mRNA_H-elongata_contig7055.14708.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7055.14708.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.930e-18 Identity = 123/458 (26.86%), Postives = 175/458 (38.21%), Query Frame = 1
Query: 1 MLEAGAQIDVQNRGGRTPLHVAAATGSVDALLALLRNGASMMLDKKRLSXXXXXXXXXXXXXXXXXXXXXAVVSLRSSIGEC-SALDLAATSGHAKVLEVIIPHMADVNATDSCGRTVLHRAACFDQSASIDELFQAGANLEVR--DRGLGWTPLHDASAEGSLNAIAALLRHGANKDSLDVDGR------SXXXXXXXXXXXXXXXXXXXXXADPSLRYGKSELNVLNVALXXXXXXXXXXXXXXXXXVNAADSRGLTALHHAAFVDEPGSIELLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFRAVDMAGWSPLHDAAAEGASNAIAALLLRGVNRNLXXXXXXXXXXXXXXXXHL-----------------EATKHLLAAGTDVTCRIGESE-NAALDIAVIEGHL--GIMRALIRRGADVNAADSVGGTALYRAALFNQV 1287
+L GA++DV + GRTP+H++A GS+ A+ ALL G SLR GE SAL LAA GH +V++ +I H DV+A DS G T LH AA D +I+ L +AGAN++ + + G +TPLH AS +G A +L++H A+ R + + +LR S L+ A V+A DSRG TAL + I+ LV V+ G +PLH A + AI ++L XXXXXX L +AT LL AG DV ++ +AA +A + GIM LI+ G DVN ++ +AL+RAA + +
Sbjct: 101 LLRDGAEVDVLDTKGRTPIHLSAKRGSLSAVQALLAAGGDS--------------------------------SLRYGKGEAFSALGLAARGGHVEVMQALIRHGVDVDAPDSNGLTALHSAATGDAVGAIETLMEAGANIDAQGGEDGARYTPLHMASEKGLSEAALSLVKHRADVHRSGKMSRRERKCCNALSLAAGRGHIAVVKSLLAAGVNVNLRPAYSGELALDAAFQGGHADIVTTLIQHGAFVDATDSRGCTALFKVSLDTNAALIDKLVAAGAAMNGI----------------------------------VNATGRTPLHHACMDDCPEAIVSMLRHXXXXXXXXXXXXGARVDAKDDDALTAKGRTPLGLTAEFGCEDATVVLLDAGADVKAPANSADGSAAPSLATLNDFNADGIMNVLIQHGVDVNGKNNEEFSALHRAAYHDDI 492
BLAST of mRNA_H-elongata_contig7055.14708.1 vs. uniprot
Match: D8LJC1_ECTSI (Ankyrin repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC1_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 4.960e-14 Identity = 69/204 (33.82%), Postives = 96/204 (47.06%), Query Frame = 1
Query: 220 SLRSSIGEC-SALDLAATSGHAKVLEVIIPHMADVNATDSCGRTVLHRAACFDQSASIDELFQAGANLEVR--DRGLGWTPLHDASAEGSLNAIAALLRHGAN---KDSLDVDGRSXXXXXXXXXXXXXXXXXXXXXA---DPSLRYGKSELNVLNVALXXXXXXXXXXXXXXXXXVNAADSRGLTALHHAAFVDEPGSIELLV 804
SLR G+ SAL LAA GH +V++ +I H DVNA DS G T LH AA D +ID L +AGA+++ + + G +TPLH AS +GS A +L++HGA+ + GRS A + +LR S+ + L+ A V+A DSRG TAL + I+ LV
Sbjct: 99 SLRYGKGKAFSALGLAARGGHVEVMQALIRHGVDVNAPDSNGCTALHSAAIGDAVGAIDVLIEAGASIDAQGGEDGEMYTPLHVASEKGSSEAALSLVKHGADVHRSGRMSRWGRSCGNALILAAGRGHTMIVTSLLAAGVNVNLRPAYSDKSALDAAFQGGHADIVTTLIQHGAFVDATDSRGCTALFKVSHDTNAALIDKLV 302
BLAST of mRNA_H-elongata_contig7055.14708.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 3.310e-13 Identity = 119/398 (29.90%), Postives = 164/398 (41.21%), Query Frame = 1
Query: 220 SLRSSIGEC-SALDLAATSGHAKVLEVIIPHMADVNATDSCGRTVLHRAACFDQSASIDELFQAGANLEVR--DRGLGWTPLHDASAEGSLNAIAALLRHGANKDSLDVDGR----SXXXXXXXXXXXXXXXXXXXXXADPSLRYGKSELNVLNVALXXXXXXXXXXXXXXXXXVNAADSRGLTALHHAAFVDEPGSIELLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFRAVDMAGWSPLHDAAAEGASNAIAALLLRGVNRNLXXXXXXXXXXXXXXXXHLEATKHLLAAGTDVTCRIGESE----------------------------------NAALDIAVIEGHLG-IMRALIRRGADVNAADSVGGTALYRAALFNQV 1287
SLR G+ SAL LAA GH +V++ +I H DV+ DS G T LH AA D +ID L +AGA+++ + + G +TPLH AS +GS A +L++HGA+ R + + +LR S+ + L+ A XXXXXXXXXX V+A DSRG TAL + I+ LV VD G +PLH A AI ++L G + XXXXXXXXXXXX +AAL +A + ++ M+ LI+ GADVNA ++ G TAL+RAA++N+V
Sbjct: 168 SLRYGKGKAFSALGLAARGGHVEVMQALIRHGVDVDGPDSNGCTALHSAAIGDAVGAIDVLIEAGASIDAQGGEDGARYTPLHVASEQGSSEAALSLVKHGADVHRSGKTCRRRRCNALNLAAGRGHTMIVTSLLAAGVNVNLRPAYSDKSALDAAFQGXXXXXXXXXXQHGAFVDATDSRGCTALFKVSHNTNAALIDKLVAAGASVNGI----------------------------------VDATGRTPLHHACMNDCPEAIISMLRHGARVDAKDDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPADHTDGSAALSLATLSEYVDDTMKILIQHGADVNARNTDGFTALHRAAMYNEV 531
BLAST of mRNA_H-elongata_contig7055.14708.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.180e-10 Identity = 58/190 (30.53%), Postives = 93/190 (48.95%), Query Frame = 1
Query: 1 MLEAGAQIDVQNRGGRTPLHVAAATGSVDALLALLRNGASMM--LDKKRLSXXXXXXXXXXXXXXXXXXXXXAVVSLRSSIGE---CSALDLAATSGHAKVLEVIIPHMADVNATDSCGRTVLHRAACFDQSASIDELFQAGANLEVRDRGL--GWTPLHDASAEGSLNAIAALLRHGANKDSLDVDGRS 549
+L GA + + GRTPLH+AAA+G+ + LL N + + LD + +S A ++LR + G +A+D+A + GH V+E I+ + +V ATD+ G T LH A + ++D L AGA++ + G+TPL + S A+ ALL+ G N + + G S
Sbjct: 158 LLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHAR---GAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLS 344
BLAST of mRNA_H-elongata_contig7055.14708.1 vs. uniprot
Match: A0A2E9FXI6_9RHOB (Uncharacterized protein n=1 Tax=Thalassobius sp. TaxID=1979401 RepID=A0A2E9FXI6_9RHOB) HSP 1 Score: 63.2 bits (152), Expect = 5.830e-8 Identity = 33/100 (33.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 247 SALDLAATSGHAKVLEVIIPHMADVNATDSCGRTVLHRAACFDQSASIDELFQAGANLEVRDRGLGWTPLHDASAEGSLNAIAALLRHGANKDSLDVDGR 546
+AL AA G+ K++E+++ AD+NA + G+T L+ A D +++ L GA+L + +T LH A+ +G ALL+ GAN + D +G+
Sbjct: 66 TALHQAAFYGYEKIIELLVAKGADINAVNEAGQTPLYSAIHADHVQAVEALLNHGASLSTKYTDNRYTALHLAALDGKYEVAEALLKKGANTKAKDANGK 165
BLAST of mRNA_H-elongata_contig7055.14708.1 vs. uniprot
Match: D7G744_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G744_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 1.200e-7 Identity = 60/180 (33.33%), Postives = 86/180 (47.78%), Query Frame = 1
Query: 1 MLEAGAQIDVQNRGGR------TPLHVAAATGSVDALLALLRNGASMMLDK--KRLSXXXXXXXXXXXXXXXXXXXXXAVVSLRSSIGECSALDLAATSGHAKVLEVIIPHMADVNATDSCGRTVLHRAACFDQSASIDELFQAGANLEVRDRGLGWTPLHDASAEGSLNAIAALLRHGA 516
++EAGA I+VQ GG+ TPLH+A+ GS +A L+L+++ A + K +R S A V+LR + SALD A + A V+ATDS GRT L + + A ID+L A A++ G TPLH A + A+ ++LRHGA
Sbjct: 187 LIEAGANINVQ--GGKYDDARSTPLHMASKKGSSEAALSLVKHRADVHRLKGYERYSALRLAACSGHIAIVKTLLAAGANVNLRPAALCESALDSARSXXXXXXXXXXXXXXAIVDATDSRGRTALFNVSRENTVAVIDKLVAAWASVNGIVDHYGRTPLHHACLDDYPGAVVSMLRHGA 364
BLAST of mRNA_H-elongata_contig7055.14708.1 vs. uniprot
Match: A0L850_MAGMM (Ankyrin repeat-like protein n=1 Tax=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) TaxID=156889 RepID=A0L850_MAGMM) HSP 1 Score: 63.5 bits (153), Expect = 5.940e-7 Identity = 84/357 (23.53%), Postives = 136/357 (38.10%), Query Frame = 1
Query: 247 SALDLAATSGHAKVLEVIIPHMADVNATDSCGRTVLHRAACFDQSASIDELFQAG-ANLEVRDRGLGWTPLHDASAEGSLNAIAALLRHGANKDSLDVDGRSXXXXXXXXXXXXXXXXXXXXXADPSLRYGKSELNV--------LNVALXXXXXXXXXXXXXXXXXVNAADSRGLTALHHAAFVDEPGSIELLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFRAVDMAGWSPLHDAAAEGASNAIAALLLRGVNRNLXXXXXXXXXXXXXXXXHLEATKHLLAAGT-DVTCRIGESENAALDIAVIEGHLGIMRALIRRGADVNAADSVGGTALYRAALFNQV 1287
+AL LA GH +++++++ AD D G T LH AA ++ A + L +G +++ R + T L+ A +G + + LL GA+ D G++ A L YGK ++ LN+A+ AD G T LH+AA +E E L+ + RA + + L+ A +G + LL G + L L + LL +G DV R E AL++AVI+GH+ +++ L+ +GAD AD G T L+ AA+ N++
Sbjct: 688 TALHLAVMQGHVEMVKLLLAVGADATLADEIGNTPLHVAAFKNELACAEALLGSGKVDVDARAEHI-LTALNMAVMQGHVEMVKLLLAVGADATLADEAGQAPLNVAAGNNELAC--------AAALLIYGKVNVDARAEHSGTALNMAVIQGHVEMVKLLLAVGADATLADEIGNTPLHNAAINNELACAEALLGSGKGDV--------------------------------DARAEHIL--TALNMAVIQGHVEMVKLLLAVGADATLADEFGNTPLHNAAINNELACAEALLGSGKGDVDAR-AEHILTALNMAVIQGHVEMVKLLLEKGADATLADEDGNTPLHVAAIKNEL 1000
BLAST of mRNA_H-elongata_contig7055.14708.1 vs. uniprot
Match: A0A0D2VX59_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VX59_CAPO3) HSP 1 Score: 62.0 bits (149), Expect = 1.520e-6 Identity = 57/189 (30.16%), Postives = 82/189 (43.39%), Query Frame = 1
Query: 43 GRTPLHVAAATGSVDALLALLRNGASMMLDKKRLSXXXXXXXXXXXXXXXXXXXXXAVVSLRSSIGECSALDLAATSGHAKVLEVIIPHMADVNATDSC----GRTVLHRAACFDQSAS--IDELFQAGANLEVRDRGL----------------GWTPLHDASAEGSLNAIAALLRHGANKDSLDVDG 543
GRTPLHVAA G+V+A L LL++GA + K L S+G+ +D AA+ ++L ++ HM D + C G T LH AA + + + L +AG N+E R RG G TPL A G++ A+ LL GAN +++D G
Sbjct: 222 GRTPLHVAALAGAVEAALVLLKHGAGVGTPDK-----------------------FGTTPLMMSMGK--PIDHAASHKPPRLLAAMLKHMRDPRIVNLCEPSSGFTALHYAATQSGTGALLVRMLVEAGGNIEARTRGRRPAPRVITLHSDHLVSGSTPLMLACHRGNVAAVEMLLGLGANPNAVDEAG 385
BLAST of mRNA_H-elongata_contig7055.14708.1 vs. uniprot
Match: A0A7S0J643_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J643_9EUKA) HSP 1 Score: 57.4 bits (137), Expect = 1.780e-6 Identity = 34/90 (37.78%), Postives = 47/90 (52.22%), Query Frame = 1
Query: 235 IGECSALDLAATSGHAKVLEVIIPHMADVNATDSCGRTVLHRAACFDQSASIDELFQAGANLEVRDRGLGWTPLHDASAEGSLNAIAALL 504
IG +A+ +A + + L+ +I ADVNA D G + LH A +A EL AGA R GWTP+H A+A GS+ I +L
Sbjct: 27 IGGWTAMHCSAAVANGEALQELIAAGADVNAADDDGLSPLHLACVGGHAAVAKELLDAGALPTARCAPKGWTPVHFATAVGSIECIRVVL 116
BLAST of mRNA_H-elongata_contig7055.14708.1 vs. uniprot
Match: D7FHH2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH2_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 3.920e-6 Identity = 59/189 (31.22%), Postives = 83/189 (43.92%), Query Frame = 1
Query: 1 MLEAGAQIDVQNR--GGR-TPLHVAAATGSVDALLALLRNGASMMLDKKRLSXXXXXXXXXXXXXXXXXXXXX-------AVVSLRSSIGECSALDLAATSGHAKVLEVIIPHMADVNATDSCGRTVLHRAACFDQSASIDELFQAGANLE-VRDRGLGWTPLHDASAEGSLNAIAALLRHGANKDSLD 534
++EAGA+I+ Q G R TPLH+A+ GS A L+L+++GA + K S A +LR + SAL A V+ATD G + LH+ + A ID+L AGA++ + DR G TPLH A A+ ++LRHGA D D
Sbjct: 229 LIEAGAKINAQGGTYGKRYTPLHMASERGSSKAALSLVKHGADVHRSGKVCSFGRDCSNALNLAARNGHTAIVKTLLAAGANANLRPAYSHHSALXXXXXXXXXXXXXXXXXXXAIVDATDPWGCSPLHKVSGESNVAVIDQLVAAGASVNGIADR-FGRTPLHCACTGDCPEAVVSMLRHGARVDVKD 416 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7055.14708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7055.14708.1 >prot_H-elongata_contig7055.14708.1 ID=prot_H-elongata_contig7055.14708.1|Name=mRNA_H-elongata_contig7055.14708.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=461bp MLEAGAQIDVQNRGGRTPLHVAAATGSVDALLALLRNGASMMLDKKRLSPback to top mRNA from alignment at H-elongata_contig7055:7805..9388- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7055.14708.1 ID=mRNA_H-elongata_contig7055.14708.1|Name=mRNA_H-elongata_contig7055.14708.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1584bp|location=Sequence derived from alignment at H-elongata_contig7055:7805..9388- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7055:7805..9388- >mRNA_H-elongata_contig7055.14708.1 ID=mRNA_H-elongata_contig7055.14708.1|Name=mRNA_H-elongata_contig7055.14708.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2766bp|location=Sequence derived from alignment at H-elongata_contig7055:7805..9388- (Himanthalia elongata Himel1 dioecious)back to top |