCCACCAATTTCTCGATCGCCTACAGGCGAGGT GGCTTTAAACTAGTGACTTACACTGACGCAAACTGGGGAGGGAATCCTGA CAACGGTAGGTCTACCTCATCCTACATCGTGATACTCGCCAACGGGCCGA TCAGCTTCAAAGTGGGACTCCAGAGTCTGACGGCTCAATCGACCATCGAG GTGGAGCTCGTGGCAGCTGTCACAGCAATGAAGGAGTCACTCTTCTGCGC AAACATGATTATGGAGTTAGGTTTCACGGAGGGATTTCAAAGCGTTCCCG TCTACATCGGCAACACATCGGCATTGCACGTATCGGGAAACAGGACCTTT AGCCCAAGGGCAAAACAAATCGCCCTGAGATATTTTTTCGTTCAAGAGCT AGTAAAGGAAGGACAGGTCACCATCCACTTCGTCAATACGGAGCACCAAC TCGCCGATCTGGGAAGGAAATATCTCAAGAAGCATCGTCACCACTTCTTC ATTAAGCTCGTCAACGAGTTCAGGGCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig7062:6715..8244+

>mRNA_H-elongata_contig7062.14722.1 ID=mRNA_H-elongata_contig7062.14722.1|Name=mRNA_H-elongata_contig7062.14722.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2400bp|location=Sequence derived from alignment at H-elongata_contig7062:6715..8244+ (Himanthalia elongata Himel1 dioecious)
ATGAGCCTCCCTCAGGTGGCACAATGGAAGGCGGCGGCAGACAAGAAGAT
CGCCTGCCTCAAGAAGCAAGGCGTCTACGAGCTGGTGCCTATGAGCCTCC
CTCAGGTGGCACAATGGAAGGCGGCGGCAGACAAGAAGATCGCCTGCCTC
AAGAAGCAAGGCGTCTACGAGCTGGTGCCTCTCGGCTACGACATGTTCAT
GCTGGATGTGCAGACAACGTTCCCCAACGCTGACGTCGAGGAAGAGGTCT
ACGTCAAGATGGCTCCCGGCTATGAGACATCCGACAAGTCCGGAGTTCCG
TTTGTGATAAAGCTCAAGAAGAGTCTCTACGGCCTCCAACAAAGCCCCAA
GAACTGGTTCAGCACCATGGACGATCATCTTTCGACCATCGGTTTCCGCT
CGCCCAAGTCGGATTCATGTGTTTACATGTTTGAATACAAGACTGGCAAT
GCCATCCTGACACTCTATGTGGATGCCATTCTGCTGCTTAGCAAGAACAA
GCAGCTCCTTGGCAAGCTAAAGAAGCAGCTAACGGGTCATTTTGATATAA
AGGACCTCGGGGACGTGTCAAATGTACTCGGTATGAACCTCGGCTACGAC
ATGTTCATGCTGGATGTGCAGACAACGTTCCCCAACGCTGACGTCGAGGA
AGAGGTCTACGTCAAGATGGCTCCCGGCTATGAGACATCCGACAAGTCCG
GAGTTCCGTTTGTGATAAAGCTCAAGAAGAGTCTCTACGGCCTCCAACAA
AGCCCCAAGAACTGGTTCAGCACCATGGACGATCATCTTTCGACCATCGG
TTTCCGCTCGCCCAAGTCGGATTCATGTGTTTACATGTTTGAATACAAGA
CTGGCAATGCCATCCTGACACTCTATGTGGATGCCATTCTGCTGCTTAGC
AAGAACAAGCAGCTCCTTGGCAAGCTAAAGAAGCAGCTAACGGGTCATTT
TGATATAAAGGACCTCGGGGACGTGTCAAATGTACTCGGTATGAACCCGG
CAGACAGGCGGTTGGACAAACAAGGAAAGAAAATATACCAGCCCATCACC
GGTGCGCTAATGTACCTCGCGCAGGCCTCGCGATACGACATCCTCTACGC
AATCAATCAGCTAGTGAGGGCAATATCCAAGCCTTCGAAAGCTCATATGG
GGGCGGCGAAACACGTACTCCGGTACTTGACCGGGGCCACCAATTTCTCG
ATCGCCTACAGGCGAGGTGGCTTTAAACTAGTGACTTACACTGACGCAAA
CTGGGGAGGGAATCCTGACAACGGTAGGTCTACCTCATCCTACATCGTGA
TACTCGCCAACGGGCCGATCAGCTTCAAAGTGGGACTCCAGAGTCTGACG
GCTCAATCGACCATCGAGGTGGAGCTCGTGGCAGCTGTCACAGCAATGAA
GGAGTCACTCTTCTGCGCAAACATGATTATGGAGTTAGGTTTCACGGAGG
GATTTCAAAGCGTTCCCGTCTACATCGGCAACACATCGGCATTGCACGTA
TCGGGAAACAGGACCTTTAGCCCAAGGGCAAAACAAATCGCCCTGAGATA
TTTTTTCGTTCAAGAGCTAGTAAAGGAAGGACAGGTCACCATCCACTTCG
TCAATACGGAGCACCAACTCGCCGATCTGGGAAGGAAATATCTCAAGAAG
CATCGTCACCACTTCTTCATTAAGCTCGTCAACGAGTTCAGGGCTTGACC
GGCAGACAGGCGGTTGGACAAACAAGGAAAGAAAATATACCAGCCCATCA
CCGGTGCGCTAATGTACCTCGCGCAGGCCTCGCGATACGACATCCTCTAC
GCAATCAATCAGCTAGTGAGGGCAATATCCAAGCCTTCGAAAGCTCATAT
GGGGGCGGCGAAACACGTACTCCGGTACTTGACCGGGGCCACCAATTTCT
CGATCGCCTACAGGCGAGGTGGCTTTAAACTAGTGACTTACACTGACGCA
AACTGGGGAGGGAATCCTGACAACGGTAGGTCTACCTCATCCTACATCGT
GATACTCGCCAACGGGCCGATCAGCTTCAAAGTGGGACTCCAGAGTCTGA
CGGCTCAATCGACCATCGAGGTGGAGCTCGTGGCAGCTGTCACAGCAATG
AAGGAGTCACTCTTCTGCGCAAACATGATTATGGAGTTAGGTTTCACGGA
GGGATTTCAAAGCGTTCCCGTCTACATCGGCAACACATCGGCATTGCACG
TATCGGGAAACAGGACCTTTAGCCCAAGGGCAAAACAAATCGCCCTGAGA
TATTTTTTCGTTCAAGAGCTAGTAAAGGAAGGACAGGTCACCATCCACTT
CGTCAATACGGAGCACCAACTCGCCGATCTGGGAAGGAAATATCTCAAGA
AGCATCGTCACCACTTCTTCATTAAGCTCGTCAACGAGTTCAGGGCTTGA
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