mRNA_H-elongata_contig7057.14713.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7057.14713.1
Unique NamemRNA_H-elongata_contig7057.14713.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: D7G6W1_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 4.260e-75
Identity = 161/306 (52.61%), Postives = 193/306 (63.07%), Query Frame = 1
Query:    1 QAPGSAGNGIDAALKFQDLHGRLRLLNCVKKRGPMLHTLYALMGTGTLE------RRQGVG---MAQMLSRAFSEPVAALTGSNHVAR---PRTALALSTNEA-HGGRESNGISREQWRADMTKRSGGPA---RVPVG-------SEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDP-LGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSAAAKLK 846
            + P S+ +G++AAL+F DLH RL+LL  +K R PMLH L+AL  TGT           GV    + QM  R FSEP A L+G  HV     P TA A    +  HGG  SNG          T+  GG A   R  V        +EVTER LL+GILYAFQGIDSQYIKYC EES Y +DPRLRLG  QR +V+ MLEMGWLF TV+ Y +++ +    +G  R QQAFVFSLKED+TEYYRLIAVLGAQLNL++     G+         TEGLTL+RL VWV DPM+RL  MATLV+AAA+LK
Sbjct:   96 KTPSSSSSGVEAALRFDDLHRRLKLLAGLKNRAPMLHLLHALTDTGTAAXXXXXXNHHGVAPPAIPQMPPRVFSEPAAGLSGIGHVVGQGLPATATASVGGDGYHGGGVSNGREPVGEGRRHTEAMGGRAGRHRSVVSRGMPRRTTEVTERTLLKGILYAFQGIDSQYIKYCEEESGYVLDPRLRLGLKQRAMVTEMLEMGWLFTTVVRYNQSVDAGSAGVGPGRIQQAFVFSLKEDLTEYYRLIAVLGAQLNLESEGVGVGAGG-------TEGLTLQRLFVWVKDPMKRLNVMATLVAAAAQLK 394          
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A835YR49_9STRA (Spindle pole body component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR49_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.200e-28
Identity = 73/170 (42.94%), Postives = 106/170 (62.35%), Query Frame = 1
Query:  340 GGPARVPVGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCEN-IGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSAAAKLK 846
            G  A+  V S+ TERALLR +LYA QGID Q+++Y      +A+DP L +  + R++V R+ EMGWLF  V  Y E  + + + +G  R   AF  SL++++T+Y+RL+AV+ AQL    A+  +G           E LTL+RLA+W VDPMERL+ MATL+ +   L+
Sbjct:  212 GTSAQHGVLSDATERALLRDVLYALQGIDGQHVRYDPGSQAFAVDPSLSVSPATRDLVLRLCEMGWLFMHVTQYVEQTLAAGEAVGHVRL--AFAQSLQDELTDYFRLLAVMEAQLG--GAEGDQGG----------ECLTLRRLALWSVDPMERLRLMATLIESVGTLQ 367          
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: C1EDY5_MICCC (Gamma-tubulin complex component (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EDY5_MICCC)

HSP 1 Score: 121 bits (303), Expect = 3.380e-27
Identity = 90/283 (31.80%), Postives = 141/283 (49.82%), Query Frame = 1
Query:   34 AALKFQDLHGRLRLLNCVKKRGPMLHTLYALMGTGTLERRQ------GVGMAQMLSRAFSEPV---AALTGSNHVARPRTALALSTNEAHGGRESNGISREQWRADMTKRSGGPARVPVGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLG----SSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEG--LTLKRLAVWVVDPMERLKQMATLVSAAA 837
            AA+KF +LH RL     +K R   LH L  +      E R       G+G     +R  ++P+   AA  G   +A P  A +L+  +      + G+     RA   +     A   +  E+ E+ L+R +L+A QGID ++I+Y  + + Y +DP   +    R++  ++ E+GWLF+ V      +G  D  G        +QAF  +++ ++ +YYRLIAVL AQ  +  A A E      G  T   G  LTL+RL+VW+ +P+ RL+ +A LV AAA
Sbjct:   38 AAVKFAELHRRLAQQPGLKARWATLHALLRVSEDRRAEDRAVVPAGGGIGAGAATARHIADPLSAAAAAGGLPALADPDPARSLAAGDG----STLGLDHPGSRALAYRELAAEAETNL--EIGEQELVRDVLFACQGIDGRHIRYNPQMASYVVDPAAPVRPGARDLARKLTELGWLFRRVRAA---LGGVDEAGLGGDGGSVRQAFRAAVQAELADYYRLIAVLEAQAQVPMASALEAPTTGTGGGTAGGGTYLTLRRLSVWLAEPLRRLRLLAVLVDAAA 311          
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A433QZS3_9FUNG (Spindle pole body component n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QZS3_9FUNG)

HSP 1 Score: 120 bits (300), Expect = 8.760e-27
Identity = 65/158 (41.14%), Postives = 97/158 (61.39%), Query Frame = 1
Query:  370 EVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSAAAKL 843
            EV+E ALLR  ++ FQGID +Y+K+  +   Y ID ++ + RS R+++ R+ E+GWL+K V M+         +G     Q+F  +L+ ++T+YYRLIAVL AQ+  D A        +RG +  T+GL+LKRL VW  D M+RL+ M+ LV   A L
Sbjct:  261 EVSETALLRDAIFMFQGIDGRYVKFAEDAGSYVIDNKVAIPRSTRDLIHRLSELGWLYKRVHMFVRVRADDTSIGL--VGQSFCSALQRELTDYYRLIAVLEAQIAKDDAS-------NRGGSVTTKGLSLKRLLVWTQDSMQRLRLMSVLVDVCAVL 409          
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A6L2PLU2_COPFO (Uncharacterized protein n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PLU2_COPFO)

HSP 1 Score: 117 bits (294), Expect = 5.920e-26
Identity = 87/285 (30.53%), Postives = 145/285 (50.88%), Query Frame = 1
Query:   46 FQDLHGRLRLLNCVKKRGPMLHTLYAL--MGTGTLERRQGVGMAQMLS-----------RAFSEP-VAALTGSNHVARPRTAL-ALSTNEAHGGRESNGISREQWRADMTKRSGGPARVP--------VGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSA 831
            F DLH +L+    +K R  +L  L  +  M   +      V MA++++             F  P +++ + ++  A P   +  +S++ A   ++ +G+  +  R   T        +P        V SEV+E  LL+ ++Y+FQG++ +Y+K       Y +DP++R  RS R +V R+ E+GWL   V  +CEN  +   LG     Q+ + +L+E++TEYYRL+AVL +Q+          SFE R     T+GLTL RL+VW  +P  R+K +A +V A
Sbjct:   79 FSDLHRKLQAWTFLKNRQAILSFLMHVSDMPQTSHTASSSVLMAELITAESDASKAVQPNCFGLPHLSSSSLTSREAAPNVPIHVVSSSGADWHQDKHGMEHDSRRCQSTLSQSSGFHMPPDANLNKSVSSEVSESELLQELIYSFQGVNGKYLKLSPVSRGYKLDPKVRAKRSIRRLVLRLAELGWLHNQVRQHCENAAALKSLGL--IGQSLIAALREELTEYYRLVAVLQSQV----------SFEERPPCH-TDGLTLCRLSVWTFEPQRRMKCLAAVVEA 350          
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A507EGI6_9FUNG (Spindle pole body component n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EGI6_9FUNG)

HSP 1 Score: 115 bits (288), Expect = 3.330e-25
Identity = 83/274 (30.29%), Postives = 135/274 (49.27%), Query Frame = 1
Query:   28 IDAALKFQDLHGRLRLLNCVKKRGPMLHTLYALMGTGTLERRQGVGMAQMLSRAFSEPVAALTGSNHVARPRTA----LALSTNEAHGGRESNGISREQWRADMTKRSGGPARVPVGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSAAA 837
            +D A++F +LH +L   + +  +   ++ L AL  +   +R QG    + +     + +  +  ++  +  RTA    +  +T   H       I      A  TK       VP  S + E   LR ++Y FQGID +Y+KY     +YAIDP +++ + +REI+ +++EMGWL++ VM + +   +    G  R  Q+F  +L  +M++YYRLIA+L            +G     G  T    LTLKRL VW  DP++RL+ M  LV   A
Sbjct:  118 LDKAIRFSNLHQKLTGKSSLTNQWASVYFLLAL--SQQTDRLQGRESRESVLSLGLQRLPTMKTTSKRSDLRTASPSVVPDTTRNGH-------IHASTSAATHTK-----GLVPEPSGIAESEWLRDVVYVFQGIDGKYMKYDAPNEKYAIDPEVQVTKPEREILLKLVEMGWLYRQVMEFVDKHKNDTSEGLIR--QSFCSALAREMSDYYRLIAIL------------QGQISPSGENTTASPLTLKRLYVWTQDPLKRLRIMGVLVELCA 363          
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A8H7UHR0_9FUNG (Spindle pole body component n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UHR0_9FUNG)

HSP 1 Score: 113 bits (282), Expect = 1.980e-24
Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  370 EVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMY-CENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSA 831
            +V E A+LR I++ FQGID  YIK+  E   Y ID  + + RS RE++ ++ E+GWL+K +  +   NI   D        Q+F  SL+ +M +YY+LIAVL AQ++    K      +    T  T  LTLKRL VW+ D ++RL+ M+ L+ A
Sbjct:  144 QVPEAAILRDIMFIFQGIDGTYIKFDAESDAYVIDDMVGISRSARELIHKLTELGWLYKRIQAFIATNI---DNASIGLVGQSFCSSLQREMNDYYKLIAVLEAQISKSEGKDPTFLADDLDTTLSTNSLTLKRLVVWMRDSLQRLRLMSVLIDA 295          
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A2H9ZUR9_9ASPA (Gamma-tubulin complex component n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZUR9_9ASPA)

HSP 1 Score: 113 bits (282), Expect = 2.040e-24
Identity = 90/278 (32.37%), Postives = 134/278 (48.20%), Query Frame = 1
Query:   34 AALKFQDLHGRLRLLNCVKKRGPMLH--TLYALMGTGTLERRQGV-----GMAQMLSRAFSEPVAALTGSNHVARPRTALALSTNEAHGGRESNGISREQWRADMTKRSGGPARVPVGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSAAAKLK 846
            AAL F DLH +L        R P+L+   L  L+ T +L+RR+       G+  +  +  S P  A T S  V      +     +    RE   I+  ++ AD+         V   +EVTE AL+R +LYA QGID +Y+++      Y +   L++ R  R IV R+ E+GWLF+ V  Y   I            QAF  +L+E++++YY+L+AVL +Q +     A   S    G       L+L RLAVW  +PM R++ MA LV     L+
Sbjct:   75 AALAFADLHSKL------SARAPLLNRWALLYLLNTLSLDRRRSASSPPGGLPFLPLQPASHPPRASTASGAVGAGGGGVVRVAKDPENIRE---IALREF-ADL---------VIADTEVTESALVRDVLYACQGIDGRYVRFDRSSDGYDLPESLKVPRHTRTIVRRLCELGWLFRKVRDYISEITVDRQFEIGTVGQAFCSALQEELSDYYKLLAVLESQSSNPIPSAGSDSGGGTG-----NYLSLMRLAVWFTEPMVRMRLMAVLVDCCRVLR 328          
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: A0A2J7QIP4_9NEOP (Gamma-tubulin complex component (Fragment) n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QIP4_9NEOP)

HSP 1 Score: 111 bits (278), Expect = 2.050e-24
Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = 1
Query:  361 VGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSA 831
            V SEV E  LL+ ++Y+FQGI+ +++K       Y +DP++R+ RS R  V R+ E+GWL   V  +CEN  +   LG     Q+ + +L+ ++TEYYRL+A+L +Q+      + +           TEGLTL RLAVW  +P   +K +A +  A
Sbjct:  209 VSSEVPESQLLQELIYSFQGINGKFLKLSPVSQGYILDPKVRVKRSVRRFVLRLAELGWLHNQVRQHCENAAASRTLGL--IGQSLIAALRAELTEYYRLVAILQSQIKQQIDTSVDSPLCEEQPLWHTEGLTLCRLAVWTFEPQRHMKCLAAVAEA 363          
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Match: V3ZZ97_LOTGI (Gamma-tubulin complex component n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZZ97_LOTGI)

HSP 1 Score: 112 bits (281), Expect = 2.770e-24
Identity = 86/282 (30.50%), Postives = 136/282 (48.23%), Query Frame = 1
Query:   19 GNGIDAALKFQDLHGRLRLLNCVKKRGPMLHTLYALMGTGTLERRQGVGMAQML------SRAFSEPVAALT-GSNHVARPRTAL----ALSTNEAHGGRESNGISREQWRADMTKRSGGPARVPVGSEVTERALLRGILYAFQGIDSQYIKYCVEESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSSRTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTEGLTLKRLAVWVVDPMERLKQMATLVSA 831
            G   DAA+ F +LH +L+    +  R  +L+ L +L  T    ++    +   L      + A S P    T G   +    +AL    +   +  H G+ ++     Q       +S    R P   EV E  LL+ ++YAFQGI+ ++IK+   +  Y ID +  + ++ R++VS++ E GWL+     Y  +  +    G     Q+F  +L +++TEYYR I V+ AQL  +     +  FE    T    GLTL+RLAVW  DP+ RLK +A LV A
Sbjct:   55 GREKDAAI-FSELHRKLKAQGVLHNRWGVLYLLMSLSDTAPSSKQTSSFINSSLFSKGLPAYATSTPFHGGTRGGRDMTLTHSALYSTGSSGISSIHSGQHTDTTPVPQSFMPSNLKSALVPRTPESDEVNESELLKDLMYAFQGIEGRWIKFNTVKDGYRIDSQAGIPKAVRQLVSKLAECGWLYNKTKTYVTSWSTDKAFGL--VGQSFCAALHQELTEYYRFITVMEAQLQHEQ----DAGFEDSSNT----GLTLRRLAVWTFDPLVRLKVLAALVDA 325          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7057.14713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W1_ECTSI4.260e-7552.61Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
A0A835YR49_9STRA3.200e-2842.94Spindle pole body component n=1 Tax=Tribonema minu... [more]
C1EDY5_MICCC3.380e-2731.80Gamma-tubulin complex component (Fragment) n=1 Tax... [more]
A0A433QZS3_9FUNG8.760e-2741.14Spindle pole body component n=2 Tax=Jimgerdemannia... [more]
A0A6L2PLU2_COPFO5.920e-2630.53Uncharacterized protein n=1 Tax=Coptotermes formos... [more]
A0A507EGI6_9FUNG3.330e-2530.29Spindle pole body component n=1 Tax=Powellomyces h... [more]
A0A8H7UHR0_9FUNG1.980e-2439.35Spindle pole body component n=1 Tax=Umbelopsis vin... [more]
A0A2H9ZUR9_9ASPA2.040e-2432.37Gamma-tubulin complex component n=1 Tax=Apostasia ... [more]
A0A2J7QIP4_9NEOP2.050e-2436.94Gamma-tubulin complex component (Fragment) n=2 Tax... [more]
V3ZZ97_LOTGI2.770e-2430.50Gamma-tubulin complex component n=1 Tax=Lottia gig... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7057contigH-elongata_contig7057:5226..6595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.0
Seed ortholog evalue4.2e-65
Seed eggNOG ortholog2880.D7G6W1
Preferred nameTUBGCP3
KEGG koko:K16570
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000922,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005824,GO:0005825,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007140,GO:0007163,GO:0007276,GO:0007338,GO:0008017,GO:0008092,GO:0008150,GO:0008275,GO:0008360,GO:0009566,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030863,GO:0030981,GO:0031023,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032501,GO:0032504,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0044703,GO:0044732,GO:0046785,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051298,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0061496,GO:0061497,GO:0065003,GO:0065007,GO:0065008,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0071957,GO:0071963,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903046,GO:1903047
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsKOG2000@1,KOG2000@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size858
Cds size858
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7057.14713.1prot_H-elongata_contig7057.14713.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7057 5226..6595 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931103.68051-CDS-H-elongata_contig7057:5225..55091622931103.68051-CDS-H-elongata_contig7057:5225..5509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7057 5226..5509 -
1691679699.4105895-CDS-H-elongata_contig7057:5225..55091691679699.4105895-CDS-H-elongata_contig7057:5225..5509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7057 5226..5509 -
1622931103.6989017-CDS-H-elongata_contig7057:5716..58731622931103.6989017-CDS-H-elongata_contig7057:5716..5873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7057 5717..5873 -
1691679699.4205956-CDS-H-elongata_contig7057:5716..58731691679699.4205956-CDS-H-elongata_contig7057:5716..5873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7057 5717..5873 -
1622931103.7200482-CDS-H-elongata_contig7057:6178..65951622931103.7200482-CDS-H-elongata_contig7057:6178..6595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7057 6179..6595 -
1691679699.4286435-CDS-H-elongata_contig7057:6178..65951691679699.4286435-CDS-H-elongata_contig7057:6178..6595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7057 6179..6595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7057.14713.1

>prot_H-elongata_contig7057.14713.1 ID=prot_H-elongata_contig7057.14713.1|Name=mRNA_H-elongata_contig7057.14713.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp
QAPGSAGNGIDAALKFQDLHGRLRLLNCVKKRGPMLHTLYALMGTGTLER
RQGVGMAQMLSRAFSEPVAALTGSNHVARPRTALALSTNEAHGGRESNGI
SREQWRADMTKRSGGPARVPVGSEVTERALLRGILYAFQGIDSQYIKYCV
EESRYAIDPRLRLGRSQREIVSRMLEMGWLFKTVMMYCENIGSPDPLGSS
RTQQAFVFSLKEDMTEYYRLIAVLGAQLNLDAAKAAEGSFESRGVTTVTE
GLTLKRLAVWVVDPMERLKQMATLVSAAAKLKLRL*
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mRNA from alignment at H-elongata_contig7057:5226..6595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7057.14713.1 ID=mRNA_H-elongata_contig7057.14713.1|Name=mRNA_H-elongata_contig7057.14713.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1370bp|location=Sequence derived from alignment at H-elongata_contig7057:5226..6595- (Himanthalia elongata Himel1 dioecious)
CAGGCACCGGGCTCTGCTGGCAACGGCATCGATGCCGCCCTGAAGTTCCA AGATCTTCACGGTCGCCTTCGACTGCTGAACTGCGTCAAGAAACGGGGTC CTATGTTGCACACGCTCTACGCGCTCATGGGCACCGGCACGCTCGAGAGA CGCCAGGGCGTGGGAATGGCCCAAATGCTTTCTCGGGCATTTTCGGAGCC CGTGGCCGCGCTTACGGGTAGTAATCACGTCGCGAGGCCGCGGACTGCCC TCGCGCTTTCTACGAACGAGGCGCATGGAGGCAGGGAGTCAAACGGGATT TCTAGGGAACAATGGCGTGCTGATATGACGAAGAGATCGGGAGGGCCGGC CAGAGTGCCCGTTGGAAGTGAGGTGACGGAGAGGGCGCTGTTGCGCGGCA TCCTGTACGCCTTTCAGGTGAACGACCCTGCGTCTTTCGGCGTATCCCTG AGTCCACCCGACATGCCACAAGTTATGTTGTAGGGAAACGCGCGATTCAG CTCAGCTCTTCTTTTGCGCTAGCGTCGGTTTAGATGTGTCATTACGTGGC CTTATGAGCCAATACCTAATTCAAGACGTACCGAACGGAGGCCCGTCATC GGGCGAGGTGTGTCGTCAGCCAATACGTTTCCGGTCACAACGATTGAGAA GCCTAGCTTTCTTTCCCGCCTGAGAAATAGCTCCCACCCCCAGAGGTTCT CTCACCCCATGTGTATTCACAGGGTATCGACAGTCAGTACATCAAGTACT GTGTAGAGGAATCTAGATACGCTATTGACCCGCGCTTGAGGCTAGGACGG TCGCAGCGAGAAATCGTGAGCCGAATGCTTGAGATGGGGTGGCTGTTCAA GACGGTGATGATGTACTGTGAAAATATAGGTGAGGAAAGCGAGGCCGACC CTTTACTCTCTGAATCGATTTTTATCAGTATTTACTATACGATTTACTAT ACGATCGTTGAAATGGTTGATGGCGTAGGAGAGGCGGGAGACGTGTGTCT GATGATACTGACGATATTTCTGGAGGTGGGAGTACAACACTTTAATGGAT CCTTTGCGAACCCTGAATTCCGTTCGGACGGGCCAGGTTCCCCTGACCCC CTCGGGTCAAGCCGTACACAGCAGGCGTTCGTCTTCTCTCTCAAAGAAGA TATGACGGAGTACTACCGACTGATCGCCGTCCTTGGGGCGCAGCTGAACT TGGATGCAGCGAAGGCGGCAGAGGGTAGCTTTGAAAGCCGTGGTGTCACC ACGGTTACGGAGGGCCTAACGCTGAAGCGTCTAGCCGTCTGGGTTGTGGA TCCCATGGAACGCTTGAAGCAAATGGCCACTTTGGTGTCGGCGGCGGCAA AACTGAAGTTGAGGCTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig7057:5226..6595-

>mRNA_H-elongata_contig7057.14713.1 ID=mRNA_H-elongata_contig7057.14713.1|Name=mRNA_H-elongata_contig7057.14713.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig7057:5226..6595- (Himanthalia elongata Himel1 dioecious)
CAGGCACCGGGCTCTGCTGGCAACGGCATCGATGCCGCCCTGAAGTTCCA
AGATCTTCACGGTCGCCTTCGACTGCTGAACTGCGTCAAGAAACGGGGTC
CTATGTTGCACACGCTCTACGCGCTCATGGGCACCGGCACGCTCGAGAGA
CGCCAGGGCGTGGGAATGGCCCAAATGCTTTCTCGGGCATTTTCGGAGCC
CGTGGCCGCGCTTACGGGTAGTAATCACGTCGCGAGGCCGCGGACTGCCC
TCGCGCTTTCTACGAACGAGGCGCATGGAGGCAGGGAGTCAAACGGGATT
TCTAGGGAACAATGGCGTGCTGATATGACGAAGAGATCGGGAGGGCCGGC
CAGAGTGCCCGTTGGAAGTGAGGTGACGGAGAGGGCGCTGTTGCGCGGCA
TCCTGTACGCCTTTCAGCAGGCACCGGGCTCTGCTGGCAACGGCATCGAT
GCCGCCCTGAAGTTCCAAGATCTTCACGGTCGCCTTCGACTGCTGAACTG
CGTCAAGAAACGGGGTCCTATGTTGCACACGCTCTACGCGCTCATGGGCA
CCGGCACGCTCGAGAGACGCCAGGGCGTGGGAATGGCCCAAATGCTTTCT
CGGGCATTTTCGGAGCCCGTGGCCGCGCTTACGGGTAGTAATCACGTCGC
GAGGCCGCGGACTGCCCTCGCGCTTTCTACGAACGAGGCGCATGGAGGCA
GGGAGTCAAACGGGATTTCTAGGGAACAATGGCGTGCTGATATGACGAAG
AGATCGGGAGGGCCGGCCAGAGTGCCCGTTGGAAGTGAGGTGACGGAGAG
GGCGCTGTTGCGCGGCATCCTGTACGCCTTTCAGGGTATCGACAGTCAGT
ACATCAAGTACTGTGTAGAGGAATCTAGATACGCTATTGACCCGCGCTTG
AGGCTAGGACGGTCGCAGCGAGAAATCGTGAGCCGAATGCTTGAGATGGG
GTGGCTGTTCAAGACGGTGATGATGTACTGTGAAAATATAGGGTATCGAC
AGTCAGTACATCAAGTACTGTGTAGAGGAATCTAGATACGCTATTGACCC
GCGCTTGAGGCTAGGACGGTCGCAGCGAGAAATCGTGAGCCGAATGCTTG
AGATGGGGTGGCTGTTCAAGACGGTGATGATGTACTGTGAAAATATAGGT
TCCCCTGACCCCCTCGGGTCAAGCCGTACACAGCAGGCGTTCGTCTTCTC
TCTCAAAGAAGATATGACGGAGTACTACCGACTGATCGCCGTCCTTGGGG
CGCAGCTGAACTTGGATGCAGCGAAGGCGGCAGAGGGTAGCTTTGAAAGC
CGTGGTGTCACCACGGTTACGGAGGGCCTAACGCTGAAGCGTCTAGCCGT
CTGGGTTGTGGATCCCATGGAACGCTTGAAGCAAATGGCCACTTTGGTGT
CGGCGGCGGCAAAACTGAAGTTGAGGCTATAAGTTCCCCTGACCCCCTCG
GGTCAAGCCGTACACAGCAGGCGTTCGTCTTCTCTCTCAAAGAAGATATG
ACGGAGTACTACCGACTGATCGCCGTCCTTGGGGCGCAGCTGAACTTGGA
TGCAGCGAAGGCGGCAGAGGGTAGCTTTGAAAGCCGTGGTGTCACCACGG
TTACGGAGGGCCTAACGCTGAAGCGTCTAGCCGTCTGGGTTGTGGATCCC
ATGGAACGCTTGAAGCAAATGGCCACTTTGGTGTCGGCGGCGGCAAAACT
GAAGTTGAGGCTATAA
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