mRNA_H-elongata_contig7055.14707.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7055.14707.1
Unique NamemRNA_H-elongata_contig7055.14707.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7055.14707.1 vs. uniprot
Match: D7FRK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRK7_ECTSI)

HSP 1 Score: 421 bits (1082), Expect = 1.440e-138
Identity = 204/296 (68.92%), Postives = 247/296 (83.45%), Query Frame = 1 
Query:    1 GHKPRDNLANKLTYTCMRHGDAELMHKALDLLQITGNAVVPLTVQNVLYMATRKRDAELATKIWVAAQGWGHTFSDVDYSLTVQAFMAVGKDEMALATLVQAFKDGRTVTRKTLTFCAHRLSISNNRLDGAYYTLTSLKQNGETVPVEAVNTIIVGCAIRGGVDRCFSTAEALPAVFELQPNLDTYNALMHVLSKMRKQEIENASLGIGMSLLDKMDSEGVKPDEETFISLVDLACSSEGLSEAVADELVERMTTRYGLRLDQDVVDTLANAFHDRGEEDVAQAWAARLPPLDGAS 888
            G +PRD L NKLTY CMR G+ ELMHK LDLL +TGN V P+TV+NVLYMATR+RD ++ATK+WVAAQ WGH+FS  DYS  VQ F AVGKD+MALATLVQA+K+   V RKTLTFCA RL++SN R+D AYYTLT LK+NGE VPVEAVN+IIV CAIR  VDRCF+TAEALP VFEL PNLDTYNALMHVL  MR Q+ +NA+LGIGMSLLD+++ E VKP++ETF+SL+DLAC S+GL+E  AD+LVERMT+++GLRL+QD+VDTLA+AF +RG + +AQAW  ++P LD  S
Sbjct:  428 GMRPRDPLMNKLTYACMRQGEPELMHKTLDLLLLTGNIVNPMTVKNVLYMATRRRDDDMATKMWVAAQQWGHSFSQADYSFVVQTFFAVGKDDMALATLVQAYKEKVEVNRKTLTFCAQRLAVSNKRVDQAYYTLTLLKENGEPVPVEAVNSIIVACAIRQAVDRCFATAEALPVVFELAPNLDTYNALMHVLGAMRAQDTDNATLGIGMSLLDQIEKEEVKPNQETFMSLIDLACMSDGLTEDFADDLVERMTSKHGLRLEQDIVDTLASAFEERGMDSLAQAWTNKMPSLDAPS 723
[Close]
BLAST of mRNA_H-elongata_contig7055.14707.1 vs. uniprot
Match: W7TTJ6_9STRA (Pentatricopeptide repeat containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTJ6_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.520e-12
Identity = 68/256 (26.56%), Postives = 126/256 (49.22%), Query Frame = 1 
Query:   19 NLANKLTYTCMRHGDAELMHKALDLLQITGNAVVPLTVQNVLYMATRKRDAELATKIWVAAQGWGHTFSDVDYSLTVQAFMAVGKDEMA-LATLVQAFKDGRTVTRKTLTFCAHRLSISNNRLDGAYYTLTSLKQ----------------------NGE----------TVPVE--AVNTIIVGCAIRGGVDRCFSTAEALPAVFELQPNLDTYNALMHVLSKMRKQEIENASLGIGMSLLDKMDSEGVKPDEET 681
            N+  K+    +  G+ +++ + L+ L +  +  + L + N   MA ++ D +LA  ++ A +GWG + +   ++  +QA + + K+++A L  L +    G T +  TL   A +LS S  RLD AY  L +L++                      +GE           +PV   AV  I++GCA    +DR F+T E    VF L  + +  NAL+  L+ +R + ++   +G  +S++++MD  G+ P++ET
Sbjct:  357 NMVTKVLEVGIETGNVKVLRQGLNALTMPVDRGMGLQILN---MAAKRGDGQLAMDVFYALEGWGFSPTASVFNAVIQA-LGISKNDVAMLKALNEMCALGFTPSEGTLHLVARQLSKSVARLDEAYNNLVALQKAYQDHVRQEAEGRQEQQAVDGKDGEGADPAFVPNAPLPVSGSAVYLIVLGCAYANQLDRAFATFEDYQPVFGLAYDTNASNALL--LACLRSRSLQ---VGAAISVMNEMDRLGIAPNDET 603
[Close]
BLAST of mRNA_H-elongata_contig7055.14707.1 vs. uniprot
Match: A0A4D9DA12_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA12_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.940e-12
Identity = 67/255 (26.27%), Postives = 120/255 (47.06%), Query Frame = 1 
Query:   19 NLANKLTYTCMRHGDAELMHKALDLLQITGNAVVPLTVQNVLYMATRKRDAELATKIWVAAQGWGHTFSDVDYSLTVQAFMAVGKDEMALATLVQAFKDGRTVTRKTLTFCAHRLSISNNRLDGAYYTLTSLKQ----------------------NGE----------TVPVE--AVNTIIVGCAIRGGVDRCFSTAEALPAVFELQPNLDTYNALMHVLSKMRKQEIENASLGIGMSLLDKMDSEGVKPDEET 681
            N+  K+    +  G+ +++ + L+ L +  +  + L + N   MA ++ D +LA  ++ A +GWG   + + ++  +QA      D   L  L +    G T +  TL   A +LS S  RLD AY  L +L++                      +GE           +PV   AV  I++GCA    +DR F+T E    VF L  + +  NAL+  L+ +R + ++   +G  +S++++MD  G+ P++ET
Sbjct:  357 NMVTKVLEVGIETGNVKVLRQGLNALTMPVDRGMGLQILN---MAAKRGDGQLAMDVFYALEGWGFPPTALVFNAVIQALGLSKNDVAMLKALNEMCALGFTPSEGTLHLVARQLSKSVARLDEAYNNLVALQKAYQDHVRQEAEGRREQQAVDGKDGEGADPTFVPNAPLPVSGSAVYLIVLGCAYANQLDRAFATFEDYHPVFGLAYDTNASNALL--LACLRSRSLQ---VGAAISVMNEMDRLGIAPNDET 603
[Close]
BLAST of mRNA_H-elongata_contig7055.14707.1 vs. uniprot
Match: A0A7I4ATU3_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4ATU3_PHYPA)

HSP 1 Score: 70.5 bits (171), Expect = 6.670e-10
Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:  382 LDGAYYTLTSLKQNGETVPVEAVNTIIVGCAIRGGVDRCFSTAEALPAVFELQPNLDTYNALMHVLSKMRKQEIENASLGIGMSLLDKMDSEGVKPDEETF 684
            LDGAY+ L  +  +G++VP+ A+N +I+GCA     DR + T E++  +F L P++ + NAL+    K RK  +E       + L + M+  G+ PD+ +F
Sbjct:  454 LDGAYFKLAEMHGSGQSVPLAALNCVILGCAYIWDADRAYQTFESIGNIFGLSPDVHSINALLEAFGKTRKT-VE------AVKLFEYMNEAGITPDQRSF 547
[Close]
BLAST of mRNA_H-elongata_contig7055.14707.1 vs. uniprot
Match: K2RV78_MACPH (Protein-tyrosine phosphatase receptor/non-receptor type n=1 Tax=Macrophomina phaseolina (strain MS6) TaxID=1126212 RepID=K2RV78_MACPH)

HSP 1 Score: 61.6 bits (148), Expect = 6.640e-7
Identity = 63/255 (24.71%), Postives = 103/255 (40.39%), Query Frame = 1 
Query:   19 NLANKLTYTCMRHGDAELMHKALDLL---QITGNAVVPLT--VQNVLYMATRKRDAELATKIWVAAQGWGHTFSDVDYSLTVQAFMAVGKDEMALATLVQAFKDGRTVTRKTLTFCAHRLSISNNRLDGAYYTLTSLKQNGETVPVEAVNTIIVGCAIRGGVDRCFSTAEALPAVFELQPNLDTYNALMHVLSKMRKQEIENASLGIGMSLLDKMDSEGVKPDEETFISLVDLACSSEGLSEAVADELVERMTTR 768
            N++  + Y+ +      L H A++ +   Q+    + P +    N L  A+R  DA+LAT +           +   Y + V+ ++     + AL+ L      G      +       +   ++R    +  L SLK+ G TVPV AVN +I     R  +D+     +AL  V E  P   T+N L     K +          + M L  +M    V+PD  T+  L+ L C SE  +   A    E M +R
Sbjct:  279 NISKAVWYSLLDAASNTLNHPAIEYIWRRQVDPGYLKPSSGICFNALISASRHADADLATTVVRLLGERKEVLTTQHYEMLVETYVKAEDMKTALSVLCIMQSSGTPPDEYSTRLLFKWVRADSSRGIQLFDELRSLKEEGSTVPVAAVNALIEASIYRNDLDQAIDMYKALHTVCESGPTTATFNILFRGCPKRKD---------LAMFLAAEMVERNVEPDALTYDRLL-LVCLSEQDNYDDAFRYYEEMRSR 523
[Close]
BLAST of mRNA_H-elongata_contig7055.14707.1 vs. uniprot
Match: A0A8H4ILH5_9PEZI (Protein-tyrosine phosphatase receptor/non-receptor type n=2 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4ILH5_9PEZI)

HSP 1 Score: 57.4 bits (137), Expect = 1.630e-5
Identity = 53/211 (25.12%), Postives = 82/211 (38.86%), Query Frame = 1 
Query:  136 NVLYMATRKRDAELATKIWVAAQGWGHTFSDVDYSLTVQAFMAVGKDEMALATLVQAFKDGRTVTRKTLTFCAHRLSISNNRLDGAYYTLTSLKQNGETVPVEAVNTIIVGCAIRGGVDRCFSTAEALPAVFELQPNLDTYNALMHVLSKMRKQEIENASLGIGMSLLDKMDSEGVKPDEETFISLVDLACSSEGLSEAVADELVERMTTR 768
            N L  A R  DA+L+T ++          +   Y + V  ++ V     AL+ L      G      ++      +     R    +  L SLK+ G  VP+ AVN +I     R  +D+     +AL  V E  P   T+N L     K +          + M L  +M    V+PD  T+  L+ L C +E  +   A    E M +R
Sbjct:  369 NALISAARHADADLSTSVFQLLGERKEVLTQQHYEMLVDTYVKVEDMRTALSVLCIMQSSGTPPDEFSMRLLFKWVRNQPERAMQLFGELRSLKEEGNAVPIVAVNALIEAAIYRNDLDQAIDMYKALHTVCESGPTTATFNILFRGCPKRKD---------LAMFLAAEMVERNVEPDALTYDRLL-LICLNEQDNYDDAFRYYEEMRSR 569
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7055.14707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FRK7_ECTSI1.440e-13868.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TTJ6_9STRA4.520e-1226.56Pentatricopeptide repeat containing protein n=1 Ta... [more]
A0A4D9DA12_9STRA4.940e-1226.27Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7I4ATU3_PHYPA6.670e-1034.65Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
K2RV78_MACPH6.640e-724.71Protein-tyrosine phosphatase receptor/non-receptor... [more]
A0A8H4ILH5_9PEZI1.630e-525.12Protein-tyrosine phosphatase receptor/non-receptor... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7055contigH-elongata_contig7055:13..3835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score421.4
Seed ortholog evalue3.5e-115
Seed eggNOG ortholog2880.D7FRK7
KEGG rclassRC00037,RC00094
KEGG koko:K16342
KEGG ReactionR01315,R01317,R02053,R07064,R07379,R07387,R07859
KEGG Pathwayko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,ko04010,ko04014,ko04072,ko04217,ko04270,ko04370,ko04611,ko04664,ko04724,ko04726,ko04730,ko04750,ko04912,ko04913,ko04921,ko05231,map00564,map00565,map00590,map00591,map00592,map01100,map01110,map04010,map04014,map04072,map04217,map04270,map04370,map04611,map04664,map04724,map04726,map04730,map04750,map04912,map04913,map04921,map05231
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
EC3.1.1.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L10/L12
Ec32 orthologEc-12_002650.1
Exons9
Model size888
Cds size888
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.805128-CDS-H-elongata_contig7055:12..1291622931102.805128-CDS-H-elongata_contig7055:12..129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 13..129 +
1691679699.087541-CDS-H-elongata_contig7055:12..1291691679699.087541-CDS-H-elongata_contig7055:12..129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 13..129 +
1622931102.8257442-CDS-H-elongata_contig7055:479..5901622931102.8257442-CDS-H-elongata_contig7055:479..590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 480..590 +
1691679699.1000984-CDS-H-elongata_contig7055:479..5901691679699.1000984-CDS-H-elongata_contig7055:479..590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 480..590 +
1622931102.8393502-CDS-H-elongata_contig7055:970..10541622931102.8393502-CDS-H-elongata_contig7055:970..1054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 971..1054 +
1691679699.1158025-CDS-H-elongata_contig7055:970..10541691679699.1158025-CDS-H-elongata_contig7055:970..1054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 971..1054 +
1622931102.8581264-CDS-H-elongata_contig7055:1284..14511622931102.8581264-CDS-H-elongata_contig7055:1284..1451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 1285..1451 +
1691679699.1302106-CDS-H-elongata_contig7055:1284..14511691679699.1302106-CDS-H-elongata_contig7055:1284..1451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 1285..1451 +
1622931102.8723135-CDS-H-elongata_contig7055:1693..18081622931102.8723135-CDS-H-elongata_contig7055:1693..1808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 1694..1808 +
1691679699.1398294-CDS-H-elongata_contig7055:1693..18081691679699.1398294-CDS-H-elongata_contig7055:1693..1808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 1694..1808 +
1622931102.890027-CDS-H-elongata_contig7055:2212..22681622931102.890027-CDS-H-elongata_contig7055:2212..2268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 2213..2268 +
1691679699.1491604-CDS-H-elongata_contig7055:2212..22681691679699.1491604-CDS-H-elongata_contig7055:2212..2268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 2213..2268 +
1622931102.9046705-CDS-H-elongata_contig7055:2613..26921622931102.9046705-CDS-H-elongata_contig7055:2613..2692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 2614..2692 +
1691679699.1581182-CDS-H-elongata_contig7055:2613..26921691679699.1581182-CDS-H-elongata_contig7055:2613..2692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 2614..2692 +
1622931102.948168-CDS-H-elongata_contig7055:3089..31721622931102.948168-CDS-H-elongata_contig7055:3089..3172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 3090..3172 +
1691679699.167981-CDS-H-elongata_contig7055:3089..31721691679699.167981-CDS-H-elongata_contig7055:3089..3172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 3090..3172 +
1622931102.9776394-CDS-H-elongata_contig7055:3759..38351622931102.9776394-CDS-H-elongata_contig7055:3759..3835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 3760..3835 +
1691679699.1795154-CDS-H-elongata_contig7055:3759..38351691679699.1795154-CDS-H-elongata_contig7055:3759..3835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7055 3760..3835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7055.14707.1prot_H-elongata_contig7055.14707.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7055 13..3835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7055.14707.1

>prot_H-elongata_contig7055.14707.1 ID=prot_H-elongata_contig7055.14707.1|Name=mRNA_H-elongata_contig7055.14707.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=296bp
GHKPRDNLANKLTYTCMRHGDAELMHKALDLLQITGNAVVPLTVQNVLYM
ATRKRDAELATKIWVAAQGWGHTFSDVDYSLTVQAFMAVGKDEMALATLV
QAFKDGRTVTRKTLTFCAHRLSISNNRLDGAYYTLTSLKQNGETVPVEAV
NTIIVGCAIRGGVDRCFSTAEALPAVFELQPNLDTYNALMHVLSKMRKQE
IENASLGIGMSLLDKMDSEGVKPDEETFISLVDLACSSEGLSEAVADELV
ERMTTRYGLRLDQDVVDTLANAFHDRGEEDVAQAWAARLPPLDGAS
back to top

mRNA from alignment at H-elongata_contig7055:13..3835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7055.14707.1 ID=mRNA_H-elongata_contig7055.14707.1|Name=mRNA_H-elongata_contig7055.14707.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3823bp|location=Sequence derived from alignment at H-elongata_contig7055:13..3835+ (Himanthalia elongata Himel1 dioecious)
GGCCACAAGCCAAGAGATAACCTTGCGAACAAGCTCACCTACACGTGCAT
GCGTCACGGTGATGCGGAGCTCATGCACAAGGCTCTGGACCTTTTGCAAA
TCACCGGGAACGCCGTGGTGAGCGGAGCGGTAGTCCACCAATCAGATTAA
TGGATTTGGGGCTGGGAAAGACTTCCGCGTTGGCATGACCAGGAAAAGCC
AGCTCGCTACTGTTCTTATAGTCCATCAAATGAAATATTGTCCTTGTTTT
GTGGGCTGACGATATTGTCCGACCAAGATTTTCTTTTTTGGTTTCTCGTT
CAGTGCCGGCGTTCTCTGGGCCCGAGAGATCTGTGAGTTCGAGCTAGTTT
CTCGGTGCGACCGCAGGCCACCGTAGTGTTGCAGCTCGTCCGTCATGCCA
AATACTTGTGTTCAATCAGGCCCGAGACCACTGCCGTTACTTTTGCGGTG
GGTTATACTATTATTAGGTGCCGCTGACGGTGCAGAACGTGCTATACATG
GCGACGCGCAAGAGAGACGCCGAGCTGGCCACCAAGATTTGGGTCGCGGC
CCAGGGATGGGGGCACACCTTCTCTGACGTGAGAGCCGTCCGTGTCGCTC
GAGCGCTGGTTGGCCCATCCGTTCCTTTTTATTCTTTTGCTGTATTGTAG
ATGGCATCGTCTCATATTCTTCTTTTCATGATCGCTTGCTGCTCTTCCCT
TTTGCTACACGCATGATGCAATGTGGTGTGGAACCGTATGCTTTGATCTT
AGATAGTTTTTGATGTGTGATACCGTCGACAATTTTTTGGTGGGGTTTGG
AGTTGTACGCACCGCATGGTGGGTGAGGTATAAAGCACGAATGTGTGTTT
TGGGGGGTTTCGACAAGTGGCGTTCTTGGAGTTTTTGGTTTTCGAGGCTT
GCCTCGTTGCTGTTGCCTCTGCTGCCGACCTTCCTTGCCTCCTTGCTGCT
GATTCTAGGTGGACTACTCGCTGACAGTCCAAGCCTTCATGGCTGTTGGA
AAAGACGAGATGGCGCTGGCCACTCTCGTGCAGGCCTTCAAGGTGAGACC
ATTTGACTCGCGTCCTATGTTAATGTCTCGTCCCGCCGAATAAAAAAATG
AGGTGAAGGGCAAGGGAAAACCCTGCTGTGTCGTAACCCACGCTTGACCT
AGCGTATCGTGGAAGCTAGTTCCAGTCATCGGGTTATATGTTAGTTTGAT
GCTGGAGTTGGCCTCGTGACACGTGGAAGCCTTGCTTGTTTTTTCCTACT
GTACCCCTATTATTTTGCGCAGGATGGCCGGACGGTTACCAGGAAGACGC
TCACCTTCTGTGCGCATAGACTGTCGATCTCCAACAATCGCCTGGATGGG
GCGTACTACACGCTGACGTCTCTGAAGCAGAACGGCGAGACTGTGCCGGT
GGAGGCTGTGAACACCATCATCGTCGGCTGTGCCATAAGGTGGGATTCAC
GATAAAACATATGTTGTTGAAAAATGCCCTAGTGTGTGTAAATTATCTTT
TTTTTCTATCATCGCCTTGGCGGTAACATTTTTTGACAAAGCTATTGATG
GGTTGAAACACAAAAGCGGGGAAAAGGAGCGTGACGCCGTTTGCTTGACT
TGAGTGTTGTTGATTTCGGCTTGGATTGTTCGGGTTTGAATTGGTTTGGT
TCGATGTACCGCAACACGTCGGCGGCCGCAGGGGAGGGGTCGACCGATGT
TTCTCTACGGCGGAGGCGCTACCGGCGGTATTCGAGCTGCAGCCCAACCT
CGACACCTACAACGCACTCATGCACGTGCTGAGCAAGATGCGAAAGGTAA
CGTGACGATGTAAATAGGCTGAGAGCGTCCCCCCCTCACGGAGGTTCGAG
TTTGCTACTACTGCAGTAAGGATTCTGTTGTGTGTTTCGCGCCCCGCTTC
GTTTTGTTCCGTAGATGGGCTCTCAATCGCGAAGGCAGACACATTGATCA
AAATTAGAGTTGAGCTACGACTCGTCAGGCTTGAAAAGACAGCGTCAACG
TTCCCAAACGTTCTTGGCCGCGTGAAAGAAATGTTGCGTGCTTGCCCCTG
TGAGATTTTGCAACCCACCACTTCTATCGCCACCCCGCGCCGCCGTCGTC
CGTCATTCGTTCTCCTCTTGAGTATGCCCCATTGTCCTCCTGAACTTCTT
ATCCGTCCGTCCTCCCTCCGCCCTCCCCTTTTTTATTCGTGCCTCTCCAG
CAAGAGATCGAGAACGCGTCGCTGGGTATCGGCATGTCCTTGCTTGACAA
GATGGAGTGAGTACTACGGCTACGGTGATAAATGATCCTCCTGGGATATA
CATTTCATTTTTACATCAAATGCATGTTCTGGGTTGTACGTAGGATATAT
CATGTATAAATAGAGAGGGGAGAGGGGAAATATCATCGGCCGCTACCCGT
CTGTTCGCGAGAGCGACGCTTTCGAGTGAGTTTTGTGTGCCGCGGCCTGT
CTTCAGGCGAGATGCTTGTACGGCTTTGACTGAGGGATGTTCTACTACCC
TTCCTCATCTTCGTGATCTCTAGACACCCCCTTCCATCAATGAACTGCGC
TTCTCATGCAAGCCTCTTTGGTCATTGTTTTTTGTTGTTGTTCCAATAAA
GCTCCGAGGGCGTGAAGCCTGACGAAGAGACCTTCATTAGTCTCGTGGAT
CTTGCCTGCTCGTCGGAAGGATTATCAGAGGTGAGGTGTATAAATCTATT
TCTATGGGAGTGTTTGTGTCATGAGGGTGGCATTCTGGGAATTAAGGGGT
GAATAAGATGTAGGCCAGCAAAGCCCCGATACCTTTCTTGGTTGGCTACA
GTACGTGGGCGTAAAGGCCTCGCTGTTGACTCTAGCGACTTCAGCATCAA
CGATTCTGGGGTATAGAAAAAGGAGACATTTGATATTTGATCGGCGGTGG
TGCGAACTCTTTTTCGATATAAACTCTGTTCACAGTATCCACTACCGCCT
AGATATACCGGTATCCTTTACGTTGATTTAACCCTCAATCCCTACAAAAA
ACGATCGGTCTGCATGCACGTTGGTCATACCGTGAACGGCGGGATACGAC
TCGGGGAACTCCGACTGAACGCGGCAGGCGGTTGCGGATGAGCTCGTGGA
GCGCATGACAACCCGTTACGGCCTACGACTGGACCAGGACGTGGTGGACA
CCTTGGCAAAGTTAGTCGCACCTCGCAAACTATACCGCGAGAGTTATGAT
CCTAGCCTAGAGTATATGAAGTGGTGAGCACTTCGTGGTTGGCTATTCTG
ACCTGTAGGCAGGCACTTTCGAAATCTTCTTCCACACGACTATTCTCGCA
TAGCGCGCACCGCAGACAGGGTCATGAAACAATTGAAGATATTGTTCAAT
GCCAACTAGCCCCCTTCAGCATCCGTTTTCTCTTTGAAATATATTTCCTA
ATGAGTTCGTATGTTGTTTTTAAGATAGACATGTTTTCTATCCACATCAA
CCTCACTCTGCCGCATGTGTAAACTCCGCTTATCAGTTTATCGTAAAAAA
GAAACATGAACTATTGAATTCTAACCCTCCAAACATCCACGCCTTCTTAG
CACCATGAAAGGTAAATTCCAGGAGACCAACTATCGTCAAGTTCGAATAT
GTACATTACTACCTTTCAGCACAAAATCGTCACTTGTGATTGATCTTTCC
CCCCAGTAGTAAGCTCATCGGGTCAACACCATAGCATCTGTGCCCACCCC
TCATCCCCTCACTCCCACTGCCGTATCCCCTTTACCCTTGAGACCAGTGC
CTTCCACGACAGGGGAGAAGAAGACGTGGCGCAGGCGTGGGCGGCCAGAC
TTCCTCCTCTGGACGGAGCGTCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7055:13..3835+

>mRNA_H-elongata_contig7055.14707.1 ID=mRNA_H-elongata_contig7055.14707.1|Name=mRNA_H-elongata_contig7055.14707.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1776bp|location=Sequence derived from alignment at H-elongata_contig7055:13..3835+ (Himanthalia elongata Himel1 dioecious)
GGCCACAAGCCAAGAGATAACCTTGCGAACAAGCTCACCTACACGTGCAT
GCGTCACGGTGATGCGGAGCTCATGCACAAGGCTCTGGACCTTTTGCAAA
TCACCGGGAACGCCGTGGGCCACAAGCCAAGAGATAACCTTGCGAACAAG
CTCACCTACACGTGCATGCGTCACGGTGATGCGGAGCTCATGCACAAGGC
TCTGGACCTTTTGCAAATCACCGGGAACGCCGTGGTGCCGCTGACGGTGC
AGAACGTGCTATACATGGCGACGCGCAAGAGAGACGCCGAGCTGGCCACC
AAGATTTGGGTCGCGGCCCAGGGATGGGGGCACACCTTCTCTGACGTGCC
GCTGACGGTGCAGAACGTGCTATACATGGCGACGCGCAAGAGAGACGCCG
AGCTGGCCACCAAGATTTGGGTCGCGGCCCAGGGATGGGGGCACACCTTC
TCTGACGTGGACTACTCGCTGACAGTCCAAGCCTTCATGGCTGTTGGAAA
AGACGAGATGGCGCTGGCCACTCTCGTGCAGGCCTTCAAGGTGGACTACT
CGCTGACAGTCCAAGCCTTCATGGCTGTTGGAAAAGACGAGATGGCGCTG
GCCACTCTCGTGCAGGCCTTCAAGGATGGCCGGACGGTTACCAGGAAGAC
GCTCACCTTCTGTGCGCATAGACTGTCGATCTCCAACAATCGCCTGGATG
GGGCGTACTACACGCTGACGTCTCTGAAGCAGAACGGCGAGACTGTGCCG
GTGGAGGCTGTGAACACCATCATCGTCGGCTGTGCCATAAGGATGGCCGG
ACGGTTACCAGGAAGACGCTCACCTTCTGTGCGCATAGACTGTCGATCTC
CAACAATCGCCTGGATGGGGCGTACTACACGCTGACGTCTCTGAAGCAGA
ACGGCGAGACTGTGCCGGTGGAGGCTGTGAACACCATCATCGTCGGCTGT
GCCATAAGGGGAGGGGTCGACCGATGTTTCTCTACGGCGGAGGCGCTACC
GGCGGTATTCGAGCTGCAGCCCAACCTCGACACCTACAACGCACTCATGC
ACGTGCTGAGCAAGATGCGAAAGGGGAGGGGTCGACCGATGTTTCTCTAC
GGCGGAGGCGCTACCGGCGGTATTCGAGCTGCAGCCCAACCTCGACACCT
ACAACGCACTCATGCACGTGCTGAGCAAGATGCGAAAGCAAGAGATCGAG
AACGCGTCGCTGGGTATCGGCATGTCCTTGCTTGACAAGATGGACAAGAG
ATCGAGAACGCGTCGCTGGGTATCGGCATGTCCTTGCTTGACAAGATGGA
CTCCGAGGGCGTGAAGCCTGACGAAGAGACCTTCATTAGTCTCGTGGATC
TTGCCTGCTCGTCGGAAGGATTATCAGAGCTCCGAGGGCGTGAAGCCTGA
CGAAGAGACCTTCATTAGTCTCGTGGATCTTGCCTGCTCGTCGGAAGGAT
TATCAGAGGCGGTTGCGGATGAGCTCGTGGAGCGCATGACAACCCGTTAC
GGCCTACGACTGGACCAGGACGTGGTGGACACCTTGGCAAAGCGGTTGCG
GATGAGCTCGTGGAGCGCATGACAACCCGTTACGGCCTACGACTGGACCA
GGACGTGGTGGACACCTTGGCAAATGCCTTCCACGACAGGGGAGAAGAAG
ACGTGGCGCAGGCGTGGGCGGCCAGACTTCCTCCTCTGGACGGAGCGTCC
TGCCTTCCACGACAGGGGAGAAGAAGACGTGGCGCAGGCGTGGGCGGCCA
GACTTCCTCCTCTGGACGGAGCGTCC
back to top