mRNA_H-elongata_contig70548.14706.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70548.14706.1
Unique NamemRNA_H-elongata_contig70548.14706.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70548.14706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70548contigH-elongata_contig70548:2600..3216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size590
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70548.14706.1prot_H-elongata_contig70548.14706.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70548 2690..3055 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.7136946-UTR-H-elongata_contig70548:2599..26891622931102.7136946-UTR-H-elongata_contig70548:2599..2689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70548 2600..2689 -
1691679699.0466273-UTR-H-elongata_contig70548:2599..26891691679699.0466273-UTR-H-elongata_contig70548:2599..2689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70548 2600..2689 -
1622931102.7629511-UTR-H-elongata_contig70548:3055..32161622931102.7629511-UTR-H-elongata_contig70548:3055..3216Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70548 3056..3216 -
1691679699.0779195-UTR-H-elongata_contig70548:3055..32161691679699.0779195-UTR-H-elongata_contig70548:3055..3216Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig70548 3056..3216 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.726402-CDS-H-elongata_contig70548:2689..29361622931102.726402-CDS-H-elongata_contig70548:2689..2936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70548 2690..2936 -
1691679699.0582907-CDS-H-elongata_contig70548:2689..29361691679699.0582907-CDS-H-elongata_contig70548:2689..2936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70548 2690..2936 -
1622931102.743669-CDS-H-elongata_contig70548:2963..30551622931102.743669-CDS-H-elongata_contig70548:2963..3055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70548 2964..3055 -
1691679699.0693104-CDS-H-elongata_contig70548:2963..30551691679699.0693104-CDS-H-elongata_contig70548:2963..3055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70548 2964..3055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70548.14706.1

>prot_H-elongata_contig70548.14706.1 ID=prot_H-elongata_contig70548.14706.1|Name=mRNA_H-elongata_contig70548.14706.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MRAAAEPGLEVDPVGKVGKIGRVKNVSSTTEVIRHRCILYTGNNIRGNAL
ARSCATREMIDVAIAEYSQPARETNLPTAPANDLFTPSTVDEVEEFAFNR
EGLPEEIGLAIL*
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mRNA from alignment at H-elongata_contig70548:2600..3216-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70548.14706.1 ID=mRNA_H-elongata_contig70548.14706.1|Name=mRNA_H-elongata_contig70548.14706.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=617bp|location=Sequence derived from alignment at H-elongata_contig70548:2600..3216- (Himanthalia elongata Himel1 dioecious)
ACTAAATGGACTAATTCCCCGCTTCCCTGATGAAGCACGTTTATTTGCAT
TAAAAGGTGAATTTGATTTAAGTGACCTGGAAGCTGGGATTACCCGGGCG
GAGAGCTTCAAGTTGGAGCAAGAGAGGAGGAACGCCACAGTCCACGCGCT
AGCCGTTGCTCATGCGAGCGGCGGCCGAACCGGGGCTGGAGGTGGACCCC
GTGGGAAAGGTCGGCAAGATCGGAAGGGTAAAAAATGTGTCAAGCACCAC
GGAGCTGGCCGAGGCCATGACCGGCAACAGGGTCATCCGCCACAGATGCA
TCCTGTACACCGGCAACAACATCCGCGGCAACGCACTGGCGCGCAGTTGC
GCCACCCGCGAGATGATCGACGTGGCAATTGCCGAATACTCTCAGCCGGC
GCGCGAAACTAACCTCCCAACTGCCCCTGCCAACGACCTGTTCACCCCGT
CTACCGTCGACGAAGTAGAGGAATTCGCGTTTAACCGCGAGGGGCTGCCC
GAAGAAATCGGGTTGGCAATTTTATAACAGCTGAGGTAGAAGGCCTGATA
AGCATACCGTCTAGGAAAGAAGACGAAGCACCGCCGCAGGGAGGACAGCT
GGTGAGACGAGACCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig70548:2600..3216-

>mRNA_H-elongata_contig70548.14706.1 ID=mRNA_H-elongata_contig70548.14706.1|Name=mRNA_H-elongata_contig70548.14706.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig70548:2600..3216- (Himanthalia elongata Himel1 dioecious)
ATGCGAGCGGCGGCCGAACCGGGGCTGGAGGTGGACCCCGTGGGAAAGGT
CGGCAAGATCGGAAGGGTAAAAAATGTGTCAAGCACCACGGAATGCGAGC
GGCGGCCGAACCGGGGCTGGAGGTGGACCCCGTGGGAAAGGTCGGCAAGA
TCGGAAGGGTAAAAAATGTGTCAAGCACCACGGAGGTCATCCGCCACAGA
TGCATCCTGTACACCGGCAACAACATCCGCGGCAACGCACTGGCGCGCAG
TTGCGCCACCCGCGAGATGATCGACGTGGCAATTGCCGAATACTCTCAGC
CGGCGCGCGAAACTAACCTCCCAACTGCCCCTGCCAACGACCTGTTCACC
CCGTCTACCGTCGACGAAGTAGAGGAATTCGCGTTTAACCGCGAGGGGCT
GCCCGAAGAAATCGGGTTGGCAATTTTATAAGGTCATCCGCCACAGATGC
ATCCTGTACACCGGCAACAACATCCGCGGCAACGCACTGGCGCGCAGTTG
CGCCACCCGCGAGATGATCGACGTGGCAATTGCCGAATACTCTCAGCCGG
CGCGCGAAACTAACCTCCCAACTGCCCCTGCCAACGACCTGTTCACCCCG
TCTACCGTCGACGAAGTAGAGGAATTCGCGTTTAACCGCGAGGGGCTGCC
CGAAGAAATCGGGTTGGCAATTTTATAA
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