mRNA_H-elongata_contig7058.14714.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7058.14714.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI) HSP 1 Score: 180 bits (457), Expect = 2.360e-45 Identity = 132/337 (39.17%), Postives = 179/337 (53.12%), Query Frame = 1
Query: 1234 EAIPYTLTARSEGKILWTVDAI--SPEVGEASESYIITLTDYAESDCSLDRY-GLCPSDTFSTTGAPPCEKCQENTYSSSGATYCTVDALDSLELPIFINNAILEDAPYGFAGYGYIDVDEDQVIVM---NGGELETSGTVILFDDTRDLPESIALYYYVYSDLDESSTDFERGQGDVDPTTGIYSATIS-VPDGKSRVILSFVVLEEADILTGSTSINQETVFALEVLNDDCEESYLTFTLEWDAETS-LDLSVFEASGREVIAGDHGV-VGYTDVDDSDGFGPEIYRLYNGLSVDQHDVLGEYMAMIWWNQG--VSTTWTLTARVAGEVAWIETG 2211
+ IP ++T +DA+ EVG+A TL AE + GLC S++FS+TGAPPC C + S +GAT C L L LP I A+ DA GFAG G + I + +GG + SGT + DD LP S +++ +Y++ DF RGQ +DP+TG +S ++ +P G SR++LSFVV++ A+ L + +T FAL+V N C S LT TLEW E S +DL V E G V + G VG+ D DD+ GFGPE Y + + L VLGEY + G + TW LTARV+GEV WIE G
Sbjct: 91 DTIPASITELCGDNADCIIDALLAGEEVGQA------TLEGQAEDRAYQEEVAGLCASNSFSSTGAPPCTTCPDGEVSGTGATACIRQELVGLSLPENIAAAMAADAMGGFAGPGSLTTTPAGTIQLTEEDGGSVSLSGTFVR-DDGAALPSSTSVF--IYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEALD---TAGADTAFALDVSNSACVPS-LTITLEWTGEISDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEG 414
BLAST of mRNA_H-elongata_contig7058.14714.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI) HSP 1 Score: 174 bits (442), Expect = 2.380e-42 Identity = 129/336 (38.39%), Postives = 175/336 (52.08%), Query Frame = 1
Query: 1234 EAIPYTLTARSEGKILWTVDAI--SPEVGEASESYIITLTDYAESDCSLDRYGLCPSDTFSTTGAPPCEKCQENTYSSSGATYCTVDALDSLELPIFINNAILEDAPYGFAGYGYIDVDEDQVIVM---NGGELETSGTVILFDDTRDLPESIALYYYVYSDLDESSTDFERGQGDVDPTTGIYSATIS-VPDGKSRVILSFVVLEEADILTGSTSINQETVFALEVLNDDCEESYLTFTLEWDAETS-LDLSVFEASGREVIAGDHGV-VGYTDVDDSDGFGPEIYRLYNGLSVDQHDVLGEYMAMIWWNQG--VSTTWTLTARVAGEVAWIETG 2211
+ IP ++T +DA+ EVG+A TL AE + + FS+TGAPPC C + S +GAT C L L LP I A+ DA GFAG G + I + +GG + SGT + DD LP S +++ +Y++ DF RGQ +DP+TG +S ++ +P G SR++LSFVV++ A+ L + +T FAL+V N C S LT TLEW ETS +DL V E G V + G VG+ D DD+ GFGPE Y + + L VLGEY + G + TW LTARV+GEV WIE G
Sbjct: 218 DTIPASITELCGDNADCIIDALLAGEEVGQA------TLEGQAEDRAYQEEVVCARAILFSSTGAPPCTTCPDGEVSGTGATACIRQELVGLSLPENIAAAMAADAMGGFAGPGSLTTTPAGTIQLTEEDGGSVSLSGTFVR-DDGAALPSSTSVF--IYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEALD---TAGADTAFALDVSNSACVPS-LTITLEWTGETSDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEG 540
BLAST of mRNA_H-elongata_contig7058.14714.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI) HSP 1 Score: 170 bits (430), Expect = 7.970e-41 Identity = 115/323 (35.60%), Postives = 166/323 (51.39%), Query Frame = 1
Query: 70 GCSPSGCVPSNVLDNSFADASRWSCNAEVSGVDA-CELTLEFEDPQDIVQMNMALYNGDERTRSVNVWVDGVYTHTVTSSGTTTDSESYDLIAPGATSVVLRAADVEGNGWLSITEVTFMINDSL------MIVTG----VSASANGWDTRVNDS-GCPPIGCVADNVLDDSIADVSRWSCNAEDSDVDACELTFEFDEPQDIVQMYMALYKGDERTRSVNILADGVLHDTIVSSGTTRGYEVFELISPGATTVVLQASTTEDNEWLSIT--------GVRFVTGEIIEVTPIPVLTTATATXXXXGTTSTSSEC-PSDSTPN 975
GC P+GCV +N D +D SRWSC + D+ C +T ED Q + + +ALY GD RTR++++ VDG Y + TSSGTT+D ES DL G VV D++ WLSI EV +++D ++ G V+A+A+ +D R+ D+ GC P GC A D +++ SRWSC E + C ++++ I ++ +A+Y+GD R R+V + DG L T SSGTT G+E ++ V + + D+EWLSI GV TP P L T +TS C PS+ PN
Sbjct: 50 GCPPAGCVGANTRDGITSDESRWSCAPSLDSSDSGCTITYTLEDEQHLEALKIALYQGDTRTRTIDISVDGNYAFSWTSSGTTSDFESIDLGVDGK--VVELVGDLQDWEWLSILEVEILVDDGDDGSEVDVVEAGELGTVTATADLYDDRLGDTVGCDPEGCTAALTRDGDMSEDSRWSCAPELGGL--CSISYDLGAEYSIDELQLAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVETEIMVYNGVAPPPSPTTPATPSPTLPPTTDLNVCFDSTSDDYRCLPSEDDPN 368
BLAST of mRNA_H-elongata_contig7058.14714.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE) HSP 1 Score: 160 bits (404), Expect = 1.880e-37 Identity = 104/290 (35.86%), Postives = 158/290 (54.48%), Query Frame = 1
Query: 25 VSASANGWDTRVDGD-GCSPSGCVPSNVLDNSFADASRWSC--NAEVSGVDACELTLEFEDPQDIVQMNMALYNGDERTRSVNVWVDGVYTHTVTSSGTTTDSESYDLIAPGATSVVLRAADVEGNGWLSITEVTF-----MINDSLMIVTGV---------SASANGWDTRVNDS-GCPPIGCVADNVLDDSIADVSRWSCNAEDSDVDACELTFEFDEPQDIVQMYMALYKGDERTRSVNILADGVLHDTIVSSGTTRGYEVFELISPGATTVVLQASTTEDNEWLSI 840
V+ A+ +DTR GC P GCV +N D +D SRWSC + + SG C +T E + + + +ALY GD RTR+++++VDG + T TSSGTTT ES L+ G VV D+ + WLSI EV +++D ++V V +A+A+ +DTR+ D+ GC P GC A D +++ SRWSC + C ++++ ++ Q+ + +Y+GD RTR+V++ DG L T SSGTT +E +L V + S D++WLSI
Sbjct: 33 VTPEASVFDTRSTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASG-SGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQ--VVELVGDLNDDEWLSILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSRWSCAPKLGG--PCSISYDLGAEYNVEQLRLRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSI 317
BLAST of mRNA_H-elongata_contig7058.14714.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 147 bits (370), Expect = 5.370e-32 Identity = 104/296 (35.14%), Postives = 153/296 (51.69%), Query Frame = 1
Query: 25 VSASANGWDTRV---DGDGCSPSGCVPSNVLDNSFADA-SRWSCNAEVSGVDA-CELTLEFEDPQDIVQMNMALYNGDERTRSVNVWVDGVYTHTVTSSGTTTDSESYDLIAPGATSVVLRAADVEGNGWLSITEVTFMIND-----------------SLMIVTGVSASANGWDTRVNDS-GCPPIGCVADNVLDDSIADVSRWSCNAEDSDVDACELTFEFDEPQDIVQMYMALYKGDERTRSVNILADGVLHDTIVSSGTTRGYEVFELISPGATTVVLQASTTEDNEWLSIT 843
V+ +A +DT V DG GCSP+GC+ N D SRWSC + + C +T + +N+A+Y GDERTR++ + +D + TSSGTTTD E+ ++ G ++ +E + WLSI EV +++D SL IVT SA +D R+ DS GC P GC A+ D ++D SRWSC S C ++++ D+ ++ +ALYKG R R+V++ DG L T SSGTT G+E +L V + +D+EW+SIT
Sbjct: 34 VTVAAPLYDTTVTASDG-GCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGLGIQYQLTGLNIAMYKGDERTRTLEINIDNLPYTVWTSSGTTTDFETIEVDTMGRWIDIVGV--LEDSEWLSIMEVEILVDDGVTDTDDVAGTTEVEAGSLGIVTATSAL---FDPRLGDSNGCDPAGCTAELTRDGDVSDGSRWSCAP--SLGGTCSISYDLGAVYDLSELRLALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTV-TGVLDDSEWVSIT 320
BLAST of mRNA_H-elongata_contig7058.14714.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 138 bits (348), Expect = 1.750e-29 Identity = 104/295 (35.25%), Postives = 149/295 (50.51%), Query Frame = 1
Query: 25 VSASANGWDTRVDGD-GCSPSGCVPSNVLDNSFADA-SRWSCNAEVSGVDA-CELTLEFEDPQDIVQMNMALYNGDERTRSVNVWVDGVYTHTVTSSGTTTDSESYDLIAPGA-TSVVLRAADVEGNGWLSITEVTFMIND---------SLMIVTGVSASANG--------WDTRVN-DSGCPPIGCVADNVLDDSIADVSRWSCNAEDSDVDACELTFEFDEPQDIVQMYMALYKGDERTRSVNILADGVLHDTIVSSGTTRGYEVFELISPGATTVVLQAS-TTEDNEWLSI 840
V+A A +D R+ + GC PSGCV D SRW+C + + C +T + +N+A+Y GDERTR++ + +D + T TSSGTTT E+ +L G S+V AD E WLSI EV MI+D + +GV AS G +D R+ D GC P GCV DN D ++ SRWSC C ++++ D+ ++ +A++KG ER S+ + D L T SSGTT G+E +L G VL+ + +D+EWLSI
Sbjct: 16 VTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDTMGRWISIVGVLADSE---WLSIMEVKIMIDDGETGSDDDNTTTNASGVEASTLGSVTAGASFYDPRLAVDGGCDPSGCVVDNTRDGDLSTASRWSCAPTLGG--ECTISYDLGTAYDLDELRLAMFKGTERQVSMKVRVDDALVTTWTSSGTTDGFEAIDL--SGTWGQVLEITGVLDDSEWLSI 303
BLAST of mRNA_H-elongata_contig7058.14714.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 134 bits (338), Expect = 3.480e-28 Identity = 97/293 (33.11%), Postives = 146/293 (49.83%), Query Frame = 1
Query: 25 VSASANGWDTRVDGD-GCSPSGCVPSNVLDNSFADA-SRWSCNAEVSGVDA-CELTLEFEDPQDIVQMNMALYNGDERTRSVNVWVDGVYTHTVTSSGTTTDSESYDLIAPGATSVVLRAADVEGNGWLSITEVTFMIND-----------------SLMIVTGVSASANGWDTRVNDS-GCPPIGCVADNVLDDSIADVSRWSCNAEDSDVDACELTFEFDEPQDIVQMYMALYKGDERTRSVNILADGVLHDTIVSSGTTRGYEVFELISPGATTVVLQASTTEDNEWLSI 840
V+A A+ +D R+ D GC PSGCV D SRWSC + + C +T + +N+A++ GDERTR++ + +D + TSSGTT E+ ++ G ++ +E + WLSI EV +++D SL IVT SA +D R+ DS GC P GC A+ D ++D SRWSC S C ++++ D+ ++ +ALY G R R+V++ DG L T SSGTT G+E +L + + ++ EWLSI
Sbjct: 33 VTAVADLYDPRLSADNGCDPSGCVAELTRDGDATSLESRWSCQPALGDAGSVCRITYGLGIQYQLTGLNIAMFKGDERTRTLEINIDNLPYTVWTSSGTTAGFETIEVDTTGRWIEIVGV--LEDSEWLSIMEVEILVDDGVTDTDDVVDTTEVEAGSLGIVTATSAL---FDPRLGDSNGCDPAGCTAELTRDGDVSDESRWSCAP--SLGGTCSISYDLGAVYDLSKLRLALYNGATRVRTVDVSVDGSLATTWTSSGTTDGFENIDLSGYSGQDITV-TGVLDNLEWLSI 317
BLAST of mRNA_H-elongata_contig7058.14714.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 127 bits (318), Expect = 8.160e-26 Identity = 95/307 (30.94%), Postives = 143/307 (46.58%), Query Frame = 1
Query: 25 VSASANGWDTRVDGD-GCSPSGCVPSNVLDNSFADA-SRWSCNAEVSGVDA-CELTLEFEDPQDIVQMNMALYNGDERTRSVNVWVDGVYTHTVTSSGTTTDSESYDLIAPGATSVVLRAADVEGNGWLSITEVTFMINDS---------------------------LMIVTGVSASANGWDTRVN-DSGCPPIGCVADNVLDDSIADVSRWSCNAEDSDVDACELTFEFDEPQDIVQMYMALYKGDERTRSVNILADGVLHDTIVSSGTTRGYEVFELISPGATTVVLQASTTEDNEWLSITGVR 852
V+A A+ +D + + GC PSGCV D SRWSC + + C +T + +N+A+Y GDERTR++++ +D + T TSSGTTT E+ +L V+ +E + WLSI EV MI D + + V+ A+ +D + D GC P GCVADN D ++ SRWSC C ++++ ++ ++ +A+YKG ER ++ + D L T SSGTT E +L TV + +D+EWLSI V
Sbjct: 34 VTAVADLYDPSLSAENGCDPSGCVAELTRDGDVTSLESRWSCQPALGDAGSECRITYGLGIQYQLSAVNIAMYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIELDTMAQWISVVGV--LEDSEWLSIMEVEIMIEDGESGSDDGDTTATDAGDDDTTTSTSAVEVGSLGAVTVEASFYDPSLTVDGGCDPSGCVADNTRDGDLSTASRWSCAPTLGG--ECTISYDLGTVYELDELRLAMYKGTERQVTMEVRVDDTLVTTWTSSGTTDDLEAIDLSGTSGQTVEI-TGVLDDSEWLSIVEVE 335
BLAST of mRNA_H-elongata_contig7058.14714.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI) HSP 1 Score: 104 bits (259), Expect = 3.060e-22 Identity = 55/136 (40.44%), Postives = 83/136 (61.03%), Query Frame = 1
Query: 451 TGVSASANGWDTRVND-SGCPPIGCVADNVLDDSIADVSRWSCNAEDSDVDACELTFEFDEPQDIVQMYMALYKGDERTRSVNILADGVLHDTIVSSGTTRGYEVFELISPGATTVVLQASTTEDNEWLSITGVRF 855
T V+ AN +D R ++ GC P GC A D S D SRWSC+ + D C++T++F+EPQDIV++ + YKGDER R++ + TI SSGT+ YE +++ + + ++A +D+EW+SIT VRF
Sbjct: 11 TTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQ-CKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRF 145
BLAST of mRNA_H-elongata_contig7058.14714.1 vs. uniprot
Match: A0A6H5JLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL4_9PHAE) HSP 1 Score: 115 bits (287), Expect = 3.690e-22 Identity = 96/300 (32.00%), Postives = 141/300 (47.00%), Query Frame = 1
Query: 1384 GLCPSDTFSTTGAPPCEKCQENTYSSSGATYCTVDALDSLELPI-FINNAILEDAPYGFAG------------YGYIDVD-----EDQVIVMNGGELETSGTVILFDDTRDLPESIALYYYVYSDLDESSTDFERGQGDVDPTTGIYSATI-SVPDGKSRVILSFVVLEEADILTGSTSINQET-VFALEVLNDDCEESYLTFTLEWDAETSLDLSVFEASGREVIAGDHGVVGYTDV--DDSDGFGPEI--YRLYNGLSVDQHDVLGEYMAMIWWN---QGVSTTWTLTARVAGEVAWI 2202
GLC ++TFS+TG PPC C S GA C + ++ LP I A+L DA GFAG +G +VD E ++ N G + SG + D + LP S A+++Y+ + + D RG + T+G +S + VP G SR+ LSFV+ + A+ L + + T +F+L++ N C S LT T EW + E + +G G V D+ G P Y LY+GL VD VLGEY + TW +TARV+GE+ ++
Sbjct: 760 GLCTTNTFSSTGTPPCTDCPAGEVSGRGAKVCVPQGVPAVALPSEAIVAAMLADATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVRHD-SAPLPFSSAVFFYIENA--DQPDDIARGSSKIRGTSGDFSMVVMDVPPGNSRLFLSFVIKDPAEALNVAAEVVPATSIFSLQISNMACVPS-LTITHEWIGGNFAPYEITEPDLTTIHSGHGNYSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRKFLPILPSETPPTWRITARVSGEIVYM 1055 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7058.14714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7058.14714.1 >prot_H-elongata_contig7058.14714.1 ID=prot_H-elongata_contig7058.14714.1|Name=mRNA_H-elongata_contig7058.14714.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=691bp MNMALYNGDERTRSVNVWVDGVYTHTVTSSGTTTDSESYDLIAPGATSVVback to top mRNA from alignment at H-elongata_contig7058:3357..9558- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7058.14714.1 ID=mRNA_H-elongata_contig7058.14714.1|Name=mRNA_H-elongata_contig7058.14714.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6202bp|location=Sequence derived from alignment at H-elongata_contig7058:3357..9558- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7058:3357..9558- >mRNA_H-elongata_contig7058.14714.1 ID=mRNA_H-elongata_contig7058.14714.1|Name=mRNA_H-elongata_contig7058.14714.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4146bp|location=Sequence derived from alignment at H-elongata_contig7058:3357..9558- (Himanthalia elongata Himel1 dioecious)back to top |