mRNA_H-elongata_contig70563.14711.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70563.14711.1
Unique NamemRNA_H-elongata_contig70563.14711.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig70563.14711.1 vs. uniprot
Match: D7FMY1_ECTSI (Aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMY1_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 1.870e-70
Identity = 109/139 (78.42%), Postives = 126/139 (90.65%), Query Frame = 1
Query:    1 AQVCDMDRLLEICDKHGLTLIEDCAHALGVTWRGEQLGSRAKVAAFSMQSDKLINSGEGGMLTTSDEEIVAKAIYMSGCYELRYGKHSIRANDELMLEAMRSQPNLSMRMTEMTAAVIRPLLASLPERSAQFKRRYDEV 417
            +++CDMDRL EICDKHGLT++EDCAHALGV WRG QLG+RAKVAA+S QSDKLINSGEGG LTT+DEE+ +KAIYMSGCYE+RYGKHS+R +DELM +AM S+ NLS+RMTEMTAAVIRPLLA+LPER AQF RRY EV
Sbjct:  183 SKMCDMDRLYEICDKHGLTVVEDCAHALGVNWRGTQLGNRAKVAAYSCQSDKLINSGEGGFLTTNDEELFSKAIYMSGCYEMRYGKHSVRGSDELMEKAMLSERNLSVRMTEMTAAVIRPLLANLPERVAQFHRRYQEV 321          
BLAST of mRNA_H-elongata_contig70563.14711.1 vs. uniprot
Match: A0A7S3ZU99_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZU99_9STRA)

HSP 1 Score: 194 bits (494), Expect = 6.820e-58
Identity = 90/138 (65.22%), Postives = 112/138 (81.16%), Query Frame = 1
Query:    4 QVCDMDRLLEICDKHGLTLIEDCAHALGVTWRGEQLGSRAKVAAFSMQSDKLINSGEGGMLTTSDEEIVAKAIYMSGCYELRYGKHSIRANDELMLEAMRSQPNLSMRMTEMTAAVIRPLLASLPERSAQFKRRYDEV 417
            +VCDMDR++EIC+K+G+TL+EDCAH+ GVTWRG+QLG  AKV A+S QSDK+INSGEGG +TT D+EI AK IY+SGCYE RYGKH++R  DEL   AM   PNLS RM E+TAAV+RPL+ +LP+R   + RRYD V
Sbjct:  185 KVCDMDRVVEICEKNGITLVEDCAHSCGVTWRGKQLGYHAKVTAYSTQSDKVINSGEGGFITTDDDEIAAKIIYLSGCYERRYGKHAVRPADELCEVAMAEMPNLSCRMNEVTAAVMRPLIKNLPQRVEDYNRRYDSV 322          
BLAST of mRNA_H-elongata_contig70563.14711.1 vs. uniprot
Match: A0A7S4E6V5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6V5_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.070e-55
Identity = 88/138 (63.77%), Postives = 111/138 (80.43%), Query Frame = 1
Query:    4 QVCDMDRLLEICDKHGLTLIEDCAHALGVTWRGEQLGSRAKVAAFSMQSDKLINSGEGGMLTTSDEEIVAKAIYMSGCYELRYGKHSIRANDELMLEAMRSQPNLSMRMTEMTAAVIRPLLASLPERSAQFKRRYDEV 417
            +V DMDR++EIC+K+G+TL+EDCAH+ GVTWRG+QLG  AKV A+S QSDK+INSGEGG +TT D+EI AK IY+SGCYE RYGKH++R  D+L   AM   PNLS RM E+TAAV+RPL+ +LP+R   + RRYD V
Sbjct:  182 KVADMDRVVEICEKNGITLVEDCAHSCGVTWRGKQLGYHAKVTAYSTQSDKVINSGEGGFVTTDDDEIAAKMIYLSGCYERRYGKHAVRPPDDLCEVAMAEMPNLSCRMNEVTAAVMRPLIKNLPQRVEAYNRRYDAV 319          
BLAST of mRNA_H-elongata_contig70563.14711.1 vs. uniprot
Match: A0A6H5K4I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I9_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.440e-55
Identity = 91/138 (65.94%), Postives = 111/138 (80.43%), Query Frame = 1
Query:    4 QVCDMDRLLEICDKHGLTLIEDCAHALGVTWRGEQLGSRAKVAAFSMQSDKLINSGEGGMLTTSDEEIVAKAIYMSGCYELRYGKHSIRANDELMLEAMRSQPNLSMRMTEMTAAVIRPLLASLPERSAQFKRRYDEV 417
            +VCDMDR+ EIC++H LTL+EDCAHA GVTWRG QLG  AKV+AFS QSDK+INSGEGG +TTSD+E+ AKAIY+SG YE RY KH +R +D L   A  S+PNLS+RM+E TAAV+RPLL SLP R  ++ RRY+ V
Sbjct:   88 KVCDMDRVSEICERHRLTLVEDCAHAAGVTWRGRQLGYHAKVSAFSTQSDKVINSGEGGFVTTSDDEMAAKAIYLSGAYEGRYSKHLVRPSDALCEAARFSEPNLSVRMSETTAAVLRPLLKSLPSRVLEYNRRYNIV 225          
BLAST of mRNA_H-elongata_contig70563.14711.1 vs. uniprot
Match: A0A8J2WEJ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEJ6_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.570e-54
Identity = 88/138 (63.77%), Postives = 111/138 (80.43%), Query Frame = 1
Query:    4 QVCDMDRLLEICDKHGLTLIEDCAHALGVTWRGEQLGSRAKVAAFSMQSDKLINSGEGGMLTTSDEEIVAKAIYMSGCYELRYGKHSIRANDELMLEAMRSQPNLSMRMTEMTAAVIRPLLASLPERSAQFKRRYDEV 417
            +V DMDR++EIC+K+G+TL+EDCAH+ GVTWRG+QLG  AKV A+S QSDK+INSGEGG +TT D+EI AK IY+SGCYE RYGKH++R  D+L   AM   PNLS RM E+TAAV+RPL+ +LP+R   + RRYD V
Sbjct:  118 KVADMDRVVEICEKNGITLVEDCAHSCGVTWRGKQLGYHAKVTAYSTQSDKVINSGEGGFVTTDDDEIAAKMIYLSGCYERRYGKHAVRPPDDLCEVAMAEMPNLSCRMNEVTAAVMRPLIKNLPQRVEAYNRRYDAV 255          
BLAST of mRNA_H-elongata_contig70563.14711.1 vs. uniprot
Match: A0A7S0J159_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J159_9EUKA)

HSP 1 Score: 164 bits (416), Expect = 7.790e-46
Identity = 80/138 (57.97%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    4 QVCDMDRLLEICDKHGLTLIEDCAHALGVTWRGEQLGSRAKVAAFSMQSDKLINSGEGGMLTTSDEEIVAKAIYMSGCYELRYGKHSIRANDELMLEAMRSQPNLSMRMTEMTAAVIRPLLASLPERSAQFKRRYDEV 417
            +V DMDR+ +IC +HGL L+EDCAH+ GV WRG QLG   +VAA+S QSDK+INSGEGG LTT+D  ++AKAIY+SGCYE RY KH      EL   AM   PNLS RM E+TAA +RPL+A+L  R  ++  RY  V
Sbjct:  243 KVADMDRVADICQRHGLRLVEDCAHSCGVKWRGRQLGYHGEVAAYSTQSDKVINSGEGGFLTTNDGGLMAKAIYLSGCYERRYAKHGTPPPKELCEAAMMEMPNLSCRMNEVTAACVRPLIANLDARVVEYNDRYAVV 380          
BLAST of mRNA_H-elongata_contig70563.14711.1 vs. uniprot
Match: A0A7S3FD09_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FD09_9VIRI)

HSP 1 Score: 162 bits (409), Expect = 3.000e-45
Identity = 77/136 (56.62%), Postives = 104/136 (76.47%), Query Frame = 1
Query:    4 QVCDMDRLLEICDKHGLTLIEDCAHALGVTWRGEQLGSRAKVAAFSMQSDKLINSGEGGMLTTSDEEIVAKAIYMSGCYELRYGKHSIRANDELMLEAMRSQPNLSMRMTEMTAAVIRPLLASL-PERSAQFKRRY 408
            +VCDMDR++EIC+K+GLTL+EDCAH  GV W+G QLG  A VA +S QSDK+INSGEGG +TT  ++I A+AIY +GCYE RY KH ++  + L  + M ++PNLS RMTE+TAA++RPL+ +L  ER  ++  RY
Sbjct:  191 KVCDMDRVVEICEKYGLTLVEDCAHGCGVMWKGRQLGYHAAVACYSTQSDKVINSGEGGFITTDVDDIAAQAIYYTGCYERRYNKHLVQPPEYLCEQYMLTKPNLSCRMTEVTAAMMRPLIRNLYSERKPRYNARY 326          
BLAST of mRNA_H-elongata_contig70563.14711.1 vs. uniprot
Match: A0A7S3NJM7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJM7_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.090e-42
Identity = 79/138 (57.25%), Postives = 96/138 (69.57%), Query Frame = 1
Query:    4 QVCDMDRLLEICDKHGLTLIEDCAHALGVTWRGEQLGSRAKVAAFSMQSDKLINSGEGGMLTTSDEEIVAKAIYMSGCYELRYGKHSIRANDELMLEAMRSQPNLSMRMTEMTAAVIRPLLASLPERSAQFKRRYDEV 417
            +VCDMDRL+EIC +    L+EDCAH  GV W   QLG    +A++S QSDK+INSGEGG+L T D +I A+ IYMSG YE RY KH  R +D L  EAM   PNLS RM+E+TAAV RPLLA+LP R   +  RYD +
Sbjct:  167 RVCDMDRLVEICAER--ILLEDCAHGCGVKWNNRQLGYHGVLASYSTQSDKVINSGEGGLLVTDDAQIAAQLIYMSGAYERRYQKHLTRPDDILCEEAMLKYPNLSCRMSELTAAVARPLLANLPSRVITYNARYDLI 302          
BLAST of mRNA_H-elongata_contig70563.14711.1 vs. uniprot
Match: K8ECV9_9CHLO (Aminotransferase, DegT/DnrJ/EryC1/StrS family protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8ECV9_9CHLO)

HSP 1 Score: 154 bits (389), Expect = 6.930e-42
Identity = 74/136 (54.41%), Postives = 100/136 (73.53%), Query Frame = 1
Query:    4 QVCDMDRLLEICDKHGLTLIEDCAHALGVTWRGEQLGSRAKVAAFSMQSDKLINSGEGGMLTTSDEEIVAKAIYMSGCYELRYGKHSIRANDELMLEAMRSQPNLSMRMTEMTAAVIRPLLASL-PERSAQFKRRY 408
            +VCDMD+++ IC+KHG+ LIEDCAH  GV ++G QLG    V A+S QSDK+INSGEGG +TT D++I A+ +YMSGCYE RY KH+     EL  + M + PNLS RM E+TAA++RPL+A+L  ER  ++  R+
Sbjct:  251 KVCDMDKVVAICEKHGMKLIEDCAHGCGVRYKGRQLGYHGVVTAYSTQSDKVINSGEGGFITTDDDDIAARCLYMSGCYERRYSKHARMPPQELCEKYMLTMPNLSSRMNEVTAAMMRPLIANLYSERLPRYMERW 386          
BLAST of mRNA_H-elongata_contig70563.14711.1 vs. uniprot
Match: L1IIK5_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IIK5_GUITC)

HSP 1 Score: 139 bits (349), Expect = 2.160e-36
Identity = 66/138 (47.83%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    4 QVCDMDRLLEICDKHGLTLIEDCAHALGVTWRGEQLGSRAKVAAFSMQSDKLINSGEGGMLTTSDEEIVAKAIYMSGCYELRYGKHSIRANDELMLEAMRSQPNLSMRMTEMTAAVIRPLLASLPERSAQFKRRYDEV 417
            +V DMD++ ++C   G+ L+EDCAH+LGV WRGE  G +  ++ FS QS K++NSGEGG L T D+E+ AK I  +G YE  Y KHS+R  DE+  E     PN SMRM  +TAA+I P +++L ER  ++ RRY ++
Sbjct:  204 KVADMDKIEQVCKDRGIVLLEDCAHSLGVYWRGEHTGHKGVMSCFSSQSYKMLNSGEGGFLLTDDDELAAKMILYAGAYEKLYHKHSLRPADEIFEEIKHEIPNYSMRMHGVTAAMIYPQISTLDERIEKYNRRYLDI 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70563.14711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMY1_ECTSI1.870e-7078.42Aminotransferase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A7S3ZU99_9STRA6.820e-5865.22Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S4E6V5_9STRA1.070e-5563.77Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6H5K4I9_9PHAE1.440e-5565.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2WEJ6_9STRA2.570e-5463.77Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0J159_9EUKA7.790e-4657.97Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3FD09_9VIRI3.000e-4556.62Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A7S3NJM7_9STRA1.090e-4257.25Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
K8ECV9_9CHLO6.930e-4254.41Aminotransferase, DegT/DnrJ/EryC1/StrS family prot... [more]
L1IIK5_GUITC2.160e-3647.83Uncharacterized protein n=2 Tax=Guillardia theta T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70563contigH-elongata_contig70563:136..2768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue4.1e-55
Seed eggNOG ortholog2880.D7FMY1
EggNOG free text desc.Aminotransferase, DegT DnrJ EryC1 StrS family protein
EggNOG OGs2QQV8@2759,COG0399@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAminotransferase
Ec32 orthologEc-25_002750.1
Exons3
Model size417
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70563.14711.1prot_H-elongata_contig70563.14711.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70563 151..2768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931103.393508-UTR-H-elongata_contig70563:135..1501622931103.393508-UTR-H-elongata_contig70563:135..150Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70563 136..150 +
1691679699.2744231-UTR-H-elongata_contig70563:135..1501691679699.2744231-UTR-H-elongata_contig70563:135..150Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70563 136..150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931103.4053135-CDS-H-elongata_contig70563:150..2611622931103.4053135-CDS-H-elongata_contig70563:150..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70563 151..261 +
1691679699.285523-CDS-H-elongata_contig70563:150..2611691679699.285523-CDS-H-elongata_contig70563:150..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70563 151..261 +
1622931103.4171436-CDS-H-elongata_contig70563:1854..19811622931103.4171436-CDS-H-elongata_contig70563:1854..1981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70563 1855..1981 +
1691679699.2935972-CDS-H-elongata_contig70563:1854..19811691679699.2935972-CDS-H-elongata_contig70563:1854..1981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70563 1855..1981 +
1622931103.4288065-CDS-H-elongata_contig70563:2604..27681622931103.4288065-CDS-H-elongata_contig70563:2604..2768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70563 2605..2768 +
1691679699.3020937-CDS-H-elongata_contig70563:2604..27681691679699.3020937-CDS-H-elongata_contig70563:2604..2768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70563 2605..2768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70563.14711.1

>prot_H-elongata_contig70563.14711.1 ID=prot_H-elongata_contig70563.14711.1|Name=mRNA_H-elongata_contig70563.14711.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MDRLLEICDKHGLTLIEDCAHALGVTWRGEQLGSRAKVAAFSMQSDKLIN
SGEGGMLTTSDEEIVAKAIYMSGCYELRYGKHSIRANDELMLEAMRSQPN
LSMRMTEMTAAVIRPLLASLPERSAQFKRRYDEV
back to top

mRNA from alignment at H-elongata_contig70563:136..2768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70563.14711.1 ID=mRNA_H-elongata_contig70563.14711.1|Name=mRNA_H-elongata_contig70563.14711.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2633bp|location=Sequence derived from alignment at H-elongata_contig70563:136..2768+ (Himanthalia elongata Himel1 dioecious)
GCGCAGGTTTGTGACATGGACCGTCTTCTGGAGATTTGCGACAAGCACGG CCTGACCCTAATCGAAGACTGCGCCCATGCCTTAGGGGTCACCTGGCGTG GCGAGCAGCTCGGGTCGCGGGCTAAGGTATATACTCTTCGTCTTTTTCGA AGGGTTCGCATGCGTCAGAGATTTCGGGATGTAAACCTAATTCCTATTAT TTATAACTAACTATTATTATTGTACCTATGTTCAAACTATAGCAATTAAT AGTATTATTATCGATACAACATACAGTAGTAGTAGTAGTAGTAGTATTAT TATAGTATTAATAGTAGATCGGTACAACAAGCAGATGAGGCCTATCAACG TGCCAGGTTAGTACGAATCCAACTTTCTTGCGAATGAAGTTTTTTTTTAC TTCAAATAAAGACAACATCCTCTTCAGAATAGAGTTCCTTTCTATATATA TGTGTACCATTATTACTAGTATTTCATGGAAAAATATAGCAGTCAGTCGT TAGATCAGACAGTGGCGGTCTCCTGAGCTCTCATGGGATAATCTCGCCCT CTCCGGCAGGTTTGAGGCGCGGTATCTAGCTCGAGCAAGTATTTGAATTT GGCTTGGAAATAATGTAGTTGATATCTCCGAGCGCAGCCACTTTACGCGT CTGGCGATCTGTAACTATAAGATTTTGTCCGCATGCAACTACATAATAAT GTGCCTTTGAGGTACCGAGGCATACCGTGGCGCATGGAACGCTGACGGCT ATAATATGCTGCGCGTATTATGCATCTACACGCGCACGAGGGCTCATCCT TCAGCGTTCGTGTCTAACAAAACCGCTGGATTGCTAGAAGACACGAACAC ATCATGTCTATCGCGGTACACCAGCATAATAATAGTAAAACATCTCCCAC TCGATGCGACCTTCGCCGACCGTTCTTAGGCGGCGGTGCATCTGCTAGCT ATATCTTCGACTAATTTGCAGCCAGCCGCGACCTATGGCGCGTGCAAAAA TGCACACCATACACACGGCGAAGAAAAGCTTTTTTTTCCCATTAGCCTAG CCTAGCAAGGTAGTGTCATACTCTGCACCCTAACAGTCATACTCTGCACC CTAACAAACCACAACAGTTAGTTGAAAAAATTGGGCACTACGGGGGAAAA TAGTGGTGTGCGTTTTTGGGAGGGGTTGCCAGGAGATGATCGACCAACAT GGAGGGGGGGGGGGGTACAAGAGCATATCATGCAGCAAGAGTAGCCTCGA TCACCTTCCAGGTTATCATCTCGCAGCAGGTTTGGAGATTCGACCTCTTC GCGTCCGGAACCGCGAAGCAAGCGGCGAAGGCTAAATGCCCTTGACGGAG TCAATCTTTATCGGATCCCTGGACGAACGAGAGTAGAGCCTCGATTATTA TTATTTATTTATTTTTCGTAGAAAGTCGTGGCCACTGTTTTTACCCTTCA GATGAAGGGTTTTGTTTCTGTTTTTACATGTAGAAAAATGATGGGGAGAG GTGTTTTCAGTCTTAAGTCATTAGGCGAGAATACTAATAATACATACAGT TGAAAGTACAAGTAGTCACAAAAAAAACAAGATTAACTACATCTCAAAAT ATGCGATACGATTTCGTTAGTTTCATCGAAAAATTATTAATAATACGCGA GGGCGTTTAAGTCGCGTGGATAAACCGTCGACTCTTCTTCAACCGTCGAC TCTTCATGCATCACCCCAGGTCGCCGCCTTTTCGATGCAATCCGACAAAC TCATCAACTCTGGCGAGGGTGGAATGCTGACAACCTCGGACGAGGAAATC GTCGCCAAAGCCATTTATATGTCTGGATGTTACGAGCTGCGCTATGGTGA GGCGCCATAATTCATAATCAATGGTAGCAAAACAACATTTTAGCATTGTT AAGTGGTTGTGAAGGTCGGCCTAACCGTAACTTTGTTATGAGCCATAGGA GTAGATATCAACTTGATGATTTCCTTGTATATAACAAATGCTGCTCTAAT TTTTCGTCCGCATGCTTCATTCTGTTTCCACCACTTCAACAAAAGAGCGT CTCCTCGACCGCGGATCGTGGTATACATCCACTTTCCGCTGGTTGGTTCA AAATTTGTCCCTCATTTATGTCCGGTTGCCGGACTGTACACCGCAGAAAC ATATCTCATACGAAGCGCTACGACCGGGGGTATGACAAATCGATTCCTTG AATGGGGCGAATTTTGACCTTCCTCTCTATTAGCCGACGATCGAGCTATT ATTTTCCCCGTTTTATATATGGATTGATCTATGTTTTTTTACATAATACC GGTATGTTGCAGCATCATCAGTAGCACTGAACTTGTTTGTAGTACTGTTT CTGTTTATTGCCCGCTTAATCCCTTAATTATTCGACGTCTTTCCAACATG GTTGCACGTGTGACCCCCCTCGTCTACTTATGCCATCTTCTACTGCGTAT GGTATGGTATGATATACAGGGAAACACTCGATTCGCGCCAACGACGAGCT CATGCTTGAGGCCATGCGTTCGCAGCCCAATCTGTCCATGCGCATGACGG AGATGACTGCCGCCGTGATCCGACCGCTCCTCGCCAGTCTTCCCGAGAGG TCGGCCCAGTTCAAGCGCCGCTACGATGAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig70563:136..2768+

>mRNA_H-elongata_contig70563.14711.1 ID=mRNA_H-elongata_contig70563.14711.1|Name=mRNA_H-elongata_contig70563.14711.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig70563:136..2768+ (Himanthalia elongata Himel1 dioecious)
ATGGACCGTCTTCTGGAGATTTGCGACAAGCACGGCCTGACCCTAATCGA
AGACTGCGCCCATGCCTTAGGGGTCACCTGGCGTGGCGAGCAGCTCGGGT
CGCGGGCTAAGATGGACCGTCTTCTGGAGATTTGCGACAAGCACGGCCTG
ACCCTAATCGAAGACTGCGCCCATGCCTTAGGGGTCACCTGGCGTGGCGA
GCAGCTCGGGTCGCGGGCTAAGGTCGCCGCCTTTTCGATGCAATCCGACA
AACTCATCAACTCTGGCGAGGGTGGAATGCTGACAACCTCGGACGAGGAA
ATCGTCGCCAAAGCCATTTATATGTCTGGATGTTACGAGCTGCGCTATGG
TCGCCGCCTTTTCGATGCAATCCGACAAACTCATCAACTCTGGCGAGGGT
GGAATGCTGACAACCTCGGACGAGGAAATCGTCGCCAAAGCCATTTATAT
GTCTGGATGTTACGAGCTGCGCTATGGGAAACACTCGATTCGCGCCAACG
ACGAGCTCATGCTTGAGGCCATGCGTTCGCAGCCCAATCTGTCCATGCGC
ATGACGGAGATGACTGCCGCCGTGATCCGACCGCTCCTCGCCAGTCTTCC
CGAGAGGTCGGCCCAGTTCAAGCGCCGCTACGATGAGGTGGGAAACACTC
GATTCGCGCCAACGACGAGCTCATGCTTGAGGCCATGCGTTCGCAGCCCA
ATCTGTCCATGCGCATGACGGAGATGACTGCCGCCGTGATCCGACCGCTC
CTCGCCAGTCTTCCCGAGAGGTCGGCCCAGTTCAAGCGCCGCTACGATGA
GGTG
back to top